Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002847

Physical Location & Seq

Genomic Coordinates Forward (+)

10877802 .. 10880397

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1076400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTTCCTTCTGCAGATCAGCTCTAATGGCGGGCTCAAGGTCCATAGCTCGCTCAAGAGCCCTCACCCAAACCTCCCTTAACTCCTTAAACCCGGCAGCCATGGCGTCCCCGTTTGCTTCCGCCACCAGAACAATTCCTTGTGCTACAAGATTCGTTTCGGTATTGGGATGCATGGAGTCAATGATGCCGCTTCACAGCGCCATTGCTTCTGCTCGGCTTACATCCAACATTGCCGTCGATTCCACCTGCTGGAGCTCCCTTTCTCTTGGTCTTGCATCACCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

9.94

Weight (kDa)

10.38

Isoelectric Point (pI)

61.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39300 AT4G39300
fragaria_vesca	FvH4_2g08780 FvH4_2g08780 FvH4_2g08780 FvH4_2g08780
malus_domestica	MD05G1030300.v1.1 MD10G1031700.v1.1 MD10G1076400.v1.1
prunus_persica	Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1
pyrus_communis	pycom05g02150 pycom10g05980
rosa_chinensis	RchiOBHm_Chr5g0010131 RchiOBHm_Chr6g0264231
rosa_multiflora	Rmu_co8277883.1_g000001 Rmu_sc0000818.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431630 Rroxscaffold_1G00066060 Rroxscaffold_7G00203380
rosa_rugosa	Rorug06G0011100 Rorug06G0011100 Rorug06G0011200 Rorug06G0011300
rosa_samantha	Rh5AG080100 Rh5CG088200 Rh5DG075500 Rh6AG130400 Rh6BG127700 Rh6DG113000
rosa_wichuraiana	Rw5G007410 Rw6G011360 Rw6G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	252
AciI	CCGC	3 cut(s)	32, 123, 191
AcyI	GRCGYC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	252
AleI	CACNNNNGTG	1 cut(s)	286
AluBI	AGCT	3 cut(s)	23, 50, 258
AluI	AGCT	3 cut(s)	23, 50, 258
Alw21I	GWGCWC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	42
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	58, 273
AvaII	GGWCC	1 cut(s)	42
BanII	GRGCYC	3 cut(s)	38, 64, 260
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	13
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	99, 191
BlsI	GCNGC	2 cut(s)	100, 192
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	3 cut(s)	161, 177, 287
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	2 cut(s)	22, 40
BpuMI	CCSGG	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse3DI	GCAATG	2 cut(s)	204, 231
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	176, 224
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	2 cut(s)	204, 231
BseXI	GCAGC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	94
Bsp1286I	GDGCHC	3 cut(s)	38, 64, 260
Bsp143I	GATC	1 cut(s)	17
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	3 cut(s)	32, 123, 191
BspMAI	CTGCAG	1 cut(s)	17
BspMI	ACCTGC	1 cut(s)	257
BsrDI	GCAATG	2 cut(s)	204, 231
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	34, 52
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	176, 224
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 104
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	176, 224
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	34, 52
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	42
CseI	GACGC	1 cut(s)	96
CviAII	CATG	2 cut(s)	103, 175
CviJI	RGCY	8 cut(s)	5, 23, 36, 50, 62, 101, 220, 258
CviKI_1	RGCY	8 cut(s)	5, 23, 36, 50, 62, 101, 220, 258
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	3 cut(s)	38, 64, 260
Eco47I	GGWCC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	3 cut(s)	38, 64, 260
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	106, 178
FaiI	YATR	3 cut(s)	47, 104, 176
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	2 cut(s)	102, 174
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	99, 191
FokI	GGATG	2 cut(s)	183, 211
FriOI	GRGCYC	3 cut(s)	38, 64, 260
Fsp4HI	GCNGC	2 cut(s)	99, 191
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	99, 191
GsuI	CTGGAG	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	204
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	106, 178
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	3 cut(s)	153, 179, 242
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	58, 273
Hpy188III	TCNNGA	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	15, 174, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 104
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	106, 178
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	255, 263
LpnPI	CCDG	4 cut(s)	108, 142, 238, 262
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	3 cut(s)	161, 177, 287
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MhlI	GDGCHC	3 cut(s)	38, 64, 260
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	74, 85
Mph1103I	ATGCAT	1 cut(s)	176
MseI	TTAA	2 cut(s)	81, 89
MslI	CAYNNNNRTG	1 cut(s)	286
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	29, 104
NciI	CCSGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	106, 178
NmeAIII	GCCGAG	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	153, 242
PflMI	CCANNNNNTGG	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	100, 192
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	81, 89
SatI	GCNGC	2 cut(s)	99, 191
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	3 cut(s)	38, 64, 260
SetI	ASST	6 cut(s)	25, 44, 52, 77, 251, 260
SfaNI	GCATC	3 cut(s)	161, 177, 287
SfcI	CTRYAG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	286
SmlI	CTYRAG	2 cut(s)	37, 55
SmoI	CTYRAG	2 cut(s)	37, 55
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	3 cut(s)	32, 123, 191
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	135
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	153, 242
Tru1I	TTAA	2 cut(s)	81, 89
Tru9I	TTAA	2 cut(s)	81, 89
TseI	GCWGC	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.