Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002847

Physical Location & Seq

Genomic Coordinates Forward (+)

18286707 .. 18288469

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCATCGTTTTGCAGATCAGCGTTAATGGCAGGTTCCAGAAACTTAGTATCAAGATCCAGAACCGTAACTCAAAAGTCCCTCAATCTTAAACCCACAACTACTTCATCTCCTTTCGCTTCAATGTCTCAATCCATCCCTCGCGCTTCGAGGGTTCTCTCTGCTTTGGGAAGTGTTGAAACGATGATTCCACTTCACAGTGCCGTTGCTTCAGCTCGTCTCCGGTCAAGCATCGCTGCTGATTCCTCTTGTTGGAGCTTGCTTTCTCAGGGACTTGCAACGCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.06

Weight (kDa)

11.79

Isoelectric Point (pI)

65.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39300 AT4G39300
fragaria_vesca	FvH4_2g08780 FvH4_2g08780 FvH4_2g08780 FvH4_2g08780
malus_domestica	MD05G1030300.v1.1 MD10G1031700.v1.1 MD10G1076400.v1.1
prunus_persica	Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1
pyrus_communis	pycom05g02150 pycom10g05980
rosa_chinensis	RchiOBHm_Chr5g0010131 RchiOBHm_Chr6g0264231
rosa_multiflora	Rmu_co8277883.1_g000001 Rmu_sc0000818.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431630 Rroxscaffold_1G00066060 Rroxscaffold_7G00203380
rosa_rugosa	Rorug06G0011100 Rorug06G0011100 Rorug06G0011200 Rorug06G0011300
rosa_samantha	Rh5AG080100 Rh5CG088200 Rh5DG075500 Rh6AG130400 Rh6BG127700 Rh6DG113000
rosa_wichuraiana	Rw5G007410 Rw6G011360 Rw6G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccII	CGCG	1 cut(s)	144
AclWI	GGATC	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	123, 179
AluBI	AGCT	2 cut(s)	215, 258
AluI	AGCT	2 cut(s)	215, 258
Alw26I	GTCTC	2 cut(s)	132, 224
AlwI	GGATC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	132, 224
BfuAI	ACCTGC	1 cut(s)	23
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	2 cut(s)	14, 240
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	2 cut(s)	64, 285
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	132, 224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	64, 285
Bsp143I	GATC	2 cut(s)	17, 56
BspCNI	CTCAG	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	51
BssMI	GATC	2 cut(s)	17, 56
Bst4CI	ACNGT	2 cut(s)	67, 200
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	46, 267
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	20, 59
BstMAI	GTCTC	2 cut(s)	132, 224
BstMBI	GATC	2 cut(s)	17, 56
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	146
CviJI	RGCY	2 cut(s)	215, 258
CviKI_1	RGCY	2 cut(s)	215, 258
DdeI	CTNAG	2 cut(s)	46, 267
DpnI	GATC	2 cut(s)	19, 58
DpnII	GATC	2 cut(s)	17, 56
Eco57I	CTGAAG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	224
FaqI	GGGAC	2 cut(s)	64, 285
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	237
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	237
HapII	CCGG	1 cut(s)	223
HhaI	GCGC	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	187, 242
HpaII	CCGG	1 cut(s)	223
Hpy188III	TCNNGA	3 cut(s)	39, 54, 60
HpyCH4III	ACNGT	2 cut(s)	67, 200
HpyCH4V	TGCA	2 cut(s)	15, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	46, 267
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	17, 56
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	5 cut(s)	18, 52, 73, 236, 254
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	14, 240
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	19, 58
MboI	GATC	2 cut(s)	17, 56
MflI	RGATCY	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	92, 144, 150, 256
MseI	TTAA	2 cut(s)	26, 90
MspI	CCGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	17, 56
NlaIV	GGNNCC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	187, 242
PkrI	GCNGC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	26, 90
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	17, 56
SetI	ASST	3 cut(s)	37, 217, 260
SfaNI	GCATC	2 cut(s)	14, 240
TaaI	ACNGT	2 cut(s)	67, 200
TaqI	TCGA	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	187, 242
Tru1I	TTAA	2 cut(s)	26, 90
Tru9I	TTAA	2 cut(s)	26, 90
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.