Rorug06G0011300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002847
Physical Location & Seq
Forward (+)
1550220 .. 1550958
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0011300.1

Sequence Viewer

Length: 732 bp
ATGGTGGAGAATGAAAGCTGTGGGAGTATAGCACTTTCATTGCTAACACGCTGCCTTAAGTTTCAACGTTGTGGTTCTTCCGTACATTCTTTTCATAAATCATTTGACCATAAAAGATTTCACTTTGTTGCTCCTGGAAATGAAATACCCGAGTGGTACAATCACCAAAGTGTAGGGTCTCTGATAACTGTAGAGTTGCATCCAGGTTGGTTTACTAACAAGTGGATGGGATTCACCTTTTGTGTCGTTTTTAGCCTCCTCAAAACACTCCCGCCTTGTGTTCGGTGGGGCATTAATTGCTCATTGAAGGCCAATGGACGATCATTGGGTGGCACAGGTCTGACAACTCCTGTTCGGGGAAAGTGGGTTCGACCTGTGTTGGATCACATTTGGTTCTTCTATGCGAATTGTGATCACGTTTGCTATGCACATGAGTGGCAGGATATTTACTACCAGCTTGAATTTTCATTTAAACTCACCTTGTACGAGGACATGCATGGAGTGGAGATTCCTCATGGAGTGGAGATTCCGCAAGTGAAGAAGTGTGGGATCCGTGTGATATATGAGGAAGATGTGGAGGAGTTTTGGCAAACATTATTGAAGGAGAGCAATCCCAAGCGAGGGCTTCAACACAATGATGATGATGCAGCATCTAGTAGTGCAAGTCAGGCTCATCCAAAAAGAATTAAACAACTCCTCCTTGATGGCGCAGGCCCCAGTGGAAGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.67

Weight (kDa)

6.88

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 45 - 193 1.1e-19 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 272, 530
AclI AACGTT 1 cut(s) 67
AclWI GGATC 3 cut(s) 390, 544, 557
AcsI RAATTY 1 cut(s) 461
AfaI GTAC 3 cut(s) 84, 158, 485
AfiI CCNNNNNNNGG 3 cut(s) 356, 620, 621
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 5 cut(s) 65, 307, 461, 601, 629
AjnI CCWGG 2 cut(s) 133, 202
AleI CACNNNNGTG 2 cut(s) 168, 433
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 2 cut(s) 18, 457
AluI AGCT 2 cut(s) 18, 457
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 3 cut(s) 390, 544, 557
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 309, 712
ApeKI GCWGC 2 cut(s) 51, 647
ApoI RAATTY 1 cut(s) 461
AseI ATTAAT 1 cut(s) 294
AspLEI GCGC 1 cut(s) 710
AspS9I GGNCC 1 cut(s) 713
AsuHPI GGTGA 3 cut(s) 155, 226, 469
AvaI CYCGRG 1 cut(s) 149
BamHI GGATCC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 38, 659
BccI CCATC 2 cut(s) 220, 698
BciT130I CCWGG 2 cut(s) 135, 204
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 189
BfrI CTTAAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 52, 648
BlsI GCNGC 2 cut(s) 53, 649
Bme1390I CCNGG 2 cut(s) 135, 204
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 713
BmiI GGNNCC 2 cut(s) 551, 715
BmrFI CCNGG 2 cut(s) 135, 204
BmrI ACTGGG 1 cut(s) 711
BmsI GCATC 3 cut(s) 208, 634, 659
BmuI ACTGGG 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 620, 621
Bse1I ACTGG 1 cut(s) 717
Bse3DI GCAATG 1 cut(s) 38
BseBI CCWGG 2 cut(s) 135, 204
BseGI GGATG 3 cut(s) 199, 231, 673
BseLI CCNNNNNNNGG 3 cut(s) 356, 620, 621
BseMI GCAATG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 717
BseRI GAGGAG 3 cut(s) 248, 593, 686
BseXI GCAGC 2 cut(s) 38, 659
BshFI GGCC 2 cut(s) 311, 714
BsiHKCI CYCGRG 1 cut(s) 149
BslI CCNNNNNNNGG 3 cut(s) 356, 620, 621
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 2 cut(s) 311, 714
Bso31I GGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 4 cut(s) 320, 382, 412, 549
BspACI CCGC 2 cut(s) 272, 530
BspANI GGCC 2 cut(s) 311, 714
BspLI GGNNCC 2 cut(s) 551, 715
BspPI GGATC 3 cut(s) 390, 544, 557
BspTI CTTAAG 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 38
BsrI ACTGG 1 cut(s) 717
BssMI GATC 4 cut(s) 320, 382, 412, 549
Bst2UI CCWGG 2 cut(s) 135, 204
Bst4CI ACNGT 1 cut(s) 190
BstAFI CTTAAG 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 1 cut(s) 729
BstF5I GGATG 3 cut(s) 199, 231, 673
BstHHI GCGC 1 cut(s) 710
BstKTI GATC 4 cut(s) 323, 385, 415, 552
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 4 cut(s) 320, 382, 412, 549
BstMWI GCNNNNNNNGC 2 cut(s) 297, 668
BstNI CCWGG 2 cut(s) 135, 204
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 2 cut(s) 133, 202
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 38, 659
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BsuRI GGCC 2 cut(s) 311, 714
BtsCI GGATG 3 cut(s) 199, 231, 673
BtsIMutI CAGTG 1 cut(s) 724
Cac8I GCNNGC 1 cut(s) 712
CfoI GCGC 1 cut(s) 710
Cfr13I GGNCC 1 cut(s) 713
Csp6I GTAC 3 cut(s) 83, 157, 484
CviAII CATG 4 cut(s) 431, 493, 497, 515
CviJI RGCY 8 cut(s) 18, 255, 311, 457, 625, 671, 714, 726
CviKI_1 RGCY 8 cut(s) 18, 255, 311, 457, 625, 671, 714, 726
CviQI GTAC 3 cut(s) 83, 157, 484
DdeI CTNAG 1 cut(s) 729
DpnI GATC 4 cut(s) 322, 384, 414, 551
DpnII GATC 4 cut(s) 320, 382, 412, 549
DraI TTTAAA 1 cut(s) 472
Eco31I GGTCTC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 713
EcoRII CCWGG 2 cut(s) 133, 202
EcoT22I ATGCAT 1 cut(s) 498
FaeI CATG 4 cut(s) 434, 496, 500, 518
FatI CATG 4 cut(s) 430, 492, 496, 514
FauI CCCGC 1 cut(s) 279
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 52, 648
FokI GGATG 3 cut(s) 186, 238, 660
Fsp4HI GCNGC 2 cut(s) 52, 648
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 709
GluI GCNGC 2 cut(s) 52, 648
HaeIII GGCC 2 cut(s) 311, 714
HhaI GCGC 1 cut(s) 710
Hin1II CATG 4 cut(s) 434, 496, 500, 518
Hin6I GCGC 1 cut(s) 708
HinP1I GCGC 1 cut(s) 708
HinfI GANTC 3 cut(s) 231, 508, 526
HphI GGTGA 3 cut(s) 155, 226, 469
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 183, 342
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 301, 595
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 67, 417
HpyCH4V TGCA 5 cut(s) 199, 428, 496, 647, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 668
HpyF3I CTNAG 1 cut(s) 729
HpySE526I ACGT 2 cut(s) 67, 417
Hsp92II CATG 4 cut(s) 434, 496, 500, 518
HspAI GCGC 1 cut(s) 708
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 320, 382, 412, 549
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 2 cut(s) 38, 659
LweI GCATC 3 cut(s) 208, 634, 659
MaeI CTAG 1 cut(s) 654
MaeII ACGT 2 cut(s) 67, 417
MalI GATC 4 cut(s) 322, 384, 414, 551
MboI GATC 4 cut(s) 320, 382, 412, 549
MboII GAAGA 4 cut(s) 69, 388, 550, 581
MflI RGATCY 1 cut(s) 549
MluCI AATT 4 cut(s) 295, 406, 461, 684
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 8 cut(s) 266, 269, 481, 522, 559, 571, 614, 707
Mph1103I ATGCAT 1 cut(s) 498
MseI TTAA 4 cut(s) 57, 294, 471, 687
MslI CAYNNNNRTG 3 cut(s) 168, 433, 636
MspCI CTTAAG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 135, 204
MvaI CCWGG 2 cut(s) 135, 204
MwoI GCNNNNNNNGC 2 cut(s) 297, 668
NdeII GATC 4 cut(s) 320, 382, 412, 549
NlaIII CATG 4 cut(s) 434, 496, 500, 518
NlaIV GGNNCC 2 cut(s) 551, 715
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 496
OliI CACNNNNGTG 2 cut(s) 168, 433
PfeI GAWTC 3 cut(s) 231, 508, 526
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 2 cut(s) 53, 649
PshBI ATTAAT 1 cut(s) 294
Psp1406I AACGTT 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 133, 202
PspGI CCWGG 2 cut(s) 133, 202
PspN4I GGNNCC 2 cut(s) 551, 715
PspPI GGNCC 1 cut(s) 713
PsuI RGATCY 1 cut(s) 549
RsaI GTAC 3 cut(s) 84, 158, 485
RsaNI GTAC 3 cut(s) 83, 157, 484
RseI CAYNNNNRTG 3 cut(s) 168, 433, 636
SaqAI TTAA 4 cut(s) 57, 294, 471, 687
SatI GCNGC 2 cut(s) 52, 648
Sau3AI GATC 4 cut(s) 320, 382, 412, 549
Sau96I GGNCC 1 cut(s) 713
ScrFI CCNGG 2 cut(s) 135, 204
SetI ASST 9 cut(s) 20, 70, 208, 239, 340, 376, 420, 459, 482
SfaNI GCATC 3 cut(s) 208, 634, 659
SfcI CTRYAG 1 cut(s) 189
SmiMI CAYNNNNRTG 3 cut(s) 168, 433, 636
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 4 cut(s) 295, 406, 461, 684
SsiI CCGC 2 cut(s) 272, 530
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 133, 202
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 2 cut(s) 70, 420
TaqI TCGA 1 cut(s) 370
TasI AATT 4 cut(s) 295, 406, 461, 684
TfiI GAWTC 3 cut(s) 231, 508, 526
Tru1I TTAA 4 cut(s) 57, 294, 471, 687
Tru9I TTAA 4 cut(s) 57, 294, 471, 687
TscAI CASTG 1 cut(s) 724
TseI GCWGC 2 cut(s) 51, 647
TspDTI ATGAA 5 cut(s) 27, 27, 83, 156, 456
TspGWI ACGGA 2 cut(s) 70, 542
TspRI CASTG 1 cut(s) 724
Vha464I CTTAAG 1 cut(s) 56
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 461
XceI RCATGY 1 cut(s) 496
XspI CTAG 1 cut(s) 654
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.