Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0002847

Physical Location & Seq

Genomic Coordinates Reverse (-)

1477839 .. 1478270

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTTCGTTGTGCAGATCAGCTCTCATGGCTGGATCAAGATCCATATCATCTCGCTCCAGAACGCTCACCCAGAGCTCCCTCAACGCCTTAAACCCCAAACCCATGTCGTCTCCCTTTGCTTCCTCCACCAAAGCCATGCCTAGCGCTATAAGGTTCGTTTCGGTATTGGGTAGCTTGGAATCAATGATGCCGCTTCACAGTGCCATTGCTTCTGCTCGACTCAAGTCCAACATTGCCTTCGATTCCACCTGCTGGAGTTGCCTTTCTCAGGGTAACCCACTTAACTTAACATCCTTATCTGTTTTCGATTGGTGTTTGTGTCTTTCAAGTGTTCTGGTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.23

Weight (kDa)

9.64

Isoelectric Point (pI)

76.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39300 AT4G39300
fragaria_vesca	FvH4_2g08780 FvH4_2g08780 FvH4_2g08780 FvH4_2g08780
malus_domestica	MD05G1030300.v1.1 MD10G1031700.v1.1 MD10G1076400.v1.1
prunus_persica	Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1
pyrus_communis	pycom05g02150 pycom10g05980
rosa_chinensis	RchiOBHm_Chr5g0010131 RchiOBHm_Chr6g0264231
rosa_multiflora	Rmu_co8277883.1_g000001 Rmu_sc0000818.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431630 Rroxscaffold_1G00066060 Rroxscaffold_7G00203380
rosa_rugosa	Rorug06G0011100 Rorug06G0011100 Rorug06G0011200 Rorug06G0011300
rosa_samantha	Rh5AG080100 Rh5CG088200 Rh5DG075500 Rh6AG130400 Rh6BG127700 Rh6DG113000
rosa_wichuraiana	Rw5G007410 Rw6G011360 Rw6G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	255
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	36, 43
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	255, 271
AgsI	TTSAA	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	3 cut(s)	23, 78, 177
AluI	AGCT	3 cut(s)	23, 78, 177
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	36, 43
Aor51HI	AGCGCT	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	180
BoxI	GACNNNNGTC	1 cut(s)	226
BpmI	CTGGAG	2 cut(s)	43, 277
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	2 cut(s)	40, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 271
Bse3DI	GCAATG	2 cut(s)	207, 234
Bse8I	GATNNNNATC	2 cut(s)	40, 46
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	2 cut(s)	40, 46
BseLI	CCNNNNNNNGG	2 cut(s)	255, 271
BseMI	GCAATG	2 cut(s)	207, 234
BseMII	CTCAG	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	255, 271
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	17, 35, 41
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	2 cut(s)	36, 43
BsrDI	GCAATG	2 cut(s)	207, 234
BssMI	GATC	3 cut(s)	17, 35, 41
Bst4CI	ACNGT	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	275
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	20, 38, 44
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	3 cut(s)	17, 35, 41
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 261
BstPAI	GACNNNNGTC	1 cut(s)	226
BstPI	GGTNACC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	149
CviAII	CATG	3 cut(s)	28, 106, 139
CviJI	RGCY	6 cut(s)	5, 23, 32, 78, 137, 177
CviKI_1	RGCY	6 cut(s)	5, 23, 32, 78, 137, 177
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	19, 37, 43
DpnII	GATC	3 cut(s)	17, 35, 41
Ecl136II	GAGCTC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	80
Eco47III	AGCGCT	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	80
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	3 cut(s)	31, 109, 142
FaiI	YATR	5 cut(s)	29, 47, 107, 140, 152
FatI	CATG	3 cut(s)	27, 105, 138
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	194
GsuI	CTGGAG	2 cut(s)	43, 277
HaeII	RGCGCY	1 cut(s)	150
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	31, 109, 142
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	3 cut(s)	182, 222, 245
HphI	GGTGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	39, 60
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 261
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	31, 109, 142
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	17, 35, 41
LmnI	GCTCC	2 cut(s)	62, 83
LpnPI	CCDG	7 cut(s)	18, 73, 86, 241, 257, 265, 323
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	3 cut(s)	19, 37, 43
MboI	GATC	3 cut(s)	17, 35, 41
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	92, 136
MseI	TTAA	3 cut(s)	92, 285, 290
MwoI	GCNNNNNNNGC	2 cut(s)	29, 261
NdeII	GATC	3 cut(s)	17, 35, 41
NlaIII	CATG	3 cut(s)	31, 109, 142
PaqCI	CACCTGC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	182, 245
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PshAI	GACNNNNGTC	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	80
PspEI	GGTNACC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	92, 285, 290
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	3 cut(s)	17, 35, 41
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	5 cut(s)	25, 80, 158, 179, 254
SfaNI	GCATC	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	3 cut(s)	220, 243, 309
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	182, 245
Tru1I	TTAA	3 cut(s)	92, 285, 290
Tru9I	TTAA	3 cut(s)	92, 285, 290
TscAI	CASTG	1 cut(s)	208
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.