Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002847

Physical Location & Seq

Genomic Coordinates Reverse (-)

7675545 .. 7680185

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08780.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCATCGTTGTGCAGATCAGCTCTGATGGCCGGCTCCAGATCCATATCATCTCGCTCCAGAACCCTCACCCAGAGCTCCCTCAACGCCCTAAACCCCAAACCCATGTCCTCTCCCTTTGCTTCCTCCACCAAACCCATGTCTAGCGCCACAAGGTTCGTTTCGGTGTTGGGAAGCTTGGAATCAATGATGCCACTCCACAGTGCGGTTGCTTCTGCTCGCCTCAAGTCCAACATTGCCTTCGATTCCACCTGCTGGAGTTGCCTTTCTCAGGATGTTGCAGTTCCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

10.24

Weight (kDa)

10.82

Isoelectric Point (pI)

83.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39300 AT4G39300
fragaria_vesca	FvH4_2g08780 FvH4_2g08780 FvH4_2g08780 FvH4_2g08780
malus_domestica	MD05G1030300.v1.1 MD10G1031700.v1.1 MD10G1076400.v1.1
prunus_persica	Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1
pyrus_communis	pycom05g02150 pycom10g05980
rosa_chinensis	RchiOBHm_Chr5g0010131 RchiOBHm_Chr6g0264231
rosa_multiflora	Rmu_co8277883.1_g000001 Rmu_sc0000818.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431630 Rroxscaffold_1G00066060 Rroxscaffold_7G00203380
rosa_rugosa	Rorug06G0011100 Rorug06G0011100 Rorug06G0011200 Rorug06G0011300
rosa_samantha	Rh5AG080100 Rh5CG088200 Rh5DG075500 Rh6AG130400 Rh6BG127700 Rh6DG113000
rosa_wichuraiana	Rw5G007410 Rw6G011360 Rw6G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	255
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	205, 255, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	3 cut(s)	23, 78, 177
AluI	AGCT	3 cut(s)	23, 78, 177
Alw21I	GWGCWC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	2 cut(s)	14, 180
BpmI	CTGGAG	3 cut(s)	22, 43, 277
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 255, 271
Bse118I	RCCGGY	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	205, 255, 271
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	205, 255, 271
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	17, 41
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	17, 41
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	34, 220
BstDEI	CTNAG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	20, 44
BstMBI	GATC	2 cut(s)	17, 41
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 261
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	34, 220
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	32
CviAII	CATG	2 cut(s)	106, 139
CviJI	RGCY	5 cut(s)	23, 32, 36, 78, 177
CviKI_1	RGCY	5 cut(s)	23, 32, 36, 78, 177
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	19, 43
DpnII	GATC	2 cut(s)	17, 41
EaeI	YGGCCR	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	2 cut(s)	109, 142
FaiI	YATR	3 cut(s)	47, 107, 140
FatI	CATG	2 cut(s)	105, 138
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	148
GsuI	CTGGAG	3 cut(s)	22, 43, 277
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	109, 142
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	2 cut(s)	182, 245
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	39, 60, 272
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	15, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 261
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	109, 142
HspAI	GCGC	1 cut(s)	147
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	17, 41
LmnI	GCTCC	3 cut(s)	41, 62, 83
LpnPI	CCDG	7 cut(s)	46, 52, 73, 86, 241, 257, 265
LweI	GCATC	2 cut(s)	14, 180
MaeI	CTAG	1 cut(s)	144
MalI	GATC	2 cut(s)	19, 43
MboI	GATC	2 cut(s)	17, 41
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	77, 92, 121, 136, 233
MroNI	GCCGGC	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	10
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	29, 261
NaeI	GCCGGC	1 cut(s)	34
NdeII	GATC	2 cut(s)	17, 41
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	109, 142
NlaIV	GGNNCC	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	182, 245
PflMI	CCANNNNNTGG	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	17, 41
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	5 cut(s)	25, 80, 158, 179, 254
SfaNI	GCATC	2 cut(s)	14, 180
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	182, 245
TscAI	CASTG	1 cut(s)	208
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.