Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005813

Physical Location & Seq

Genomic Coordinates Reverse (-)

1731309 .. 1732969

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGTGATCAAACGTGTCGGCCTTAGAATGGGATCCGGGGTTTCTAGACAAGTAGAAAGACGTAAGGCACTCACAACAGAGAAGAGAACGTTATATGATCTTCATGAATGTTGCGGCGAAGACTTTCCAGCTTGTACATTTAAGCCTGCAGATAGAAAAAACTGGATGGATGACCTACACCCTGAGAAGCTTAAGATAAACAGGATTTGTTGGCCCGGAACTCATGACTCTGCAACAGACAGGATTGGAATTCCTTTGGTTACAAGGCCTTTTGCACAATGCAAATCTCTATCTGTCTATCACCAACTTGTGCTAGGCACCAGAGTTCAGAAGGATCGACAAGTCTGTCATGGGATACTTGTCACGTACAGCATTGATGTTGTGATCAAAGATATCAAGAAGTTCTTGTCTGAAACACATTCAGAGATCATAATCCTTGAAGTCCGAACCGAGAATGGACATGATGACCCTCCTGAATTTGACAAATATTTGATGGATCACCTTGGACAATTTCTGATCCACCAAAATGACAATGTGTTCAACAAGACTCTATCAGAAGTGTTGCCAAAGAGAATAATATGCGTGTGGAAGCCAAGGAATTCACCTCAACCCAAGAGTGGGAGCCCTCTGTGGAATTCAGGTCATTTGAAGGATGACTGGATTAACACGGATTTGCCATCAACCAAATTCGAAAGCAACCTCAAGTATTTAAGTGAGCAGCCACCAGTTTCCTCGAGGAAGTTTTTTTACAGGGTGGAGAACACAGTGACACCAAAGCCTGATAAGCCAATTGTTTGTGTGAGACCTGTGACAGGAAGAATCCATGAATTTGCTAGGTTGTTTATAACTCAGTGCTTCTCTCGAGGCATTGCAGATAAGTTGCAAATTTTTTCCACAGATTTTATAGAAGAGGATTTTGTTGATGCTTGTGTTGCAGTTACATTTGCAAGAGCTGAAGGAAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PI-PLC-X

Protein Analysis

323

Amino Acids

36.98

Weight (kDa)

8.72

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38690
fragaria_vesca	FvH4_2g02060 FvH4_4g21970 FvH4_4g21970
malus_domestica	MD05G1115500.v1.1 MD05G1118000.v1.1 MD10G1118000.v1.1 MD10G1121000.v1.1
prunus_persica	Prupe.8G160300_v2.0.a1 Prupe.8G162500_v2.0.a1
pyrus_communis	pycom05g10990
rosa_chinensis	RchiOBHm_Chr6g0244491 RchiOBHm_Chr6g0245281
rosa_laevigata	RLG00000008494 RLG00000015311 RLG00000015354
rosa_rugosa	Rorug05G0509200 Rorug05G0513300
rosa_samantha	Rh6AG024500 Rh6AG028700 Rh6BG019500 Rh6BG024800 Rh6CG017100 Rh6CG022900 Rh6DG018100 Rh6DG022900
rosa_wichuraiana	Rw6G001980 Rw6G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
AasI	GACNNNNNNGTC	1 cut(s)	345
AbsI	CCTCGAGG	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	317
AciI	CCGC	1 cut(s)	114
AclI	AACGTT	1 cut(s)	89
AclWI	GGATC	5 cut(s)	27, 40, 342, 504, 511
AcsI	RAATTY	7 cut(s)	249, 476, 598, 634, 686, 827, 885
AfaI	GTAC	2 cut(s)	136, 368
AfiI	CCNNNNNNNGG	4 cut(s)	28, 617, 618, 812
AflII	CTTAAG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	440, 541, 649
AluBI	AGCT	3 cut(s)	131, 190, 953
AluI	AGCT	3 cut(s)	131, 190, 953
Alw26I	GTCTC	1 cut(s)	796
AlwI	GGATC	5 cut(s)	27, 40, 342, 504, 511
Ama87I	CYCGRG	2 cut(s)	733, 861
AoxI	GGCC	3 cut(s)	19, 212, 266
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	7 cut(s)	249, 476, 598, 634, 686, 827, 885
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	2 cut(s)	37, 216
AsuHPI	GGTGA	4 cut(s)	16, 293, 491, 594
AsuII	TTCGAA	1 cut(s)	690
AvaI	CYCGRG	2 cut(s)	733, 861
BamHI	GGATCC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	626
BarI	GAAGNNNNNNTAC	2 cut(s)	731, 763
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	3 cut(s)	160, 487, 685
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	2 cut(s)	6, 384
BcnI	CCSGG	2 cut(s)	37, 216
BcoDI	GTCTC	1 cut(s)	796
BfaI	CTAG	3 cut(s)	45, 314, 834
BfmI	CTRYAG	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	2 cut(s)	115, 719
BlsI	GCNGC	2 cut(s)	116, 720
Bme1390I	CCNGG	2 cut(s)	37, 216
BmeT110I	CYCGRG	2 cut(s)	733, 861
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	3 cut(s)	34, 319, 623
BmrFI	CCNGG	2 cut(s)	37, 216
BmsI	GCATC	1 cut(s)	913
BpiI	GAAGAC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	686
BpuMI	CCSGG	2 cut(s)	37, 216
BsaAI	YACGTR	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	796
BsaJI	CCNNGG	3 cut(s)	36, 502, 593
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 617, 618, 812
Bse1I	ACTGG	3 cut(s)	167, 662, 725
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	431
BseDI	CCNNGG	3 cut(s)	36, 502, 593
BseGI	GGATG	3 cut(s)	171, 175, 658
BseJI	GATNNNNATC	1 cut(s)	431
BseLI	CCNNNNNNNGG	4 cut(s)	28, 617, 618, 812
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	2 cut(s)	174, 863
BseNI	ACTGG	3 cut(s)	167, 662, 725
BseXI	GCAGC	1 cut(s)	730
BshFI	GGCC	3 cut(s)	21, 214, 268
BshNI	GGYRCC	1 cut(s)	317
BsiHKCI	CYCGRG	2 cut(s)	733, 861
BsiSI	CCGG	2 cut(s)	36, 216
BslI	CCNNNNNNNGG	4 cut(s)	28, 617, 618, 812
BsmAI	GTCTC	1 cut(s)	796
BsnI	GGCC	3 cut(s)	21, 214, 268
Bso31I	GGTCTC	1 cut(s)	796
BsoBI	CYCGRG	2 cut(s)	733, 861
Bsp119I	TTCGAA	1 cut(s)	690
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp1407I	TGTACA	1 cut(s)	134
Bsp143I	GATC	8 cut(s)	6, 32, 97, 334, 384, 426, 496, 516
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	3 cut(s)	21, 214, 268
BspCNI	CTCAG	2 cut(s)	175, 862
BspHI	TCATGA	2 cut(s)	103, 223
BspLI	GGNNCC	3 cut(s)	34, 319, 623
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	5 cut(s)	27, 40, 342, 504, 511
BspT104I	TTCGAA	1 cut(s)	690
BspT107I	GGYRCC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	796
BsrDI	GCAATG	1 cut(s)	867
BsrGI	TGTACA	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	167, 662, 725
BssECI	CCNNGG	3 cut(s)	36, 502, 593
BssMI	GATC	8 cut(s)	6, 32, 97, 334, 384, 426, 496, 516
BssT1I	CCWWGG	2 cut(s)	502, 593
Bst4CI	ACNGT	1 cut(s)	766
Bst6I	CTCTTC	2 cut(s)	77, 903
BstAFI	CTTAAG	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	690
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	23, 183, 849
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	3 cut(s)	171, 175, 658
BstKTI	GATC	8 cut(s)	9, 35, 100, 337, 387, 429, 499, 519
BstMAI	GTCTC	1 cut(s)	796
BstMBI	GATC	8 cut(s)	6, 32, 97, 334, 384, 426, 496, 516
BstMWI	GCNNNNNNNGC	2 cut(s)	784, 932
BstSCI	CCNGG	2 cut(s)	35, 214
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	730
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	21, 214, 268
BtsCI	GGATG	3 cut(s)	171, 175, 658
BtsIMutI	CAGTG	2 cut(s)	771, 857
Cac8I	GCNNGC	1 cut(s)	147
CciI	TCATGA	2 cut(s)	103, 223
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	135, 367
CviAII	CATG	5 cut(s)	104, 224, 350, 461, 824
CviQI	GTAC	2 cut(s)	135, 367
DdeI	CTNAG	3 cut(s)	23, 183, 849
DpnI	GATC	8 cut(s)	8, 34, 99, 336, 386, 428, 498, 518
DpnII	GATC	8 cut(s)	6, 32, 97, 334, 384, 426, 496, 516
DrdI	GACNNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	77, 903
EarI	CTCTTC	2 cut(s)	77, 903
Eco130I	CCWWGG	2 cut(s)	502, 593
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	796
Eco32I	GATATC	1 cut(s)	394
Eco88I	CYCGRG	2 cut(s)	733, 861
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoRI	GAATTC	3 cut(s)	249, 598, 634
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	502, 593
EcoT38I	GRGCYC	1 cut(s)	626
ErhI	CCWWGG	2 cut(s)	502, 593
FaeI	CATG	5 cut(s)	107, 227, 353, 464, 827
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	5 cut(s)	103, 223, 349, 460, 823
FbaI	TGATCA	2 cut(s)	6, 384
Fnu4HI	GCNGC	2 cut(s)	115, 719
FokI	GGATG	3 cut(s)	178, 182, 665
FriOI	GRGCYC	1 cut(s)	626
Fsp4HI	GCNGC	2 cut(s)	115, 719
FspBI	CTAG	3 cut(s)	45, 314, 834
GluI	GCNGC	2 cut(s)	115, 719
HaeIII	GGCC	3 cut(s)	21, 214, 268
HapII	CCGG	2 cut(s)	36, 216
Hin1II	CATG	5 cut(s)	107, 227, 353, 464, 827
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	227, 547, 819
HpaII	CCGG	2 cut(s)	36, 216
HphI	GGTGA	4 cut(s)	16, 293, 491, 594
Hpy188I	TCNGA	6 cut(s)	330, 412, 424, 446, 516, 556
Hpy188III	TCNNGA	6 cut(s)	45, 104, 224, 397, 473, 861
HpyAV	CCTTC	3 cut(s)	325, 643, 950
HpyCH4III	ACNGT	1 cut(s)	766
HpyCH4IV	ACGT	4 cut(s)	13, 61, 89, 365
HpyCH4V	TGCA	8 cut(s)	149, 233, 275, 282, 872, 883, 935, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	784, 932
HpyF3I	CTNAG	3 cut(s)	23, 183, 849
HpySE526I	ACGT	4 cut(s)	13, 61, 89, 365
Hsp92II	CATG	5 cut(s)	107, 227, 353, 464, 827
Ksp22I	TGATCA	2 cut(s)	6, 384
Kzo9I	GATC	8 cut(s)	6, 32, 97, 334, 384, 426, 496, 516
LmnI	GCTCC	1 cut(s)	621
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	1 cut(s)	913
MaeI	CTAG	3 cut(s)	45, 314, 834
MaeII	ACGT	4 cut(s)	13, 61, 89, 365
MaeIII	GTNAC	5 cut(s)	259, 361, 766, 808, 937
MalI	GATC	8 cut(s)	8, 34, 99, 336, 386, 428, 498, 518
MboI	GATC	8 cut(s)	6, 32, 97, 334, 384, 426, 496, 516
MboII	GAAGA	5 cut(s)	92, 94, 131, 828, 920
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	9 cut(s)	249, 476, 509, 598, 634, 686, 789, 827, 885
MlyI	GAGTC	2 cut(s)	221, 541
MnlI	CCTC	8 cut(s)	480, 615, 636, 710, 729, 742, 857, 904
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	4 cut(s)	141, 192, 663, 710
MslI	CAYNNNNRTG	1 cut(s)	525
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	2 cut(s)	36, 216
MspR9I	CCNGG	2 cut(s)	37, 216
MunI	CAATTG	1 cut(s)	789
MwoI	GCNNNNNNNGC	2 cut(s)	784, 932
NciI	CCSGG	2 cut(s)	37, 216
NdeII	GATC	8 cut(s)	6, 32, 97, 334, 384, 426, 496, 516
NlaIII	CATG	5 cut(s)	107, 227, 353, 464, 827
NlaIV	GGNNCC	3 cut(s)	34, 319, 623
NmuCI	GTSAC	3 cut(s)	361, 766, 808
NspV	TTCGAA	1 cut(s)	690
PaeR7I	CTCGAG	2 cut(s)	733, 861
PagI	TCATGA	2 cut(s)	103, 223
PceI	AGGCCT	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	819
PkrI	GCNGC	2 cut(s)	116, 720
PleI	GAGTC	2 cut(s)	221, 541
PpsI	GAGTC	2 cut(s)	221, 541
Ppu21I	YACGTR	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	845
Psp1406I	AACGTT	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	34, 319, 623
PspPI	GGNCC	1 cut(s)	213
PspXI	VCTCGAGB	1 cut(s)	733
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	2 cut(s)	136, 368
RsaNI	GTAC	2 cut(s)	135, 367
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	4 cut(s)	141, 192, 663, 710
SatI	GCNGC	2 cut(s)	115, 719
Sau3AI	GATC	8 cut(s)	6, 32, 97, 334, 384, 426, 496, 516
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	2 cut(s)	221, 541
ScrFI	CCNGG	2 cut(s)	37, 216
SduI	GDGCHC	1 cut(s)	626
SfaNI	GCATC	1 cut(s)	913
SfcI	CTRYAG	1 cut(s)	147
Sfr274I	CTCGAG	2 cut(s)	733, 861
SfuI	TTCGAA	1 cut(s)	690
SlaI	CTCGAG	2 cut(s)	733, 861
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	4 cut(s)	191, 701, 733, 861
SmoI	CTYRAG	4 cut(s)	191, 701, 733, 861
Sse9I	AATT	9 cut(s)	249, 476, 509, 598, 634, 686, 789, 827, 885
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	114
SspI	AATATT	1 cut(s)	488
SspMI	CTAG	3 cut(s)	45, 314, 834
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	35, 214
StyI	CCWWGG	2 cut(s)	502, 593
TaaI	ACNGT	1 cut(s)	766
TaiI	ACGT	4 cut(s)	16, 64, 92, 368
TaqI	TCGA	4 cut(s)	337, 690, 734, 862
TasI	AATT	9 cut(s)	249, 476, 509, 598, 634, 686, 789, 827, 885
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	819
Tru1I	TTAA	4 cut(s)	141, 192, 663, 710
Tru9I	TTAA	4 cut(s)	141, 192, 663, 710
TscAI	CASTG	2 cut(s)	771, 857
TseFI	GTSAC	3 cut(s)	361, 766, 808
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	3 cut(s)	361, 766, 808
TspDTI	ATGAA	3 cut(s)	92, 120, 840
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	2 cut(s)	771, 857
Vha464I	CTTAAG	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	810
XapI	RAATTY	7 cut(s)	249, 476, 598, 634, 686, 827, 885
XbaI	TCTAGA	1 cut(s)	44
XhoI	CTCGAG	2 cut(s)	733, 861
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	3 cut(s)	45, 314, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.