Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Reverse (-)

63805267 .. 63807314

Gene Structure 2048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG471400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGAAAGCAAGTGCATTCCTTTGCCATCCCCCTCCCTCACATGGAAAGCTCATCACTGTTCTCAGCATTGATGGAGGTGGAATCAAAGGGATTATCCCCGGGACTCTGCTCAGCTTCCTAGAGTCCGAGCTCCAGGATGACCAATTGAGCACCGACTTGAATTCTATGGATAATGCTACGCCTGAAAACTTGAAAAAACTTGTAAAAGTGGGAGAGGCACTGTTAAAGAAACAAGCTTCAAAGTTGAATATAGCTACCGGCCTCCATGAGCCTGATGAACGTCATATTACTAATGAAGAGGCTCTCAGAAGGGTAGCGGCAGTTCTCTCCAAAGAGAAGAAGGAACGTGCAATCAGATCAGCAGCACCACAAGCAAACCCAGCATCTGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

132

Amino Acids

14.13

Weight (kDa)

6.91

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	163, 196, 243, 250
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	6 cut(s)	52, 117, 133, 239, 257, 396
AluI	AGCT	6 cut(s)	52, 117, 133, 239, 257, 396
Alw21I	GWGCWC	2 cut(s)	135, 155
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	102, 103
AvaI	CYCGRG	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	135, 155
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	2 cut(s)	36, 68
BciT130I	CCWGG	1 cut(s)	137
BcnI	CCSGG	2 cut(s)	102, 103
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	2 cut(s)	321, 366
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	2 cut(s)	322, 367
Bme1390I	CCNGG	3 cut(s)	102, 103, 137
BmeT110I	CYCGRG	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	102, 103, 137
BmsI	GCATC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	102, 103
BsaJI	CCNNGG	2 cut(s)	100, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	100, 101
BseGI	GGATG	2 cut(s)	28, 145
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	3 cut(s)	79, 127, 322
BseXI	GCAGC	1 cut(s)	377
BseYI	CCCAGC	1 cut(s)	382
BshFI	GGCC	1 cut(s)	264
BsiHKAI	GWGCWC	2 cut(s)	135, 155
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	102, 261
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	135, 155
Bsp143I	GATC	1 cut(s)	359
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	3 cut(s)	78, 126, 321
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	100, 101
BssMI	GATC	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	61, 225
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	3 cut(s)	65, 113, 308
BstF5I	GGATG	2 cut(s)	28, 145
BstKTI	GATC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 383
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	100, 101, 135
BstV1I	GCAGC	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	28, 145
BtsIMutI	CAGTG	2 cut(s)	57, 221
Cac8I	GCNNGC	1 cut(s)	394
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	260
Cfr9I	CCCGGG	1 cut(s)	101
CviAII	CATG	2 cut(s)	44, 269
CviJI	RGCY	9 cut(s)	52, 117, 133, 239, 257, 264, 274, 305, 396
CviKI_1	RGCY	9 cut(s)	52, 117, 133, 239, 257, 264, 274, 305, 396
DdeI	CTNAG	3 cut(s)	65, 113, 308
DpnI	GATC	1 cut(s)	361
DpnII	GATC	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	2 cut(s)	47, 272
FaiI	YATR	5 cut(s)	45, 170, 254, 270, 288
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	43, 268
Fnu4HI	GCNGC	2 cut(s)	321, 366
FokI	GGATG	2 cut(s)	15, 152
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	321, 366
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	2 cut(s)	321, 366
GsaI	CCCAGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	2 cut(s)	102, 261
Hin1II	CATG	2 cut(s)	47, 272
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	3 cut(s)	84, 106, 125
HpaII	CCGG	2 cut(s)	102, 261
Hpy188I	TCNGA	3 cut(s)	130, 311, 359
HpyAV	CCTTC	2 cut(s)	306, 337
HpyCH4III	ACNGT	2 cut(s)	61, 225
HpyCH4IV	ACGT	2 cut(s)	283, 349
HpyCH4V	TGCA	2 cut(s)	17, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 383
HpyF3I	CTNAG	3 cut(s)	65, 113, 308
HpySE526I	ACGT	2 cut(s)	283, 349
Hsp92II	CATG	2 cut(s)	47, 272
Kzo9I	GATC	1 cut(s)	359
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	6 cut(s)	115, 122, 149, 198, 274, 288
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	283, 349
MalI	GATC	1 cut(s)	361
MboI	GATC	1 cut(s)	359
MboII	GAAGA	2 cut(s)	311, 352
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	135, 155
MluCI	AATT	2 cut(s)	146, 163
MlyI	GAGTC	2 cut(s)	100, 134
MnlI	CCTC	6 cut(s)	45, 49, 71, 211, 275, 295
MseI	TTAA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	2 cut(s)	102, 261
MspR9I	CCNGG	3 cut(s)	102, 103, 137
MunI	CAATTG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	374, 383
NciI	CCSGG	2 cut(s)	102, 103
NdeII	GATC	1 cut(s)	359
NlaIII	CATG	2 cut(s)	47, 272
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	2 cut(s)	322, 367
PleI	GAGTC	2 cut(s)	100, 133
PpsI	GAGTC	2 cut(s)	100, 133
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	135
PsrI	GAACNNNNNNTAC	2 cut(s)	309, 341
PstNI	CAGNNNCTG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	2 cut(s)	321, 366
Sau3AI	GATC	1 cut(s)	359
SchI	GAGTC	2 cut(s)	100, 134
ScrFI	CCNGG	3 cut(s)	102, 103, 137
SduI	GDGCHC	2 cut(s)	135, 155
SetI	ASST	9 cut(s)	54, 82, 119, 135, 241, 259, 286, 352, 398
SfaNI	GCATC	1 cut(s)	395
SmaI	CCCGGG	1 cut(s)	103
Sse9I	AATT	2 cut(s)	146, 163
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	100, 101, 135
TaaI	ACNGT	2 cut(s)	61, 225
TaiI	ACGT	2 cut(s)	286, 352
TasI	AATT	2 cut(s)	146, 163
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	64, 228
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	294, 312
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	2 cut(s)	64, 228
XapI	RAATTY	1 cut(s)	163
XmaI	CCCGGG	1 cut(s)	101
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.