Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002847

Physical Location & Seq

Genomic Coordinates Forward (+)

12912007 .. 12915520

Gene Structure 3514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G097200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTTCCTTCTGCAGATCAGCTCTAATGGCCGGCTCGAGATCCATAGCTCGCTCAAGAACCCTCAGCCAGAGCTCCCTAAACTCCCTAAACCCTGCAGCCATGTCGTCTCCATTTGCTTCGGCCACCAGAACCATCCCTTGCGCTACAAGGTTTGTTTCGGTATTGGGAAGCATGGAGTCAATGATGCCACTTCACAGTGCCATTGCTTCTGCTCGGCTCAAATCCAACATTGCCGTCGATTCCACCTGCTGGAGCTGCCTTTCTCAAGGTCTTGCATCACCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.0

Weight (kDa)

10.63

Isoelectric Point (pI)

77.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39300 AT4G39300
fragaria_vesca	FvH4_2g08780 FvH4_2g08780 FvH4_2g08780 FvH4_2g08780
malus_domestica	MD05G1030300.v1.1 MD10G1031700.v1.1 MD10G1076400.v1.1
prunus_persica	Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1 Prupe.8G097200_v2.0.a1
pyrus_communis	pycom05g02150 pycom10g05980
rosa_chinensis	RchiOBHm_Chr5g0010131 RchiOBHm_Chr6g0264231
rosa_multiflora	Rmu_co8277883.1_g000001 Rmu_sc0000818.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431630 Rroxscaffold_1G00066060 Rroxscaffold_7G00203380
rosa_rugosa	Rorug06G0011100 Rorug06G0011100 Rorug06G0011200 Rorug06G0011300
rosa_samantha	Rh5AG080100 Rh5CG088200 Rh5DG075500 Rh6AG130400 Rh6BG127700 Rh6DG113000
rosa_wichuraiana	Rw5G007410 Rw6G011360 Rw6G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	252
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	2 cut(s)	30, 123
AfiI	CCNNNNNNNGG	1 cut(s)	252
AleI	CACNNNNGTG	1 cut(s)	286
AluBI	AGCT	4 cut(s)	23, 50, 75, 258
AluI	AGCT	4 cut(s)	23, 50, 75, 258
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	36
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	30, 123
ApeKI	GCWGC	2 cut(s)	98, 258
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	110, 245
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	13, 96
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	99, 259
BlsI	GCNGC	2 cut(s)	100, 260
BmeT110I	CYCGRG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	177, 287
BpmI	CTGGAG	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	40, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	32
Bse3DI	GCAATG	2 cut(s)	204, 231
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	2 cut(s)	204, 231
BseMII	CTCAG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	110, 245
BshFI	GGCC	2 cut(s)	32, 125
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	32, 125
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	17, 41
BspANI	GGCC	2 cut(s)	32, 125
BspCNI	CTCAG	1 cut(s)	78
BspMAI	CTGCAG	2 cut(s)	17, 100
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	204, 231
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	2 cut(s)	17, 41
Bst4CI	ACNGT	2 cut(s)	200, 285
BstC8I	GCNNGC	2 cut(s)	34, 52
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	20, 44
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	17, 41
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 258
BstSFI	CTRYAG	2 cut(s)	13, 96
BstV1I	GCAGC	2 cut(s)	110, 245
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	32, 125
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	34, 52
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	32
CviAII	CATG	2 cut(s)	103, 175
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	19, 43
DpnII	GATC	2 cut(s)	17, 41
EaeI	YGGCCR	2 cut(s)	30, 123
Ecl136II	GAGCTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	2 cut(s)	106, 178
FaiI	YATR	3 cut(s)	47, 104, 176
FatI	CATG	2 cut(s)	102, 174
Fnu4HI	GCNGC	2 cut(s)	99, 259
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	99, 259
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	99, 259
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	32, 125
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	106, 178
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	179, 242
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	273
Hpy188III	TCNNGA	2 cut(s)	39, 57
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	200, 285
HpyCH4V	TGCA	3 cut(s)	15, 98, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 258
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	106, 178
HspAI	GCGC	1 cut(s)	144
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	17, 41
LmnI	GCTCC	2 cut(s)	80, 255
LpnPI	CCDG	6 cut(s)	46, 83, 108, 142, 238, 262
Lsp1109I	GCAGC	2 cut(s)	110, 245
LweI	GCATC	2 cut(s)	177, 287
MalI	GATC	2 cut(s)	19, 43
MboI	GATC	2 cut(s)	17, 41
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	1 cut(s)	74
MroNI	GCCGGC	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	286
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	29, 258
NaeI	GCCGGC	1 cut(s)	34
NdeII	GATC	2 cut(s)	17, 41
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	106, 178
NmeAIII	GCCGAG	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	257
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	100, 260
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	77
PstI	CTGCAG	2 cut(s)	17, 100
PsuI	RGATCY	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	99, 259
Sau3AI	GATC	2 cut(s)	17, 41
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	7 cut(s)	25, 52, 77, 155, 251, 260, 274
SfaNI	GCATC	2 cut(s)	177, 287
SfcI	CTRYAG	2 cut(s)	13, 96
Sfr274I	CTCGAG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	286
SmlI	CTYRAG	3 cut(s)	37, 55, 267
SmoI	CTYRAG	3 cut(s)	37, 55, 267
SstI	GAGCTC	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	200, 285
TaqI	TCGA	2 cut(s)	38, 240
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	2 cut(s)	98, 258
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.