Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Reverse (-)

3933235 .. 3935175

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCAAGGAAAAGAGGTAGGAAACCTGTAAAGCAACTTGCCTTGTCACCCAAACCAGATTTAAACGTTGCCGATGATAAGGAGCCCCGGATTGAGAAGCAAGAAGCTCAATTCACAGACCCAGATGTTGAGCGGCAAATATCTGCCATTAGGGCCATCCGTGATGTGGAGATTGAACATCTGCTGACTGAATTGCGTTTGCTCCGCTCCTATTTCACCAAGGAACAGCTGCAAACCCCTTTATTGCAATTTTTTAAAGACAACTATCAAAACCTGTCGATTGTATCAAATGGAGAAAATGGACAGATGGAAGTCCAATGGCTTGATAAAGACAGAAATGTGTCCATGAATGATGGAATAGATTTACATAAGACTCTTTTTCGCCGGTTGTCCATGGCTTATTCTGGCTGCTCAGCTGCAATCCCGCCCTTAGGTGGCTTTGAGTTTTCTAGTAAAGCAGAGAGAACAAGCATTCTGGGAGCTGATAATCTTCAGATCAGAGACTTTGTTTCTGAGGAGCCATTTGATTCTCTGATGTTTGGGAAGCAAGATACTCTCCAAACTCCTGGGGTTAGTAGCCAAAGGCTGTCTATTGGGATGACACCCAAAACGGTTAGGTTCCCAAAGCCTGGGGAGATGCTTTTATCTGTCCATGGCTCACCTCTCGGTGTTTACAAGGAAGACAACATGGAAGCCATACATGAGTCGGAAGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

27.04

Weight (kDa)

5.53

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccBSI	CCGCTC	2 cut(s)	133, 207
AciI	CCGC	3 cut(s)	133, 205, 425
AclI	AACGTT	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	476
AfiI	CCNNNNNNNGG	4 cut(s)	166, 431, 434, 629
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	565, 628
AluBI	AGCT	4 cut(s)	107, 229, 416, 482
AluI	AGCT	4 cut(s)	107, 229, 416, 482
Alw26I	GTCTC	1 cut(s)	495
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	229, 408, 416
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	39, 208, 651
AxyI	CCTNAGG	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	216, 395, 403
BccI	CCATC	3 cut(s)	164, 301, 347
BciT130I	CCWGG	2 cut(s)	567, 630
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	1 cut(s)	450
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	4 cut(s)	134, 230, 409, 417
BlpI	GCTNAGC	1 cut(s)	412
BlsI	GCNGC	4 cut(s)	135, 231, 410, 418
Bme1390I	CCNGG	3 cut(s)	88, 567, 630
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	84, 519, 620
BmrFI	CCNGG	3 cut(s)	88, 567, 630
BmsI	GCATC	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	88
BsaJI	CCNNGG	6 cut(s)	86, 219, 393, 566, 629, 652
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 431, 434, 629
Bse118I	RCCGGY	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	430
BseBI	CCWGG	2 cut(s)	567, 630
BseDI	CCNNGG	6 cut(s)	86, 219, 393, 566, 629, 652
BseGI	GGATG	2 cut(s)	156, 603
BseLI	CCNNNNNNNGG	4 cut(s)	166, 431, 434, 629
BseMII	CTCAG	2 cut(s)	426, 504
BseRI	GAGGAG	1 cut(s)	530
BseXI	GCAGC	3 cut(s)	216, 395, 403
BshFI	GGCC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	88, 385
BslI	CCNNNNNNNGG	4 cut(s)	166, 431, 434, 629
BsmAI	GTCTC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	495
Bsp1720I	GCTNAGC	1 cut(s)	412
Bsp19I	CCATGG	2 cut(s)	393, 652
BspACI	CCGC	3 cut(s)	133, 205, 425
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	425, 505
BspLI	GGNNCC	3 cut(s)	84, 519, 620
BsrBI	CCGCTC	2 cut(s)	133, 207
BsrFI	RCCGGY	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	6 cut(s)	86, 219, 393, 566, 629, 652
BssMI	GATC	1 cut(s)	495
BssT1I	CCWWGG	3 cut(s)	219, 393, 652
Bst2UI	CCWGG	2 cut(s)	567, 630
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	705
BstDEI	CTNAG	3 cut(s)	412, 430, 513
BstDSI	CCRYGG	2 cut(s)	393, 652
BstF5I	GGATG	2 cut(s)	156, 603
BstKTI	GATC	1 cut(s)	498
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	1 cut(s)	495
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	567, 630
BstSCI	CCNGG	3 cut(s)	86, 565, 628
BstV1I	GCAGC	3 cut(s)	216, 395, 403
BstV2I	GAAGAC	1 cut(s)	687
BstXI	CCANNNNNNTGG	1 cut(s)	566
Bsu36I	CCTNAGG	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	2 cut(s)	393, 652
BtsCI	GGATG	2 cut(s)	156, 603
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	153
CviAII	CATG	5 cut(s)	346, 394, 653, 688, 701
DdeI	CTNAG	3 cut(s)	412, 430, 513
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
DraI	TTTAAA	2 cut(s)	63, 256
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco130I	CCWWGG	3 cut(s)	219, 393, 652
Eco24I	GRGCYC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	476
Eco81I	CCTNAGG	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	565, 628
EcoT14I	CCWWGG	3 cut(s)	219, 393, 652
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	3 cut(s)	219, 393, 652
FaeI	CATG	5 cut(s)	349, 397, 656, 691, 704
FaiI	YATR	7 cut(s)	347, 369, 395, 654, 689, 698, 702
FatI	CATG	5 cut(s)	345, 393, 652, 687, 700
FauI	CCCGC	1 cut(s)	432
Fnu4HI	GCNGC	4 cut(s)	134, 230, 409, 417
FokI	GGATG	2 cut(s)	143, 610
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	134, 230, 409, 417
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	4 cut(s)	134, 230, 409, 417
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	88, 385
Hin1II	CATG	5 cut(s)	349, 397, 656, 691, 704
HinfI	GANTC	3 cut(s)	373, 527, 704
HpaII	CCGG	2 cut(s)	88, 385
HphI	GGTGA	3 cut(s)	39, 208, 651
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	5 cut(s)	495, 500, 514, 534, 709
Hpy8I	GTNNAC	1 cut(s)	673
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	232, 247, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	3 cut(s)	412, 430, 513
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	349, 397, 656, 691, 704
Kzo9I	GATC	1 cut(s)	495
LmnI	GCTCC	5 cut(s)	82, 207, 212, 479, 517
Lsp1109I	GCAGC	3 cut(s)	216, 395, 403
LweI	GCATC	1 cut(s)	627
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	1 cut(s)	497
MbiI	CCGCTC	2 cut(s)	133, 207
MboI	GATC	1 cut(s)	495
MboII	GAAGA	2 cut(s)	482, 692
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	110, 191, 248
MlyI	GAGTC	2 cut(s)	367, 713
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	4 cut(s)	8, 508, 672, 706
MseI	TTAA	2 cut(s)	62, 255
MspA1I	CMGCKG	2 cut(s)	229, 416
MspI	CCGG	2 cut(s)	88, 385
MspR9I	CCNGG	3 cut(s)	88, 567, 630
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	2 cut(s)	567, 630
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	88
NcoI	CCATGG	2 cut(s)	393, 652
NdeII	GATC	1 cut(s)	495
NlaIII	CATG	5 cut(s)	349, 397, 656, 691, 704
NlaIV	GGNNCC	3 cut(s)	84, 519, 620
NmuCI	GTSAC	1 cut(s)	45
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	135, 231, 410, 418
PleI	GAGTC	2 cut(s)	367, 712
PpsI	GAGTC	2 cut(s)	367, 712
Psp1406I	AACGTT	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	565, 628
PspGI	CCWGG	2 cut(s)	565, 628
PspN4I	GGNNCC	3 cut(s)	84, 519, 620
PspPI	GGNCC	1 cut(s)	153
PvuII	CAGCTG	2 cut(s)	229, 416
SaqAI	TTAA	2 cut(s)	62, 255
SatI	GCNGC	4 cut(s)	134, 230, 409, 417
Sau3AI	GATC	1 cut(s)	495
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	2 cut(s)	367, 713
ScrFI	CCNGG	3 cut(s)	88, 567, 630
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	1 cut(s)	627
Sse9I	AATT	3 cut(s)	110, 191, 248
SsiI	CCGC	3 cut(s)	133, 205, 425
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	86, 565, 628
StyI	CCWWGG	3 cut(s)	219, 393, 652
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	110, 191, 248
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	2 cut(s)	62, 255
Tru9I	TTAA	2 cut(s)	62, 255
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	3 cut(s)	229, 408, 416
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	149
Van91I	CCANNNNNTGG	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.