Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002847

Physical Location & Seq

Genomic Coordinates Reverse (-)

4060077 .. 4063112

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1031700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTTCCTTCTGCAGATCAGCTCTAATGGCGGGCTCAAGGTCCATAGCTCGCTCAAGAGCCCTCAGCCAAACCTCCCTGAACTCCCTAAACCCCGCAGCCATGGCATCCCCGTTTGCTTCCGCCACCAGAACAATTCCTTGCGCTACAAGATTCGTTTCGGTGTTGGGATGCATGGAGTCAATGATGCCGCTTCACAGTGCCATTGCTTCTGCTCGGCTTACATCCAACATTGCCGTCGATTCCACCTGCTGGAGTTCCCTTTCTCTTGGGCTCCTCGACCGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.03

Weight (kDa)

10.35

Isoelectric Point (pI)

63.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39300 AT4G39300
fragaria_vesca	FvH4_2g08780 FvH4_2g08780 FvH4_2g08780 FvH4_2g08780
malus_domestica	MD05G1030300.v1.1 MD10G1031700.v1.1 MD10G1076400.v1.1
prunus_persica	Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1
pyrus_communis	pycom05g02150 pycom10g05980
rosa_chinensis	RchiOBHm_Chr5g0010131 RchiOBHm_Chr6g0264231
rosa_multiflora	Rmu_co8277883.1_g000001 Rmu_sc0000818.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431630 Rroxscaffold_1G00066060 Rroxscaffold_7G00203380
rosa_rugosa	Rorug06G0011100 Rorug06G0011100 Rorug06G0011200 Rorug06G0011300
rosa_samantha	Rh5AG080100 Rh5CG088200 Rh5DG075500 Rh6AG130400 Rh6BG127700 Rh6DG113000
rosa_wichuraiana	Rw5G007410 Rw6G011360 Rw6G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	252
AciI	CCGC	4 cut(s)	32, 96, 123, 191
AfiI	CCNNNNNNNGG	1 cut(s)	252
AluBI	AGCT	3 cut(s)	23, 50, 288
AluI	AGCT	3 cut(s)	23, 50, 288
ApeKI	GCWGC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	42
BanII	GRGCYC	3 cut(s)	38, 64, 276
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	99, 191
BlsI	GCNGC	2 cut(s)	100, 192
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	275
BmsI	GCATC	3 cut(s)	116, 161, 177
BpmI	CTGGAG	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	22, 40
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse3DI	GCAATG	2 cut(s)	204, 231
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	3 cut(s)	107, 176, 224
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	2 cut(s)	204, 231
BseMII	CTCAG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	38, 64, 276
Bsp143I	GATC	1 cut(s)	17
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	4 cut(s)	32, 96, 123, 191
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	275
BspMAI	CTGCAG	1 cut(s)	17
BspMI	ACCTGC	1 cut(s)	257
BsrDI	GCAATG	2 cut(s)	204, 231
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	34, 52
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	107, 176, 224
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 104
BstSFI	CTRYAG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	107, 176, 224
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	34, 52
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	42
CviAII	CATG	2 cut(s)	103, 175
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	3 cut(s)	38, 64, 276
Eco47I	GGWCC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	3 cut(s)	38, 64, 276
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	106, 178
FaiI	YATR	3 cut(s)	47, 104, 176
FatI	CATG	2 cut(s)	102, 174
FauI	CCCGC	2 cut(s)	25, 103
Fnu4HI	GCNGC	2 cut(s)	99, 191
FokI	GGATG	3 cut(s)	94, 183, 211
FriOI	GRGCYC	3 cut(s)	38, 64, 276
Fsp4HI	GCNGC	2 cut(s)	99, 191
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	99, 191
GsuI	CTGGAG	1 cut(s)	274
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	106, 178
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	3 cut(s)	153, 179, 242
Hpy188III	TCNNGA	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	15, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 104
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	106, 178
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	4 cut(s)	92, 142, 238, 262
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	3 cut(s)	116, 161, 177
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MhlI	GDGCHC	3 cut(s)	38, 64, 276
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	74, 85, 287
Mph1103I	ATGCAT	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	29, 104
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	106, 178
NlaIV	GGNNCC	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	176
PaqCI	CACCTGC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	153, 242
PflMI	CCANNNNNTGG	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	100, 192
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	17
SatI	GCNGC	2 cut(s)	99, 191
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	38, 64, 276
SetI	ASST	6 cut(s)	25, 44, 52, 77, 251, 290
SfaNI	GCATC	3 cut(s)	116, 161, 177
SfcI	CTRYAG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	37, 55
SmoI	CTYRAG	2 cut(s)	37, 55
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	4 cut(s)	32, 96, 123, 191
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	240, 279
TasI	AATT	1 cut(s)	135
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	153, 242
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	98
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.