pycom05g02150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002847
Physical Location & Seq
Reverse (-)
2463687 .. 2464070
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02150.1

Sequence Viewer

Length: 279 bp
ATGGCAGGCTCAAGGTCCATAGCTCGCTCAAGAGCCCTCACCCAAACCTCCCTTAACTCCCTAAACCACGCAGCCATGGCGTCCACGTTTGCTTCCGCCACCAGAACAGTTCCTTGCGCTACAAGATTCGTTTCCGTATTGGGATTCATGGAGTCAATGATGCTGCTTCACAGCGCCAGTGCTTCTGCTCGGCTTACTTCCAACATTGTTGTCGATTCCACCTGCTGGAGCTCCCCTTCTCTTGGTAAACTTCTTACCCAATTTTTCTATTTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.86

Weight (kDa)

10.12

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 230
Acc36I ACCTGC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 225
AciI CCGC 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 225, 242
AluBI AGCT 2 cut(s) 23, 231
AluI AGCT 2 cut(s) 23, 231
Alw21I GWGCWC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 71, 163
AspLEI GCGC 2 cut(s) 119, 176
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 15
BanII GRGCYC 2 cut(s) 37, 233
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 83, 150
BfoI RGCGCY 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 230
BisI GCNGC 2 cut(s) 72, 164
BlsI GCNGC 2 cut(s) 73, 165
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmsI GCATC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 242
Bse1I ACTGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 225, 242
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 83, 150
BsiHKAI GWGCWC 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 225, 242
Bsp1286I GDGCHC 2 cut(s) 37, 233
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 7, 25
BstDSI CCRYGG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 2 cut(s) 119, 176
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 83, 150
BtgI CCRYGG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 184
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 7, 25
CfoI GCGC 2 cut(s) 119, 176
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 69
CviAII CATG 2 cut(s) 76, 148
CviJI RGCY 6 cut(s) 9, 23, 35, 74, 193, 231
CviKI_1 RGCY 6 cut(s) 9, 23, 35, 74, 193, 231
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 2 cut(s) 37, 233
Eco47I GGWCC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 37, 233
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 2 cut(s) 79, 151
FaiI YATR 3 cut(s) 20, 77, 149
FatI CATG 2 cut(s) 75, 147
Fnu4HI GCNGC 2 cut(s) 72, 164
FriOI GRGCYC 2 cut(s) 37, 233
Fsp4HI GCNGC 2 cut(s) 72, 164
GlaI GCGC 2 cut(s) 118, 175
GluI GCNGC 2 cut(s) 72, 164
GsuI CTGGAG 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 177
HgaI GACGC 1 cut(s) 69
HhaI GCGC 2 cut(s) 119, 176
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 79, 151
Hin6I GCGC 2 cut(s) 117, 174
HinP1I GCGC 2 cut(s) 117, 174
HinfI GANTC 4 cut(s) 126, 144, 152, 215
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 84, 248
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 2 cut(s) 84, 248
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 79, 151
HspAI GCGC 2 cut(s) 117, 174
LmnI GCTCC 2 cut(s) 228, 236
LpnPI CCDG 4 cut(s) 115, 190, 211, 235
Lsp1109I GCAGC 2 cut(s) 83, 150
LweI GCATC 1 cut(s) 150
MaeII ACGT 1 cut(s) 86
MhlI GDGCHC 2 cut(s) 37, 233
MluCI AATT 1 cut(s) 260
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 2 cut(s) 47, 58
MseI TTAA 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 75
NlaIII CATG 2 cut(s) 79, 151
NmeAIII GCCGAG 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 230
PfeI GAWTC 3 cut(s) 126, 144, 215
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 2 cut(s) 73, 165
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 15
SacI GAGCTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 72, 164
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 2 cut(s) 37, 233
SetI ASST 6 cut(s) 17, 25, 50, 89, 224, 233
SfaNI GCATC 1 cut(s) 150
SinI GGWCC 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 10, 28
SmoI CTYRAG 2 cut(s) 10, 28
Sse9I AATT 1 cut(s) 260
SsiI CCGC 1 cut(s) 96
SstI GAGCTC 1 cut(s) 233
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 260
TfiI GAWTC 3 cut(s) 126, 144, 215
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 184
TseI GCWGC 2 cut(s) 71, 163
TspDTI ATGAA 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.