Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Forward (+)

18931796 .. 18931981

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0202300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAGAATCTTGTACGTATTGCCGCTCAAATCTCTATTTCGATTCAGTTGTGTTTCAATACAGTGGCGTTCCATAAGATTGTCTGATTCAAAATTTGCCATATCCCATTTCAAAACAGCTTTAGTGCAGCAAACCCTTGGTTGTCGACTTGTCGTACACTACTCCTCTACGACAGAGTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

61

Amino Acids

7.06

Weight (kDa)

10.19

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	145
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	2 cut(s)	14, 156
AgsI	TTSAA	3 cut(s)	57, 90, 112
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	139
BisI	GCNGC	2 cut(s)	23, 128
BlsI	GCNGC	2 cut(s)	24, 129
BsaAI	YACGTR	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	16
BstSNI	TACGTA	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	13, 155
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
CviQI	GTAC	2 cut(s)	13, 155
Eco105I	TACGTA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaiI	YATR	2 cut(s)	74, 101
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	23, 128
Fsp4HI	GCNGC	2 cut(s)	23, 128
GluI	GCNGC	2 cut(s)	23, 128
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	3 cut(s)	6, 42, 86
Hpy166II	GTNNAC	2 cut(s)	146, 157
Hpy188I	TCNGA	1 cut(s)	85
Hpy8I	GTNNAC	2 cut(s)	146, 157
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	15
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	25
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	6, 42, 86
PkrI	GCNGC	2 cut(s)	24, 129
Ppu21I	YACGTR	1 cut(s)	16
RsaI	GTAC	2 cut(s)	14, 156
RsaNI	GTAC	2 cut(s)	13, 155
SalI	GTCGAC	1 cut(s)	144
SatI	GCNGC	2 cut(s)	23, 128
SetI	ASST	2 cut(s)	18, 121
SgeI	CNNG	3 cut(s)	22, 149, 161
SnaBI	TACGTA	1 cut(s)	16
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	40, 145
TasI	AATT	1 cut(s)	92
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	3 cut(s)	6, 42, 86
TscAI	CASTG	1 cut(s)	68
TseI	GCWGC	1 cut(s)	127
TspRI	CASTG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.