Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Reverse (-)

64231424 .. 64236037

Gene Structure 4614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAATGATGGAACTGATTTACATTTATCTCTTCTTAACCAGTTCTCTATGGCTCATTCTGGTTGCCAAACTTTGGGTGGCTTTGAGTTTTCTAGTAAAGCAGAGAGATCAAGGTTTTTGGGTGCTGATAATCTGCAGATCAGAGATTTTGTTTTAGAGGAGCCATTTGATACTCAGATGCTAGGGCAGCATGATTCTCTCCAAACTCCCGGGGTTAGTAGCCAGAGGCTATCTATTGGGGTCACACCCAAAACGCGAAGGCTCCCAAAGCCTGGGGAGACCCTTTTATCTGTCCATGGATCGCCCCTCGGTGTTTACAAGGAAGATGATATGGAAGCCATAAATGAGTCAGAAGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.18

Weight (kDa)

4.81

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	73, 272
AccII	CGCG	1 cut(s)	256
AclWI	GGATC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	73, 272
AjnI	CCWGG	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	210, 211
AvaI	CYCGRG	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	2 cut(s)	210, 211
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	93, 182
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	3 cut(s)	210, 211, 273
BmeT110I	CYCGRG	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	162, 263
BmrFI	CCNGG	3 cut(s)	210, 211, 273
BmsI	GCATC	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	210, 211
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	5 cut(s)	209, 210, 272, 295, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 272
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	5 cut(s)	209, 210, 272, 295, 307
BseLI	CCNNNNNNNGG	2 cut(s)	73, 272
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	73, 272
BsmAI	GTCTC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	107, 138, 299
Bsp19I	CCATGG	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	162, 263
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	5 cut(s)	209, 210, 272, 295, 307
BssMI	GATC	3 cut(s)	107, 138, 299
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	36, 348
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	110, 141, 302
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	3 cut(s)	107, 138, 299
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 268
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	3 cut(s)	208, 209, 271
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	295
Cfr9I	CCCGGG	1 cut(s)	209
CviAII	CATG	2 cut(s)	191, 296
CviJI	RGCY	8 cut(s)	53, 81, 163, 222, 229, 262, 271, 338
CviKI_1	RGCY	8 cut(s)	53, 81, 163, 222, 229, 262, 271, 338
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	109, 140, 301
DpnII	GATC	3 cut(s)	107, 138, 299
Eam1104I	CTCTTC	2 cut(s)	36, 348
EarI	CTCTTC	2 cut(s)	36, 348
Eco130I	CCWWGG	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	194, 299
FaiI	YATR	5 cut(s)	50, 192, 297, 332, 341
FatI	CATG	2 cut(s)	190, 295
Fnu4HI	GCNGC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	2 cut(s)	93, 182
GluI	GCNGC	1 cut(s)	188
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	2 cut(s)	194, 299
HinfI	GANTC	2 cut(s)	194, 347
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	143, 177, 352
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 268
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	194, 299
Kzo9I	GATC	3 cut(s)	107, 138, 299
LmnI	GCTCC	2 cut(s)	160, 267
LpnPI	CCDG	6 cut(s)	45, 53, 223, 236, 258, 285
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	93, 182
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	109, 140, 301
MboI	GATC	3 cut(s)	107, 138, 299
MboII	GAAGA	2 cut(s)	23, 335
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	4 cut(s)	151, 219, 317, 349
MseI	TTAA	1 cut(s)	36
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	3 cut(s)	210, 211, 273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	187, 268
NciI	CCSGG	2 cut(s)	210, 211
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	3 cut(s)	107, 138, 299
NlaIII	CATG	2 cut(s)	194, 299
NlaIV	GGNNCC	2 cut(s)	162, 263
NmuCI	GTSAC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	2 cut(s)	73, 272
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	162, 263
PstI	CTGCAG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	3 cut(s)	107, 138, 299
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	210, 211, 273
SetI	ASST	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	1 cut(s)	134
SmaI	CCCGGG	1 cut(s)	211
SspMI	CTAG	2 cut(s)	93, 182
StyD4I	CCNGG	3 cut(s)	208, 209, 271
StyI	CCWWGG	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	209
Van91I	CCANNNNNTGG	2 cut(s)	73, 272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmaI	CCCGGG	1 cut(s)	209
XspI	CTAG	2 cut(s)	93, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.