Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005216

Physical Location & Seq

Genomic Coordinates Forward (+)

75590104 .. 75592308

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG540900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGAAAGCAAGTGCATTCCTCCGCCATCCTCCTCCTTGTAAGGGAAAACTCATCACTATCCTTAGCATTGATGGAGGTGGAGTCAAAGGGATTATCCCCGGAACTATTCTCGCCGTCTTAGAGAAGAAGCTTCAGCATGATCAATTGCCTGCAGACATGAATTCTATGGACAATGCTAAAGAAGAAAACCTGAAAAATCTTGTGATAGCTGGGCAGGAGCTGTTACAGAAACCGCTTTCAAAGATGAATACAGCTACCGGTCGCCTTGAGACTGTTAAACCTGAGATCACAAATGAAAAGGCTCTCGAAATGATGGCTGAAAAACTCGTTGAGGAGAGGAAGAAACGTCAAAGCCGAGACCATGACCATGGTCACCAGAAGGAAATTGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009626 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0012501 GO:0016020 GO:0016053 GO:0016298 GO:0016787 GO:0016788 GO:0019752 GO:0031407 GO:0031408 GO:0032787 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045087 GO:0046394 GO:0046686 GO:0047372 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0052689 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0072330 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

132

Amino Acids

14.67

Weight (kDa)

7.87

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37050 AT4G37060 AT4G37060 AT4G37070 AT4G37070 AT4G37070 AT4G37070
fragaria_vesca	FvH4_1g15780 FvH4_1g15780 FvH4_1g15780 FvH4_1g15780
malus_domestica	MD02G1169600.v1.1
prunus_persica	Prupe.7G135600_v2.0.a1 Prupe.7G135600_v2.0.a1
pyrus_communis	pycom02g13660
rosa_chinensis	RchiOBHm_Chr2g0105061
rosa_laevigata	RLG00000017398
rosa_multiflora	Rmu_sc0005160.1_g000011
rosa_roxburghii	Rroxscaffold_2G00138460
rosa_rugosa	Rorug02G0125900
rosa_samantha	Rh2AG176700 Rh2BG184600 Rh2CG181000 Rh2DG182800 Rh3CG284400 Rh5CG540900 Rh6DG471400 Rh6DG471600
rosa_wichuraiana	Rw2G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	25, 236
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	243
AluBI	AGCT	4 cut(s)	133, 212, 223, 257
AluI	AGCT	4 cut(s)	133, 212, 223, 257
Alw26I	GTCTC	2 cut(s)	266, 354
AlwNI	CAGNNNCTG	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	163
AsiGI	ACCGGT	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	368
BccI	CCATC	3 cut(s)	36, 68, 310
BceAI	ACGGC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	266, 354
BfmI	CTRYAG	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	382
BoxI	GACNNNNGTC	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	100, 370
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	100, 370
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	24, 350
BseYI	CCCAGC	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	265
BshTI	ACCGGT	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	102, 261
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	266, 354
BsmI	GAATGC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	142, 288
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	2 cut(s)	25, 236
BspCNI	CTCAG	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	100, 370
BssMI	GATC	2 cut(s)	142, 288
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	65, 121, 285
BstDSI	CCRYGG	1 cut(s)	370
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	145, 291
BstMAI	GTCTC	2 cut(s)	266, 354
BstMBI	GATC	2 cut(s)	142, 288
BstMCI	CGRYCG	1 cut(s)	265
BstPAI	GACNNNNGTC	1 cut(s)	372
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	260
CspAI	ACCGGT	1 cut(s)	260
CviAII	CATG	4 cut(s)	140, 160, 365, 371
CviJI	RGCY	7 cut(s)	133, 212, 223, 257, 305, 320, 357
CviKI_1	RGCY	7 cut(s)	133, 212, 223, 257, 305, 320, 357
DdeI	CTNAG	3 cut(s)	65, 121, 285
DpnI	GATC	2 cut(s)	144, 290
DpnII	GATC	2 cut(s)	142, 288
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	143, 163, 368, 374
FaiI	YATR	5 cut(s)	141, 161, 170, 366, 372
FatI	CATG	4 cut(s)	139, 159, 364, 370
FbaI	TGATCA	1 cut(s)	142
FokI	GGATG	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	216
HapII	CCGG	2 cut(s)	102, 261
Hin1II	CATG	4 cut(s)	143, 163, 368, 374
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	102, 261
HphI	GGTGA	1 cut(s)	368
Hpy188III	TCNNGA	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	2 cut(s)	17, 155
HpyF3I	CTNAG	3 cut(s)	65, 121, 285
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	4 cut(s)	143, 163, 368, 374
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	142, 288
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	8 cut(s)	115, 165, 198, 203, 206, 274, 297, 392
LweI	GCATC	1 cut(s)	382
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	225, 374
MalI	GATC	2 cut(s)	144, 290
MboI	GATC	2 cut(s)	142, 288
MboII	GAAGA	3 cut(s)	139, 197, 355
MfeI	CAATTG	1 cut(s)	146
MluCI	AATT	3 cut(s)	146, 163, 387
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	32, 42, 45, 71, 328, 333
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	2 cut(s)	102, 261
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	17
NciI	CCSGG	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	142, 288
NlaIII	CATG	4 cut(s)	143, 163, 368, 374
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	17
PinAI	ACCGGT	1 cut(s)	260
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PshAI	GACNNNNGTC	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	142, 288
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	8 cut(s)	82, 135, 195, 214, 225, 259, 286, 352
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	146, 163, 387
SsiI	CCGC	2 cut(s)	25, 236
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	309
TasI	AATT	3 cut(s)	146, 163, 387
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	176, 263, 312
XapI	RAATTY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.