Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Reverse (-)

18906316 .. 18908042

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0202200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCACTGCCAATTCTTGATGGCATGTCTTTCTCCCACCTGGGGGTTTCTTTTGAAGGATGCCTGCATGTGACGAGTCAGGTGCCGTTTGCTTATGAGTGTATTGGTTTGTGGGTAATGAGAGAATATGGCGTGCCTGGCTCCTGGATAAAGCTATTTAACATAAATTTTGAATCGCTTGAGCGGATAATTTTTACCACAGCAATAGTGGTAATGGAGAAGAGTGTAGTTTTGGGTCTATGGAGAGGGAATGACCATGACAAGAACTTAATGATTAAGGTTGATCATGGAAATGGGAGTGGGGAAAAGAACTTGATGATTAAGGTTGATCATGGTGATGGGAGTCTTGGTGAGTATACGCTGCCAGCAGCTGGTTTGGGTCTGCATGACGTAATTGAATATGAAGAAAGTCTGCTTTGGATTAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.95

Weight (kDa)

4.89

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	356
AciI	CCGC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	166
AfiI	CCNNNNNNNGG	3 cut(s)	42, 43, 371
AgsI	TTSAA	3 cut(s)	56, 173, 398
AjnI	CCWGG	3 cut(s)	39, 136, 143
AluBI	AGCT	2 cut(s)	154, 371
AluI	AGCT	2 cut(s)	154, 371
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	361, 368
ApoI	RAATTY	1 cut(s)	166
AseI	ATTAAT	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	347, 362
BanI	GGYRCC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	348, 380
BccI	CCATC	2 cut(s)	14, 332
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	3 cut(s)	41, 138, 145
BclI	TGATCA	2 cut(s)	283, 328
BisI	GCNGC	2 cut(s)	362, 369
BlsI	GCNGC	2 cut(s)	363, 370
Bme1390I	CCNGG	3 cut(s)	41, 138, 145
BmiI	GGNNCC	2 cut(s)	84, 142
BmrFI	CCNGG	3 cut(s)	41, 138, 145
BmsI	GCATC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 43, 371
BseBI	CCWGG	3 cut(s)	41, 138, 145
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	3 cut(s)	42, 43, 371
BseXI	GCAGC	2 cut(s)	348, 380
BshNI	GGYRCC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	42, 43, 371
Bsp143I	GATC	2 cut(s)	283, 328
BspACI	CCGC	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	84, 142
BspT107I	GGYRCC	1 cut(s)	82
BsrBI	CCGCTC	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	283, 328
BssNAI	GTATAC	1 cut(s)	357
Bst1107I	GTATAC	1 cut(s)	357
Bst2UI	CCWGG	3 cut(s)	41, 138, 145
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	3 cut(s)	65, 134, 366
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	2 cut(s)	286, 331
BstMBI	GATC	2 cut(s)	283, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	3 cut(s)	41, 138, 145
BstNSI	RCATGY	2 cut(s)	28, 71
BstSCI	CCNGG	3 cut(s)	39, 136, 143
BstV1I	GCAGC	2 cut(s)	348, 380
BstZ17I	GTATAC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	3 cut(s)	65, 134, 366
CaiI	CAGNNNCTG	1 cut(s)	371
CviAII	CATG	6 cut(s)	25, 68, 257, 287, 332, 386
CviJI	RGCY	3 cut(s)	141, 154, 371
CviKI_1	RGCY	3 cut(s)	141, 154, 371
DpnI	GATC	2 cut(s)	285, 330
DpnII	GATC	2 cut(s)	283, 328
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EcoRII	CCWGG	3 cut(s)	39, 136, 143
FaeI	CATG	6 cut(s)	28, 71, 260, 290, 335, 389
FatI	CATG	6 cut(s)	24, 67, 256, 286, 331, 385
FbaI	TGATCA	2 cut(s)	283, 328
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	362, 369
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	362, 369
GluI	GCNGC	2 cut(s)	362, 369
Hin1II	CATG	6 cut(s)	28, 71, 260, 290, 335, 389
HinfI	GANTC	3 cut(s)	76, 173, 343
HphI	GGTGA	2 cut(s)	347, 362
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	67, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	6 cut(s)	28, 71, 260, 290, 335, 389
Ksp22I	TGATCA	2 cut(s)	283, 328
Kzo9I	GATC	2 cut(s)	283, 328
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	2 cut(s)	348, 380
LweI	GCATC	1 cut(s)	50
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	285, 330
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	2 cut(s)	283, 328
MboII	GAAGA	2 cut(s)	232, 416
MluCI	AATT	4 cut(s)	12, 166, 189, 393
MlyI	GAGTC	2 cut(s)	85, 352
MnlI	CCTC	1 cut(s)	239
MseI	TTAA	5 cut(s)	159, 269, 276, 321, 423
MslI	CAYNNNNRTG	2 cut(s)	291, 336
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	3 cut(s)	41, 138, 145
MvaI	CCWGG	3 cut(s)	41, 138, 145
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	2 cut(s)	283, 328
NlaIII	CATG	6 cut(s)	28, 71, 260, 290, 335, 389
NlaIV	GGNNCC	2 cut(s)	84, 142
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	2 cut(s)	28, 71
PfeI	GAWTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	363, 370
PleI	GAGTC	2 cut(s)	84, 351
PpsI	GAGTC	2 cut(s)	84, 351
PshBI	ATTAAT	1 cut(s)	423
Psp6I	CCWGG	3 cut(s)	39, 136, 143
PspGI	CCWGG	3 cut(s)	39, 136, 143
PspN4I	GGNNCC	2 cut(s)	84, 142
PstNI	CAGNNNCTG	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	371
RseI	CAYNNNNRTG	2 cut(s)	291, 336
SaqAI	TTAA	5 cut(s)	159, 269, 276, 321, 423
SatI	GCNGC	2 cut(s)	362, 369
Sau3AI	GATC	2 cut(s)	283, 328
SchI	GAGTC	2 cut(s)	85, 352
ScrFI	CCNGG	3 cut(s)	41, 138, 145
SetI	ASST	7 cut(s)	42, 84, 156, 282, 327, 373, 393
SfaNI	GCATC	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	291, 336
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	4 cut(s)	12, 166, 189, 393
SsiI	CCGC	1 cut(s)	184
StyD4I	CCNGG	3 cut(s)	39, 136, 143
TaiI	ACGT	1 cut(s)	393
TasI	AATT	4 cut(s)	12, 166, 189, 393
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	5 cut(s)	159, 269, 276, 321, 423
Tru9I	TTAA	5 cut(s)	159, 269, 276, 321, 423
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	361, 368
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	166
XceI	RCATGY	2 cut(s)	28, 71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.