AT4G38690

PI-PLC X-box domain-containing protein DDB_G0293730-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005813
Physical Location & Seq
Reverse (-)
18074320 .. 18075957
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38690.1

Sequence Viewer

Length: 957 bp
ATGGGCTCTCACCTTTCCAAACAACTCGAGCGGCGAAAAGCCATCTCCACGGAGAAGAAAGCCCTCACCGATCTCGAGAAATCGTGCGGCTGCGAGTTTCCGGGGTGTGATTACATGCCTTCCGATCGTAAAAACTGGATGGCCGGCGTTGGACCTGAAAAGCTTCACATCAACAAGATCGTCTGGCCTGGGACGCACGACTCTGCCACCAACAAAATCGGTATCCGATTCGTGTCTCGTCCCTTTGCTAAGTGCCAATCTCTCTCCATCTATAACCAGCTCGTGGCGGGTACTCGAGTCCTTGACATTCGTGTCCAAGAAGATCGCCGTGTATGCCACGGTATCCTCAAGACTTATAGTGTCGACGTTGTCTTGGCCGATCTCAAACGGTTTCTATCCGAAACAGAGTCGGAGATTGTCATTCTTGAGATCAGAACAGAGTTTGGACACGAAGACCCACCGGAGTTTGATAAGTATCTTGTGGAACAGCTTGGAGAGCATCTGATTCACCAGGACGATCACGTGTTCTCCAAGACAGTCGCTGAGCTGCTTCCCAAGAGAGTGATCTGCGTTTGGAAACCGAGGAAATCGCCTCAGCCTAAGCATGGTGATCCTCTTTGGAGCGCTGGTTACCTTAAAGACAATTGGATCGATACAGATCTTCCATCGACCAAATTCGAGAGCAACATCAAGCATTTGAGCCAGCAGCAACCAGCTACTTCAAGGAAATTCTTTTACCGGGTGGAGAACACAGTGACGCCGCAGCCCGATAACCCAATAATGTGTGTAAAACCGGTGACTAAGAGGATACATTGCTACGCCAAGGTATTCATCATAGAGTGTGTAAAAAGAGGATGTGCTGATAAACTGCAGATATTCTCAACTGATTTCATAGATAATGAATTTGTTGATGCTTGCGTTGGGCTCACCTTTGCGAGAGCTGAAGGTAAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI-PLC-X

Protein Analysis

318

Amino Acids

36.29

Weight (kDa)

8.4

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 78 - 175 7.3e-08 Phosphatidylinositol-specific phospholipase C, X domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 283
AccBSI CCGCTC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 363
AciI CCGC 4 cut(s) 31, 87, 287, 761
AclWI GGATC 2 cut(s) 605, 656
AcoI YGGCCR 2 cut(s) 141, 375
AcsI RAATTY 3 cut(s) 674, 728, 902
AcvI CACGTG 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 758
AfaI GTAC 1 cut(s) 292
AfeI AGCGCT 1 cut(s) 625
AfiI CCNNNNNNNGG 2 cut(s) 283, 605
AflIII ACRYGT 1 cut(s) 522
AgeI ACCGGT 1 cut(s) 793
AgsI TTSAA 1 cut(s) 723
AjnI CCWGG 2 cut(s) 187, 510
AluBI AGCT 6 cut(s) 163, 280, 490, 547, 716, 941
AluI AGCT 6 cut(s) 163, 280, 490, 547, 716, 941
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 2 cut(s) 605, 656
AlwNI CAGNNNCTG 1 cut(s) 542
Ama87I CYCGRG 3 cut(s) 26, 74, 294
Aor51HI AGCGCT 1 cut(s) 625
AoxI GGCC 4 cut(s) 141, 185, 375, 951
ApeKI GCWGC 4 cut(s) 90, 547, 706, 763
ApoI RAATTY 3 cut(s) 674, 728, 902
AsiGI ACCGGT 1 cut(s) 793
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 2 cut(s) 102, 740
AsuHPI GGTGA 5 cut(s) 58, 500, 620, 808, 919
AvaI CYCGRG 3 cut(s) 26, 74, 294
AvaII GGWCC 1 cut(s) 152
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BanII GRGCYC 2 cut(s) 8, 927
BauI CACGAG 1 cut(s) 281
BbrPI CACGTG 1 cut(s) 523
BbsI GAAGAC 1 cut(s) 459
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 4 cut(s) 77, 534, 718, 775
BccI CCATC 4 cut(s) 50, 133, 275, 673
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 2 cut(s) 189, 512
BciVI GTATCC 3 cut(s) 233, 353, 801
BcnI CCSGG 2 cut(s) 102, 740
BcoDI GTCTC 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 869
BfoI RGCGCY 1 cut(s) 627
BfuI GTATCC 3 cut(s) 233, 353, 801
BglII AGATCT 1 cut(s) 658
BisI GCNGC 7 cut(s) 32, 88, 91, 548, 707, 761, 764
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 7 cut(s) 33, 89, 92, 549, 708, 762, 765
Bme1390I CCNGG 4 cut(s) 102, 189, 512, 740
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 3 cut(s) 26, 74, 294
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 4 cut(s) 102, 189, 512, 740
BmsI GCATC 2 cut(s) 508, 901
BpiI GAAGAC 1 cut(s) 459
Bpu10I CCTNAGC 2 cut(s) 594, 600
Bpu1102I GCTNAGC 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 332, 446
BpuMI CCSGG 2 cut(s) 102, 740
Bsa29I ATCGAT 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 523
BsaBI GATNNNNATC 2 cut(s) 474, 657
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 6 cut(s) 48, 101, 188, 337, 581, 822
BsaWI WCCGGW 2 cut(s) 460, 793
BsaXI ACNNNNNCTCC 4 cut(s) 512, 542, 613, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 605
Bse118I RCCGGY 2 cut(s) 143, 793
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 811
Bse8I GATNNNNATC 2 cut(s) 474, 657
BseBI CCWGG 2 cut(s) 189, 512
BseCI ATCGAT 1 cut(s) 651
BseDI CCNNGG 6 cut(s) 48, 101, 188, 337, 581, 822
BseGI GGATG 2 cut(s) 144, 860
BseJI GATNNNNATC 2 cut(s) 474, 657
BseLI CCNNNNNNNGG 2 cut(s) 283, 605
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 2 cut(s) 534, 608
BseNI ACTGG 1 cut(s) 140
BseXI GCAGC 4 cut(s) 77, 534, 718, 775
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 143, 187, 377, 953
BshTI ACCGGT 1 cut(s) 793
BshVI ATCGAT 1 cut(s) 651
BsiEI CGRYCG 1 cut(s) 127
BsiHKCI CYCGRG 3 cut(s) 26, 74, 294
BsiSI CCGG 5 cut(s) 101, 144, 461, 739, 794
BslFI GGGAC 2 cut(s) 205, 225
BslI CCNNNNNNNGG 2 cut(s) 283, 605
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 2 cut(s) 205, 225
BsnI GGCC 4 cut(s) 143, 187, 377, 953
BsoBI CYCGRG 3 cut(s) 26, 74, 294
Bsp1286I GDGCHC 2 cut(s) 8, 927
Bsp1720I GCTNAGC 1 cut(s) 543
BspACI CCGC 4 cut(s) 31, 87, 287, 761
BspANI GGCC 4 cut(s) 143, 187, 377, 953
BspCNI CTCAG 2 cut(s) 535, 607
BspDI ATCGAT 1 cut(s) 651
BspMAI CTGCAG 1 cut(s) 873
BspPI GGATC 2 cut(s) 605, 656
BsrBI CCGCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 811
BsrFI RCCGGY 2 cut(s) 143, 793
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 2 cut(s) 143, 793
BssECI CCNNGG 6 cut(s) 48, 101, 188, 337, 581, 822
BssNI GRCGYC 1 cut(s) 758
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 189, 512
Bst4CI ACNGT 4 cut(s) 341, 390, 538, 754
BstACI GRCGYC 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 3 cut(s) 145, 704, 916
BstDEI CTNAG 5 cut(s) 249, 543, 594, 600, 801
BstDSI CCRYGG 2 cut(s) 48, 337
BstEII GGTNACC 1 cut(s) 629
BstF5I GGATG 2 cut(s) 144, 860
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 1 cut(s) 626
BstMAI GTCTC 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 3 cut(s) 193, 333, 496
BstNI CCWGG 2 cut(s) 189, 512
BstNSI RCATGY 1 cut(s) 118
BstPI GGTNACC 1 cut(s) 629
BstSCI CCNGG 4 cut(s) 100, 187, 510, 738
BstSFI CTRYAG 1 cut(s) 869
BstV1I GCAGC 4 cut(s) 77, 534, 718, 775
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
Bsu15I ATCGAT 1 cut(s) 651
BsuI GTATCC 3 cut(s) 233, 353, 801
BsuRI GGCC 4 cut(s) 143, 187, 377, 953
BsuTUI ATCGAT 1 cut(s) 651
BtgI CCRYGG 2 cut(s) 48, 337
BtsCI GGATG 2 cut(s) 144, 860
BtsIMutI CAGTG 1 cut(s) 759
Cac8I GCNNGC 3 cut(s) 145, 704, 916
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 1 cut(s) 626
Cfr10I RCCGGY 2 cut(s) 143, 793
Cfr13I GGNCC 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 651
CseI GACGC 2 cut(s) 202, 766
Csp6I GTAC 1 cut(s) 291
CspAI ACCGGT 1 cut(s) 793
CviAII CATG 2 cut(s) 115, 605
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 5 cut(s) 249, 543, 594, 600, 801
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 2 cut(s) 141, 375
Eco130I CCWWGG 1 cut(s) 822
Eco147I AGGCCT 1 cut(s) 953
Eco24I GRGCYC 2 cut(s) 8, 927
Eco47I GGWCC 1 cut(s) 152
Eco47III AGCGCT 1 cut(s) 625
Eco72I CACGTG 1 cut(s) 523
Eco88I CYCGRG 3 cut(s) 26, 74, 294
Eco91I GGTNACC 1 cut(s) 629
EcoO65I GGTNACC 1 cut(s) 629
EcoRII CCWGG 2 cut(s) 187, 510
EcoT14I CCWWGG 1 cut(s) 822
EcoT38I GRGCYC 2 cut(s) 8, 927
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 2 cut(s) 118, 608
FaiI YATR 7 cut(s) 116, 273, 334, 357, 606, 836, 893
FaqI GGGAC 2 cut(s) 205, 225
FatI CATG 2 cut(s) 114, 604
FauI CCCGC 1 cut(s) 280
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 7 cut(s) 32, 88, 91, 548, 707, 761, 764
FokI GGATG 2 cut(s) 151, 867
FriOI GRGCYC 2 cut(s) 8, 927
Fsp4HI GCNGC 7 cut(s) 32, 88, 91, 548, 707, 761, 764
GlaI GCGC 1 cut(s) 625
GluI GCNGC 7 cut(s) 32, 88, 91, 548, 707, 761, 764
HaeII RGCGCY 1 cut(s) 627
HaeIII GGCC 4 cut(s) 143, 187, 377, 953
HapII CCGG 5 cut(s) 101, 144, 461, 739, 794
HgaI GACGC 2 cut(s) 202, 766
HhaI GCGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 758
Hin1II CATG 2 cut(s) 118, 608
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 5 cut(s) 200, 228, 297, 407, 505
HpaII CCGG 5 cut(s) 101, 144, 461, 739, 794
HphI GGTGA 5 cut(s) 58, 500, 620, 808, 919
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 6 cut(s) 124, 227, 400, 412, 434, 504
Hpy188III TCNNGA 5 cut(s) 74, 76, 349, 425, 679
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 129, 938
HpyCH4III ACNGT 4 cut(s) 341, 390, 538, 754
HpyCH4IV ACGT 2 cut(s) 366, 522
HpyCH4V TGCA 1 cut(s) 871
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 333, 496
HpyF3I CTNAG 5 cut(s) 249, 543, 594, 600, 801
HpySE526I ACGT 2 cut(s) 366, 522
Hsp92I GRCGYC 1 cut(s) 758
Hsp92II CATG 2 cut(s) 118, 608
HspAI GCGC 1 cut(s) 624
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 621
Lsp1109I GCAGC 4 cut(s) 77, 534, 718, 775
LweI GCATC 2 cut(s) 508, 901
MaeII ACGT 2 cut(s) 366, 522
MaeIII GTNAC 3 cut(s) 629, 754, 796
MbiI CCGCTC 1 cut(s) 31
MboII GAAGA 4 cut(s) 67, 332, 464, 653
MfeI CAATTG 1 cut(s) 643
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 8, 927
MluCI AATT 4 cut(s) 643, 674, 728, 902
MlyI GAGTC 3 cut(s) 194, 306, 416
MmeI TCCRAC 2 cut(s) 130, 390
MnlI CCTC 7 cut(s) 74, 356, 576, 603, 624, 798, 845
MroNI GCCGGC 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 636
MspI CCGG 5 cut(s) 101, 144, 461, 739, 794
MspR9I CCNGG 4 cut(s) 102, 189, 512, 740
MunI CAATTG 1 cut(s) 643
MvaI CCWGG 2 cut(s) 189, 512
MwoI GCNNNNNNNGC 3 cut(s) 193, 333, 496
NaeI GCCGGC 1 cut(s) 145
NciI CCSGG 2 cut(s) 102, 740
NgoMIV GCCGGC 1 cut(s) 143
NlaIII CATG 2 cut(s) 118, 608
NmuCI GTSAC 2 cut(s) 754, 796
NspI RCATGY 1 cut(s) 118
PaeR7I CTCGAG 3 cut(s) 26, 74, 294
PceI AGGCCT 1 cut(s) 953
PdiI GCCGGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 228, 505
PflFI GACNNNGTC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 283
PinAI ACCGGT 1 cut(s) 793
PkrI GCNGC 7 cut(s) 33, 89, 92, 549, 708, 762, 765
Ple19I CGATCG 1 cut(s) 127
PleI GAGTC 3 cut(s) 194, 305, 415
PmaCI CACGTG 1 cut(s) 523
PmlI CACGTG 1 cut(s) 523
PpsI GAGTC 3 cut(s) 194, 305, 415
Ppu21I YACGTR 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 187, 510
PspCI CACGTG 1 cut(s) 523
PspEI GGTNACC 1 cut(s) 629
PspGI CCWGG 2 cut(s) 187, 510
PspPI GGNCC 1 cut(s) 152
PspXI VCTCGAGB 2 cut(s) 26, 294
PstI CTGCAG 1 cut(s) 873
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 658
PsyI GACNNNGTC 1 cut(s) 368
PvuI CGATCG 1 cut(s) 127
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 7 cut(s) 32, 88, 91, 548, 707, 761, 764
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 3 cut(s) 194, 306, 416
ScrFI CCNGG 4 cut(s) 102, 189, 512, 740
SduI GDGCHC 2 cut(s) 8, 927
SfaNI GCATC 2 cut(s) 508, 901
SfcI CTRYAG 1 cut(s) 869
Sfr274I CTCGAG 3 cut(s) 26, 74, 294
SinI GGWCC 1 cut(s) 152
SlaI CTCGAG 3 cut(s) 26, 74, 294
SmlI CTYRAG 5 cut(s) 26, 74, 294, 347, 425
SmoI CTYRAG 5 cut(s) 26, 74, 294, 347, 425
Sse9I AATT 4 cut(s) 643, 674, 728, 902
SseBI AGGCCT 1 cut(s) 953
SsiI CCGC 4 cut(s) 31, 87, 287, 761
StuI AGGCCT 1 cut(s) 953
StyD4I CCNGG 4 cut(s) 100, 187, 510, 738
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 4 cut(s) 341, 390, 538, 754
TaiI ACGT 2 cut(s) 369, 525
TaqI TCGA 7 cut(s) 27, 75, 295, 363, 651, 668, 678
TasI AATT 4 cut(s) 643, 674, 728, 902
TauI GCSGC 3 cut(s) 34, 90, 763
TfiI GAWTC 2 cut(s) 228, 505
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 2 cut(s) 754, 796
TseI GCWGC 4 cut(s) 90, 547, 706, 763
Tsp45I GTSAC 2 cut(s) 754, 796
TspDTI ATGAA 3 cut(s) 820, 880, 915
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 759
Tth111I GACNNNGTC 1 cut(s) 368
Van91I CCANNNNNTGG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 3 cut(s) 674, 728, 902
XceI RCATGY 1 cut(s) 118
XhoI CTCGAG 3 cut(s) 26, 74, 294
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.