Prupe.6G176600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002677
Physical Location & Seq
Reverse (-)
18112499 .. 18119060
6562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G176600.12

Sequence Viewer

Length: 720 bp
ATGGCAAGAAAAAGAGCTAAGAAAACTGTAAAACAAGTTGCCTTGTCACCAGGGACCGATTTCAATGTTGCAGAGGAAAAGGAACCCCAGAATGCGAAACAAGAAGCTCAATTCACAGACCCAGATGTTGAGCGGCAAATTTCTGCCATTAGGGCTATTCGTGATGTTGAGACTGAACATCTCCTGACTAATTTGCGTTTGCTTCGCTCCTACTTCAACAAGGAACAGCAGCGAACCCCTGTATTGCAATATTTTAAAGAGAACTTTCAAAACCTGTCGATTGTAAGAAATGGAGAAAATGGACAAATGGAAGTGCAATGGATTGACAAAGATGGCAATGTATCCATGAATGATGGAATGGATTTACATGAGACTCTTCTTCGTCGGTTGTCCATTGCTTATTCTGGTTGCTCAGCTGCAATTCCATCTCTTGGTGGCTTTGAGTTTTCTAGTAAAGCAGATAAAACAAGCCTTCTGGGTGCTGATAATCTGCAGATCAGCGACTTTGGTTTAGAGGAGCCATTTGATACTCTGATGCTAGGGAAGCAAGATACTCTCCAAACTCCTGGGGTGAGTAGCCAGAGACTGTCTATTGGGATGACACCCAAGACGCGAAGGCTCCCGAAGCCTGGGGAGATGCTCTTATCTGTCCATGGCTCACCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCCATACATGAGTCGGAAGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.76

Weight (kDa)

5.38

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 133
AccII CGCG 1 cut(s) 613
AciI CCGC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 431, 629
AgsI TTSAA 3 cut(s) 64, 217, 269
AjnI CCWGG 3 cut(s) 49, 565, 628
AluBI AGCT 3 cut(s) 17, 107, 416
AluI AGCT 3 cut(s) 17, 107, 416
Alw26I GTCTC 3 cut(s) 164, 365, 577
AlwNI CAGNNNCTG 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 229, 416
ApoI RAATTY 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 3 cut(s) 39, 583, 651
AvaII GGWCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 687
BbvI GCAGC 2 cut(s) 241, 403
BccI CCATC 3 cut(s) 326, 347, 433
BciT130I CCWGG 3 cut(s) 51, 567, 630
BciVI GTATCC 1 cut(s) 352
BcoDI GTCTC 3 cut(s) 164, 365, 577
BfaI CTAG 2 cut(s) 450, 539
BfmI CTRYAG 1 cut(s) 491
BfuI GTATCC 1 cut(s) 352
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 3 cut(s) 134, 230, 417
BlpI GCTNAGC 1 cut(s) 412
BlsI GCNGC 3 cut(s) 135, 231, 418
Bme1390I CCNGG 3 cut(s) 51, 567, 630
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 4 cut(s) 55, 84, 519, 620
BmrFI CCNGG 3 cut(s) 51, 567, 630
BmsI GCATC 2 cut(s) 525, 627
BpiI GAAGAC 1 cut(s) 687
Bpu1102I GCTNAGC 1 cut(s) 412
BsaJI CCNNGG 5 cut(s) 50, 566, 629, 652, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 629
Bse3DI GCAATG 3 cut(s) 323, 343, 393
BseBI CCWGG 3 cut(s) 51, 567, 630
BseDI CCNNGG 5 cut(s) 50, 566, 629, 652, 664
BseGI GGATG 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 431, 629
BseMI GCAATG 3 cut(s) 323, 343, 393
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 2 cut(s) 241, 403
Bsh1236I CGCG 1 cut(s) 613
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 431, 629
BsmAI GTCTC 3 cut(s) 164, 365, 577
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 495
Bsp1720I GCTNAGC 1 cut(s) 412
Bsp19I CCATGG 1 cut(s) 652
BspACI CCGC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 425
BspFNI CGCG 1 cut(s) 613
BspLI GGNNCC 4 cut(s) 55, 84, 519, 620
BspMAI CTGCAG 1 cut(s) 495
BsrBI CCGCTC 1 cut(s) 133
BsrDI GCAATG 3 cut(s) 323, 343, 393
BssECI CCNNGG 5 cut(s) 50, 566, 629, 652, 664
BssMI GATC 1 cut(s) 495
BssT1I CCWWGG 2 cut(s) 652, 664
Bst2UI CCWGG 3 cut(s) 51, 567, 630
Bst4CI ACNGT 2 cut(s) 28, 588
Bst6I CTCTTC 2 cut(s) 381, 705
BstDEI CTNAG 2 cut(s) 18, 412
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 1 cut(s) 603
BstFNI CGCG 1 cut(s) 613
BstKTI GATC 1 cut(s) 498
BstMAI GTCTC 3 cut(s) 164, 365, 577
BstMBI GATC 1 cut(s) 495
BstMWI GCNNNNNNNGC 3 cut(s) 152, 544, 625
BstNI CCWGG 3 cut(s) 51, 567, 630
BstSCI CCNGG 3 cut(s) 49, 565, 628
BstSFI CTRYAG 1 cut(s) 491
BstUI CGCG 1 cut(s) 613
BstV1I GCAGC 2 cut(s) 241, 403
BstV2I GAAGAC 1 cut(s) 687
BstXI CCANNNNNNTGG 1 cut(s) 566
BsuI GTATCC 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 652
BtsCI GGATG 1 cut(s) 603
CaiI CAGNNNCTG 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 619
CviAII CATG 5 cut(s) 346, 368, 653, 688, 701
DdeI CTNAG 2 cut(s) 18, 412
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 381, 705
EarI CTCTTC 2 cut(s) 381, 705
Eco130I CCWWGG 2 cut(s) 652, 664
Eco47I GGWCC 1 cut(s) 54
EcoRII CCWGG 3 cut(s) 49, 565, 628
EcoT14I CCWWGG 2 cut(s) 652, 664
ErhI CCWWGG 2 cut(s) 652, 664
FaeI CATG 5 cut(s) 349, 371, 656, 691, 704
FaiI YATR 6 cut(s) 347, 369, 654, 689, 698, 702
FaqI GGGAC 1 cut(s) 67
FatI CATG 5 cut(s) 345, 367, 652, 687, 700
Fnu4HI GCNGC 3 cut(s) 134, 230, 417
FokI GGATG 1 cut(s) 610
Fsp4HI GCNGC 3 cut(s) 134, 230, 417
FspBI CTAG 2 cut(s) 450, 539
GluI GCNGC 3 cut(s) 134, 230, 417
HgaI GACGC 1 cut(s) 619
Hin1II CATG 5 cut(s) 349, 371, 656, 691, 704
HinfI GANTC 2 cut(s) 373, 704
HphI GGTGA 3 cut(s) 39, 583, 651
Hpy166II GTNNAC 1 cut(s) 673
Hpy188I TCNGA 2 cut(s) 534, 709
Hpy188III TCNNGA 3 cut(s) 161, 184, 622
Hpy8I GTNNAC 1 cut(s) 673
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 482, 609
HpyCH4III ACNGT 2 cut(s) 28, 588
HpyCH4V TGCA 5 cut(s) 71, 247, 316, 419, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 544, 625
HpyF3I CTNAG 2 cut(s) 18, 412
Hsp92II CATG 5 cut(s) 349, 371, 656, 691, 704
Kzo9I GATC 1 cut(s) 495
LmnI GCTCC 3 cut(s) 212, 517, 624
Lsp1109I GCAGC 2 cut(s) 241, 403
LweI GCATC 2 cut(s) 525, 627
MaeI CTAG 2 cut(s) 450, 539
MaeIII GTNAC 1 cut(s) 45
MalI GATC 1 cut(s) 497
MbiI CCGCTC 1 cut(s) 133
MboI GATC 1 cut(s) 495
MboII GAAGA 3 cut(s) 368, 371, 692
MluCI AATT 4 cut(s) 110, 138, 190, 420
MlyI GAGTC 2 cut(s) 367, 713
MmeI TCCRAC 1 cut(s) 687
MnlI CCTC 3 cut(s) 67, 508, 706
MseI TTAA 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 3 cut(s) 51, 567, 630
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 3 cut(s) 51, 567, 630
MvnI CGCG 1 cut(s) 613
MwoI GCNNNNNNNGC 3 cut(s) 152, 544, 625
NcoI CCATGG 1 cut(s) 652
NdeII GATC 1 cut(s) 495
NlaIII CATG 5 cut(s) 349, 371, 656, 691, 704
NlaIV GGNNCC 4 cut(s) 55, 84, 519, 620
NmuCI GTSAC 1 cut(s) 45
PctI GAATGC 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 3 cut(s) 135, 231, 418
PleI GAGTC 2 cut(s) 367, 712
PpsI GAGTC 2 cut(s) 367, 712
Psp6I CCWGG 3 cut(s) 49, 565, 628
PspGI CCWGG 3 cut(s) 49, 565, 628
PspN4I GGNNCC 4 cut(s) 55, 84, 519, 620
PspPI GGNCC 1 cut(s) 54
PstI CTGCAG 1 cut(s) 495
PstNI CAGNNNCTG 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 416
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 134, 230, 417
Sau3AI GATC 1 cut(s) 495
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 2 cut(s) 367, 713
ScrFI CCNGG 3 cut(s) 51, 567, 630
SetI ASST 4 cut(s) 19, 109, 276, 418
SfaNI GCATC 2 cut(s) 525, 627
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 54
Sse9I AATT 4 cut(s) 110, 138, 190, 420
SsiI CCGC 1 cut(s) 133
SspI AATATT 1 cut(s) 251
SspMI CTAG 2 cut(s) 450, 539
StyD4I CCNGG 3 cut(s) 49, 565, 628
StyI CCWWGG 2 cut(s) 652, 664
TaaI ACNGT 2 cut(s) 28, 588
TaqI TCGA 1 cut(s) 278
TaqII GACCGA 1 cut(s) 71
TasI AATT 4 cut(s) 110, 138, 190, 420
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 2 cut(s) 229, 416
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 138
XspI CTAG 2 cut(s) 450, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.