RchiOBHm_Chr6g0264231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002847
Physical Location & Seq
Reverse (-)
19392823 .. 19396137
3315 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23697

Sequence Viewer

Length: 294 bp
ATGGCTTCGTTGTGCAGATCAGCTCTCATGGCTGGCTCAAGATCCATATCATCTCGCTCCAGAACGCTCACCCAGAGCTCCCTCAACGCCTTAAACCCCAAACCCATGTCGTCTCCCTTTGCTTCCTCCACTAAAGCCATGCCTAGCGCTATAAGGTTCGTTTCGGTATTGGGTAGCTTGGAATCAATGATGCCGCTTCACAGTGCCATTGCTTCTGCTCGGCTCAAGTCCAACATTGCCTTCGATTCCACCTGCTGGAGTTGCCTTTCTCAGGACGTTGCAGTTCCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.25

Weight (kDa)

10.82

Isoelectric Point (pI)

85.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 260
AccB7I CCANNNNNTGG 1 cut(s) 255
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 36
AfeI AGCGCT 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 255, 271
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 3 cut(s) 23, 78, 177
AluI AGCT 3 cut(s) 23, 78, 177
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 36
Aor51HI AGCGCT 1 cut(s) 148
AspLEI GCGC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 61
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
BmsI GCATC 1 cut(s) 180
BpmI CTGGAG 2 cut(s) 43, 277
BpuEI CTTGAG 2 cut(s) 22, 209
BsaBI GATNNNNATC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 271
Bse3DI GCAATG 2 cut(s) 207, 234
Bse8I GATNNNNATC 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 287
BseJI GATNNNNATC 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 255, 271
BseMI GCAATG 2 cut(s) 207, 234
BseMII CTCAG 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 255, 271
BsmAI GTCTC 1 cut(s) 117
BsmBI CGTCTC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 17, 41
BspACI CCGC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 36
BsrDI GCAATG 2 cut(s) 207, 234
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 2 cut(s) 17, 41
Bst4CI ACNGT 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 269
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 20, 44
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 17, 41
BstMWI GCNNNNNNNGC 2 cut(s) 29, 261
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 208
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 149
CviAII CATG 3 cut(s) 28, 106, 139
CviJI RGCY 8 cut(s) 5, 23, 32, 36, 78, 137, 177, 223
CviKI_1 RGCY 8 cut(s) 5, 23, 32, 36, 78, 137, 177, 223
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 19, 43
DpnII GATC 2 cut(s) 17, 41
Ecl136II GAGCTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 80
Eco47III AGCGCT 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 78
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 3 cut(s) 31, 109, 142
FaiI YATR 5 cut(s) 29, 47, 107, 140, 152
FatI CATG 3 cut(s) 27, 105, 138
Fnu4HI GCNGC 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 194
GsuI CTGGAG 2 cut(s) 43, 277
HaeII RGCGCY 1 cut(s) 150
HhaI GCGC 1 cut(s) 149
Hin1II CATG 3 cut(s) 31, 109, 142
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 2 cut(s) 182, 245
HphI GGTGA 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 39, 60, 272
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 15, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 261
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 3 cut(s) 31, 109, 142
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 17, 41
LmnI GCTCC 2 cut(s) 62, 83
LpnPI CCDG 6 cut(s) 18, 73, 86, 241, 257, 265
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 276
MalI GATC 2 cut(s) 19, 43
MboI GATC 2 cut(s) 17, 41
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 2 cut(s) 92, 136
MseI TTAA 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 29, 261
NdeII GATC 2 cut(s) 17, 41
NlaIII CATG 3 cut(s) 31, 109, 142
NmeAIII GCCGAG 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 182, 245
PflMI CCANNNNNTGG 1 cut(s) 255
PkrI GCNGC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 41
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 2 cut(s) 17, 41
SduI GDGCHC 1 cut(s) 80
SetI ASST 6 cut(s) 25, 80, 158, 179, 254, 279
SfaNI GCATC 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 37, 224
SmoI CTYRAG 2 cut(s) 37, 224
SsiI CCGC 1 cut(s) 194
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 80
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 243
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 2 cut(s) 182, 245
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 208
TspRI CASTG 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 255
XagI CCTNNNNNAGG 1 cut(s) 269
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.