Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Reverse (-)

37277703 .. 37280212

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1334800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCAAGGAAAAGAGGTAGAAAACCTGTAAAGCAAGTTGCCTCGTCACCGGGGAACGATTTCAACCTTGCTGATGAAAAGGAGCCCCAGATTGAGAAGCAAGAAGCTCAATTCACAGACCTAGATGTTGACCGACAAATATCAGCCATTAGGGCTATGCGTGATGTGGAGATAGAACATCTGTTGACTAAATTGCGTTTGCTTCGCTCCTATTTCACCAAGGAACAGCTGCAAACCCCTTTATTGCAATTTTTTAAACACAACTATCAAAACCTGTCTATTGTAACATCTGGAGAAAATGGAATGATGGAAGTCCAATGGCTTGAAAAAGACGGAAATGTGTCCATGAATGATGGAATAGATTTATATGAGACTCTTTTTCGTCGGTTGTCCATGGCTTATTCTGGTTGCTCAGCTGCAATCCCGTCTTTAGGTGGCTTTGAGTTTTCTAGTAATGCAGCGAGAACAAGCATTCTGGGAGCTGATAATCTTCAGACCAGGGACTTTGTTTCAGAGGAGCCATATAATTCTCTGATGCTAGGGAAGCAAGATACTCTCCAAACTCCTGGGGTTAGTAGCCAAAGGCTGTCCATTGGGATGACACCCAAAACGGTAAGGTTCCCAAAGCCTGGGGAGATGCTCGTATCTGTCCATGGCTCACCTCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATACATGAGTCGGAAGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.83

Weight (kDa)

5.36

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	629
AcuI	CTGAAG	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	431, 629
AgsI	TTSAA	2 cut(s)	64, 326
AjnI	CCWGG	3 cut(s)	497, 565, 628
AluBI	AGCT	4 cut(s)	107, 229, 416, 482
AluI	AGCT	4 cut(s)	107, 229, 416, 482
Alw26I	GTCTC	1 cut(s)	365
ApeKI	GCWGC	3 cut(s)	229, 416, 458
Asp700I	GAANNNNTTC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	39, 208, 651
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	216, 403, 470
BccI	CCATC	2 cut(s)	301, 347
BciT130I	CCWGG	3 cut(s)	499, 567, 630
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	3 cut(s)	122, 450, 539
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	230, 417, 459
BlpI	GCTNAGC	1 cut(s)	412
BlsI	GCNGC	3 cut(s)	231, 418, 460
Bme1390I	CCNGG	4 cut(s)	51, 499, 567, 630
BmiI	GGNNCC	3 cut(s)	84, 519, 620
BmrFI	CCNGG	4 cut(s)	51, 499, 567, 630
BmsI	GCATC	2 cut(s)	525, 627
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	51
BsaJI	CCNNGG	7 cut(s)	50, 219, 393, 498, 566, 629, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 629
BseBI	CCWGG	3 cut(s)	499, 567, 630
BseDI	CCNNGG	7 cut(s)	50, 219, 393, 498, 566, 629, 652
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	431, 629
BseMII	CTCAG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	530
BseXI	GCAGC	3 cut(s)	216, 403, 470
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	431, 629
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1720I	GCTNAGC	1 cut(s)	412
Bsp19I	CCATGG	2 cut(s)	393, 652
BspCNI	CTCAG	1 cut(s)	425
BspLI	GGNNCC	3 cut(s)	84, 519, 620
BssECI	CCNNGG	7 cut(s)	50, 219, 393, 498, 566, 629, 652
BssT1I	CCWWGG	3 cut(s)	219, 393, 652
Bst2UI	CCWGG	3 cut(s)	499, 567, 630
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	705
BstDEI	CTNAG	1 cut(s)	412
BstDSI	CCRYGG	2 cut(s)	393, 652
BstF5I	GGATG	1 cut(s)	603
BstMAI	GTCTC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 544
BstNI	CCWGG	3 cut(s)	499, 567, 630
BstSCI	CCNGG	4 cut(s)	49, 497, 565, 628
BstV1I	GCAGC	3 cut(s)	216, 403, 470
BstV2I	GAAGAC	1 cut(s)	687
BstXI	CCANNNNNNTGG	1 cut(s)	566
BtgI	CCRYGG	2 cut(s)	393, 652
BtsCI	GGATG	1 cut(s)	603
CviAII	CATG	5 cut(s)	346, 394, 653, 688, 701
DdeI	CTNAG	1 cut(s)	412
DraI	TTTAAA	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco130I	CCWWGG	3 cut(s)	219, 393, 652
Eco24I	GRGCYC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	476
EcoRII	CCWGG	3 cut(s)	497, 565, 628
EcoT14I	CCWWGG	3 cut(s)	219, 393, 652
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	3 cut(s)	219, 393, 652
FaeI	CATG	5 cut(s)	349, 397, 656, 691, 704
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	5 cut(s)	345, 393, 652, 687, 700
Fnu4HI	GCNGC	3 cut(s)	230, 417, 459
FokI	GGATG	1 cut(s)	610
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	230, 417, 459
FspBI	CTAG	3 cut(s)	122, 450, 539
GluI	GCNGC	3 cut(s)	230, 417, 459
GsuI	CTGGAG	1 cut(s)	312
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	5 cut(s)	349, 397, 656, 691, 704
HincII	GTYRAC	2 cut(s)	130, 186
HindII	GTYRAC	2 cut(s)	130, 186
HinfI	GANTC	2 cut(s)	373, 704
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	3 cut(s)	39, 208, 651
Hpy166II	GTNNAC	3 cut(s)	130, 186, 673
Hpy188I	TCNGA	4 cut(s)	495, 514, 534, 709
Hpy188III	TCNNGA	1 cut(s)	291
Hpy8I	GTNNAC	3 cut(s)	130, 186, 673
Hpy99I	CGWCG	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4V	TGCA	4 cut(s)	232, 247, 419, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 544
HpyF3I	CTNAG	1 cut(s)	412
Hsp92II	CATG	5 cut(s)	349, 397, 656, 691, 704
LmnI	GCTCC	4 cut(s)	82, 212, 479, 517
Lsp1109I	GCAGC	3 cut(s)	216, 403, 470
LweI	GCATC	2 cut(s)	525, 627
MaeI	CTAG	3 cut(s)	122, 450, 539
MaeIII	GTNAC	2 cut(s)	45, 283
MboII	GAAGA	2 cut(s)	482, 692
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	4 cut(s)	110, 191, 248, 526
MlyI	GAGTC	2 cut(s)	367, 713
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	5 cut(s)	8, 52, 508, 672, 706
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	2 cut(s)	229, 416
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	4 cut(s)	51, 499, 567, 630
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	3 cut(s)	499, 567, 630
MwoI	GCNNNNNNNGC	2 cut(s)	152, 544
NciI	CCSGG	1 cut(s)	51
NcoI	CCATGG	2 cut(s)	393, 652
NlaIII	CATG	5 cut(s)	349, 397, 656, 691, 704
NlaIV	GGNNCC	3 cut(s)	84, 519, 620
NmuCI	GTSAC	1 cut(s)	45
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	3 cut(s)	231, 418, 460
PleI	GAGTC	2 cut(s)	367, 712
PpsI	GAGTC	2 cut(s)	367, 712
Psp6I	CCWGG	3 cut(s)	497, 565, 628
PspGI	CCWGG	3 cut(s)	497, 565, 628
PspN4I	GGNNCC	3 cut(s)	84, 519, 620
PvuII	CAGCTG	2 cut(s)	229, 416
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	230, 417, 459
SchI	GAGTC	2 cut(s)	367, 713
ScrFI	CCNGG	4 cut(s)	51, 499, 567, 630
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	525, 627
SmiMI	CAYNNNNRTG	1 cut(s)	596
Sse9I	AATT	4 cut(s)	110, 191, 248, 526
SspMI	CTAG	3 cut(s)	122, 450, 539
StyD4I	CCNGG	4 cut(s)	49, 497, 565, 628
StyI	CCWWGG	3 cut(s)	219, 393, 652
TaaI	ACNGT	1 cut(s)	613
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	110, 191, 248, 526
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	3 cut(s)	229, 416, 458
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	90, 362
TspGWI	ACGGA	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	3 cut(s)	122, 450, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.