Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002847

Physical Location & Seq

Genomic Coordinates Reverse (-)

4878978 .. 4881140

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1030300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCTTCCTTCTACAGGTCAGCTCTAATGGCAAGAGCCCTCACCCTAACCTCCCTTAACTCCCTAAACCCCGCAGCCATGGCGTCCCCGTTTGCTTCCGCCACCAGAACAGTTCCTTGCGCTACAAGTTCCTCGGTGACAAGGACTCCATGCTCCGGTCATTTCAAGCTTTCAACCAAATTGGCCTGCATATTGGTTCCTCCATCCTTTGTTCTTTTCCCTTTCCCATTGCTTTCTGGCAATTGCATTGTGGTTTTCTCGACCGAGGCTGAGCGTGAACGTTGCCCCGGTTCGACCAAGTTGTACTGCACTACTCTCCTCCTTCCTTGTGTGCCCATGGCATATAAATTGCTATTCGTTAAACGGTTTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.4

Weight (kDa)

9.62

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39300 AT4G39300
fragaria_vesca	FvH4_2g08780 FvH4_2g08780 FvH4_2g08780 FvH4_2g08780
malus_domestica	MD05G1030300.v1.1 MD10G1031700.v1.1 MD10G1076400.v1.1
prunus_persica	Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1
pyrus_communis	pycom05g02150 pycom10g05980
rosa_chinensis	RchiOBHm_Chr5g0010131 RchiOBHm_Chr6g0264231
rosa_multiflora	Rmu_co8277883.1_g000001 Rmu_sc0000818.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431630 Rroxscaffold_1G00066060 Rroxscaffold_7G00203380
rosa_rugosa	Rorug06G0011100 Rorug06G0011100 Rorug06G0011200 Rorug06G0011300
rosa_samantha	Rh5AG080100 Rh5CG088200 Rh5DG075500 Rh6AG130400 Rh6BG127700 Rh6DG113000
rosa_wichuraiana	Rw5G007410 Rw6G011360 Rw6G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 99
AclI	AACGTT	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	15, 155
AgsI	TTSAA	2 cut(s)	166, 174
AluBI	AGCT	2 cut(s)	23, 169
AluI	AGCT	2 cut(s)	23, 169
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	34, 148
BaeGI	GKGCMC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	13
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	288
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	5 cut(s)	78, 132, 264, 286, 336
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 155
Bse3DI	GCAATG	1 cut(s)	227
BseDI	CCNNGG	5 cut(s)	78, 132, 264, 286, 336
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	2 cut(s)	15, 155
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	156, 288
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	15, 155
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	40, 336
Bsp1720I	GCTNAGC	1 cut(s)	270
Bsp19I	CCATGG	2 cut(s)	78, 336
BspACI	CCGC	2 cut(s)	72, 99
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	227
BssECI	CCNNGG	5 cut(s)	78, 132, 264, 286, 336
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	2 cut(s)	78, 336
Bst4CI	ACNGT	2 cut(s)	112, 366
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	2 cut(s)	78, 336
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	122
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 80
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	2 cut(s)	78, 336
BtsCI	GGATG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	122
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	79, 150, 337
CviJI	RGCY	7 cut(s)	5, 23, 38, 77, 169, 185, 269
CviKI_1	RGCY	7 cut(s)	5, 23, 38, 77, 169, 185, 269
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	78, 336
Eco24I	GRGCYC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	78, 336
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	78, 336
FaeI	CATG	3 cut(s)	82, 153, 340
FaiI	YATR	6 cut(s)	80, 151, 191, 338, 343, 345
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	78, 149, 336
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	156, 288
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	82, 153, 340
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	156, 288
HphI	GGTGA	2 cut(s)	34, 148
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	19, 332
HpyCH4III	ACNGT	2 cut(s)	112, 366
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	189, 246, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 80
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	280
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	82, 153, 340
HspAI	GCGC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	5 cut(s)	118, 169, 199, 222, 301
Lsp1109I	GCAGC	1 cut(s)	86
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	40, 336
MluCI	AATT	3 cut(s)	179, 241, 347
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	6 cut(s)	50, 61, 142, 210, 259, 329
MseI	TTAA	2 cut(s)	57, 360
MspI	CCGG	2 cut(s)	156, 288
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	29, 80
NciI	CCSGG	1 cut(s)	288
NcoI	CCATGG	2 cut(s)	78, 336
NlaIII	CATG	3 cut(s)	82, 153, 340
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp1406I	AACGTT	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	198
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	57, 360
SatI	GCNGC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	40, 336
SetI	ASST	5 cut(s)	20, 25, 53, 171, 283
SfcI	CTRYAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	179, 241, 347
SsiI	CCGC	2 cut(s)	72, 99
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	78, 336
TaaI	ACNGT	2 cut(s)	112, 366
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	2 cut(s)	260, 293
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	179, 241, 347
TatI	WGTACW	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	57, 360
Tru9I	TTAA	2 cut(s)	57, 360
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	360
XagI	CCTNNNNNAGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.