Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Reverse (-)

18397591 .. 18399387

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCGAAGCGAAAAGCAAAGGAGTGTGTCAAACTCACTGAAGAAGATAGGAACGACGAGAAACGAATTCGAATCGAAGAGAAGAAAGAAGACTTCGTCGACGAAGAAGTCGAAAGACAAATTGCTGCGATTAGAGCAATCCGTGATGTTGAGATTGAACAAATGTTAACTGCATTGCGGTTGCTTCGTTCGTATTTTACTGAGGAACAGCTACACACTCCTGTGTTAGACTTCTTTAAAGAGAATCTTCCGGATTTATCGATATCGAGAAACGAAGAAACTGGGGAGATTGAGTTAAAGTGGAGAGACGAAAATGGTGATTCGTTTGCTGGAAATGAGAATGGCGTTGACATGAATTATTCTATTTTGAAACGCTTGTCGATGCGTTTTACCGATTTATACAGTAGGTCATCTCTTGGTGGCTATGATTTACCTGACAACGTGAAAGCTAACCTGTTAGGAACTGATAACCCACAGCTCGATAATCTTGTCTTTCAGGGGACATCTGAGAACCAAATGCTTCCAGGCCATGATGCTTTTCAGACTCCTGGGGTTAATGGGCAAAGACTTTCTTTTGGAATGACTCCAAAGACTCTGAGGCTACCAAAAGCTGGAGAGATGATGCTCTCTGTGCATGGCTCTCCTTTGGGGGTCTACAAAGAAGACCACAACATGGGAGCAATAAATGAGGAAAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.61

Weight (kDa)

4.88

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccB7I	CCANNNNNTGG	2 cut(s)	611, 673
AccI	GTMKAC	2 cut(s)	99, 654
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	611, 673
AgsI	TTSAA	2 cut(s)	158, 370
AjnI	CCWGG	2 cut(s)	523, 547
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	4 cut(s)	211, 449, 478, 611
AluI	AGCT	4 cut(s)	211, 449, 478, 611
Alw26I	GTCTC	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	70
BbsI	GAAGAC	2 cut(s)	96, 669
BbvI	GCAGC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	525, 549
BcoDI	GTCTC	1 cut(s)	300
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	525, 549
BmrFI	CCNGG	2 cut(s)	525, 549
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	372, 523, 612
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	96, 669
BpmI	CTGGAG	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	611, 673
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	173
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	2 cut(s)	525, 549
BseCI	ATCGAT	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	548
BseLI	CCNNNNNNNGG	2 cut(s)	611, 673
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	3 cut(s)	192, 498, 587
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	2 cut(s)	611, 673
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	528
Bsp119I	TTCGAA	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	250
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	3 cut(s)	193, 499, 588
BspDI	ATCGAT	1 cut(s)	260
BspEI	TCCGGA	1 cut(s)	250
BspT104I	TTCGAA	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	548
Bst2UI	CCWGG	2 cut(s)	525, 549
Bst4CI	ACNGT	2 cut(s)	404, 698
Bst6I	CTCTTC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	201, 507, 596
BstMAI	GTCTC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 631
BstNI	CCWGG	2 cut(s)	525, 549
BstSCI	CCNGG	2 cut(s)	523, 547
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	2 cut(s)	96, 669
Bsu15I	ATCGAT	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	528
BsuTUI	ATCGAT	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	260
CviAII	CATG	4 cut(s)	352, 530, 635, 673
CviJI	RGCY	8 cut(s)	211, 423, 449, 478, 528, 601, 611, 639
CviKI_1	RGCY	8 cut(s)	211, 423, 449, 478, 528, 601, 611, 639
DdeI	CTNAG	3 cut(s)	201, 507, 596
DraI	TTTAAA	1 cut(s)	238
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	523, 547
EcoRV	GATATC	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	4 cut(s)	355, 533, 638, 676
FaiI	YATR	6 cut(s)	353, 400, 426, 531, 636, 674
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 556, 588
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	4 cut(s)	351, 529, 634, 672
FblI	GTMKAC	2 cut(s)	99, 654
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	4 cut(s)	355, 533, 638, 676
HincII	GTYRAC	3 cut(s)	100, 168, 349
HindII	GTYRAC	3 cut(s)	100, 168, 349
HinfI	GANTC	6 cut(s)	72, 244, 320, 544, 583, 592
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	4 cut(s)	100, 168, 349, 655
Hpy188I	TCNGA	3 cut(s)	508, 543, 597
Hpy188III	TCNNGA	2 cut(s)	251, 267
Hpy8I	GTNNAC	4 cut(s)	100, 168, 349, 655
Hpy99I	CGWCG	3 cut(s)	59, 101, 104
HpyCH4III	ACNGT	2 cut(s)	404, 698
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	2 cut(s)	173, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 631
HpyF3I	CTNAG	3 cut(s)	201, 507, 596
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	4 cut(s)	355, 533, 638, 676
Kpn2I	TCCGGA	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	677
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	3 cut(s)	372, 523, 612
MaeII	ACGT	1 cut(s)	441
MboII	GAAGA	9 cut(s)	53, 56, 89, 94, 101, 116, 239, 287, 674
MluCI	AATT	3 cut(s)	66, 120, 355
MlyI	GAGTC	3 cut(s)	538, 577, 586
MnlI	CCTC	3 cut(s)	196, 591, 682
MroI	TCCGGA	1 cut(s)	250
MseI	TTAA	4 cut(s)	167, 237, 296, 555
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	525, 549
MvaI	CCWGG	2 cut(s)	525, 549
MwoI	GCNNNNNNNGC	2 cut(s)	134, 631
NlaIII	CATG	4 cut(s)	355, 533, 638, 676
NspV	TTCGAA	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	72, 244, 320
PflFI	GACNNNGTC	1 cut(s)	95
PflMI	CCANNNNNTGG	2 cut(s)	611, 673
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	3 cut(s)	538, 577, 586
PpsI	GAGTC	3 cut(s)	538, 577, 586
Psp6I	CCWGG	2 cut(s)	523, 547
PspGI	CCWGG	2 cut(s)	523, 547
PsyI	GACNNNGTC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	221
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	4 cut(s)	167, 237, 296, 555
SatI	GCNGC	1 cut(s)	126
SchI	GAGTC	3 cut(s)	538, 577, 586
ScrFI	CCNGG	2 cut(s)	525, 549
SetI	ASST	8 cut(s)	213, 410, 436, 444, 451, 456, 480, 613
SfaNI	GCATC	3 cut(s)	372, 523, 612
SfuI	TTCGAA	1 cut(s)	70
SgrDI	CGTCGACG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	66, 120, 355
SsiI	CCGC	1 cut(s)	178
StyD4I	CCNGG	2 cut(s)	523, 547
TaaI	ACNGT	2 cut(s)	404, 698
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	8 cut(s)	70, 75, 99, 111, 260, 266, 380, 480
TasI	AATT	3 cut(s)	66, 120, 355
TfiI	GAWTC	3 cut(s)	72, 244, 320
Tru1I	TTAA	4 cut(s)	167, 237, 296, 555
Tru9I	TTAA	4 cut(s)	167, 237, 296, 555
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	95
Van91I	CCANNNNNTGG	2 cut(s)	611, 673
XapI	RAATTY	1 cut(s)	66
XmiI	GTMKAC	2 cut(s)	99, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.