Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Forward (+)

25692630 .. 25694295

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29070.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCTCCTATTGTTCGTTTCTTTTTTCGCAGTTGACCGACAAATATCAACCATTAGGGCTATGCGTGATGTGGAGATTGAACATCTGTTGACTAAATTGCGTTTGCTTCTCCAATGGCTTGAAAAAGACGGAAATGTGTCCATCAATGATGGAATAGATTTATATGGGACTCTTTCTCGTCGATTGTCCATGGCTTATTCTGGTTGCTCAGCTGCAATCCCGTCTTTAGGTGGCCTTGAGTTTTCTAGTAAAGCAGCGAGAACAAGCATTCTGGGAGCTGATAATCTTCAGACCAGGGACCTTGTTTCAGAGGAGCCATATAATTCTCTGATGCTAGGGAAGCAAGATACTCTCCAAACTCTTGGGGTTAGTAGCCAAAGGCTGTCCATTGGGATGACACCCAAAACGGTAAGGTTCCCAAAGCCTGGGGAGATGCTTGTATCTGTCCATGGCTCGCCTCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATACATGAGTTGGAAGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.86

Weight (kDa)

5.39

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	227, 425
AgsI	TTSAA	2 cut(s)	80, 122
AjnI	CCWGG	2 cut(s)	293, 424
AluBI	AGCT	2 cut(s)	212, 278
AluI	AGCT	2 cut(s)	212, 278
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	212, 254
AspS9I	GGNCC	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	199, 266
BccI	CCATC	2 cut(s)	143, 149
BciT130I	CCWGG	2 cut(s)	295, 426
BfaI	CTAG	2 cut(s)	246, 335
BisI	GCNGC	2 cut(s)	213, 255
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	2 cut(s)	214, 256
Bme1390I	CCNGG	2 cut(s)	295, 426
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	3 cut(s)	299, 315, 416
BmrFI	CCNGG	2 cut(s)	295, 426
BmsI	GCATC	2 cut(s)	321, 423
BpiI	GAAGAC	1 cut(s)	483
Bpu1102I	GCTNAGC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	257
BsaJI	CCNNGG	4 cut(s)	189, 294, 425, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 425
BseBI	CCWGG	2 cut(s)	295, 426
BseDI	CCNNGG	4 cut(s)	189, 294, 425, 448
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	227, 425
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	199, 266
BshFI	GGCC	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	181, 311
BslI	CCNNNNNNNGG	2 cut(s)	227, 425
BsmFI	GGGAC	2 cut(s)	181, 311
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	234
Bsp1720I	GCTNAGC	1 cut(s)	208
Bsp19I	CCATGG	2 cut(s)	189, 448
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	3 cut(s)	299, 315, 416
BssECI	CCNNGG	4 cut(s)	189, 294, 425, 448
BssT1I	CCWWGG	2 cut(s)	189, 448
Bst2UI	CCWGG	2 cut(s)	295, 426
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	2 cut(s)	189, 448
BstF5I	GGATG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	2 cut(s)	295, 426
BstSCI	CCNGG	2 cut(s)	293, 424
BstV1I	GCAGC	2 cut(s)	199, 266
BstV2I	GAAGAC	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	234
BtgI	CCRYGG	2 cut(s)	189, 448
BtsCI	GGATG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	298
CviAII	CATG	4 cut(s)	190, 449, 484, 497
DdeI	CTNAG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	189, 448
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	293, 424
EcoT14I	CCWWGG	2 cut(s)	189, 448
ErhI	CCWWGG	2 cut(s)	189, 448
FaeI	CATG	4 cut(s)	193, 452, 487, 500
FaiI	YATR	9 cut(s)	62, 163, 165, 191, 319, 321, 450, 485, 498
FaqI	GGGAC	2 cut(s)	181, 311
FatI	CATG	4 cut(s)	189, 448, 483, 496
Fnu4HI	GCNGC	2 cut(s)	213, 255
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	2 cut(s)	213, 255
FspBI	CTAG	2 cut(s)	246, 335
GluI	GCNGC	2 cut(s)	213, 255
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	193, 452, 487, 500
HincII	GTYRAC	2 cut(s)	34, 90
HindII	GTYRAC	2 cut(s)	34, 90
HinfI	GANTC	1 cut(s)	169
Hpy166II	GTNNAC	3 cut(s)	34, 90, 469
Hpy188I	TCNGA	3 cut(s)	291, 310, 330
Hpy8I	GTNNAC	3 cut(s)	34, 90, 469
Hpy99I	CGWCG	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	4 cut(s)	193, 452, 487, 500
LmnI	GCTCC	3 cut(s)	9, 275, 313
LpnPI	CCDG	6 cut(s)	186, 257, 280, 307, 411, 438
Lsp1109I	GCAGC	2 cut(s)	199, 266
LweI	GCATC	2 cut(s)	321, 423
MaeI	CTAG	2 cut(s)	246, 335
MboII	GAAGA	2 cut(s)	278, 488
MluCI	AATT	2 cut(s)	95, 322
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	3 cut(s)	304, 468, 502
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	295, 426
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	295, 426
MwoI	GCNNNNNNNGC	1 cut(s)	340
NcoI	CCATGG	2 cut(s)	189, 448
NlaIII	CATG	4 cut(s)	193, 452, 487, 500
NlaIV	GGNNCC	3 cut(s)	299, 315, 416
PctI	GAATGC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	214, 256
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	293, 424
PspGI	CCWGG	2 cut(s)	293, 424
PspN4I	GGNNCC	3 cut(s)	299, 315, 416
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	392
SatI	GCNGC	2 cut(s)	213, 255
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	295, 426
SetI	ASST	5 cut(s)	214, 232, 280, 303, 416
SfaNI	GCATC	2 cut(s)	321, 423
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	95, 322
SspMI	CTAG	2 cut(s)	246, 335
StyD4I	CCNGG	2 cut(s)	293, 424
StyI	CCWWGG	2 cut(s)	189, 448
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	95, 322
TseI	GCWGC	2 cut(s)	212, 254
TspGWI	ACGGA	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	298
XspI	CTAG	2 cut(s)	246, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.