Prupe.8G078400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0002677
Physical Location & Seq
Forward (+)
11258287 .. 11260733
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G078400.1

Sequence Viewer

Length: 681 bp
ATGCCTTTAAAAACACTGCCAGTGACCGATTTCAATGTTGCGGAGGCAAAGCAGCCCCAGAATGCGAAACAAGAAGCTCAATTCACAGACCCAGATGTTGAGTGGCAAATTTCTGCCATTAGGGCTATTCGTGATGTTGAGACTGAACATCTCCTGACTAATTTGCGTTTGCTTCGCTCCTACTTCAACAAGGAACAGCAGCGAACCCCTCTATTGCAATATTTTAAAGAGAACTTTCAAAACCTGTCGAATGTAAGAAATGGAGAAAATGGACAAATGGAAGTGCAATGGATTGATAAAGATGGCAATGTATCCATGAATGATGGAATGGATTTACATGAGACTCTTCTTCGCCGGTTGTCCATTGCTTATTCTGGTTGTTCAGCAGCAATTCCATCTCTTGGTGGCTTTGAGTTTTCTAGTAAAGCAGATAAAACAAGCCTTCTGGGTGCTGATAATCTGCAGATCAGCGACTTTGAGCCATTTGATAGTCTGATGCTAGGGAAGCAAGATACTCTCCAAACTCCTGGGGTGAGTAGCCAGAGACTGTCTATTGGGATGACACCGAAGACGCGAAGGCTCCCGAAGCCTGGGGAGATGCTCTTATCTGTCCATGGCTCACCCCTAGGTGTTTACAAGGAAGACAACATGGAAGCCATACATGAGTCGGAAGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.36

Weight (kDa)

5.0

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 401
AccII CGCG 1 cut(s) 574
AciI CCGC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 401, 590
AgsI TTSAA 3 cut(s) 34, 187, 239
AjnI CCWGG 2 cut(s) 526, 589
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 3 cut(s) 134, 335, 538
AlwNI CAGNNNCTG 1 cut(s) 547
ApeKI GCWGC 3 cut(s) 52, 199, 386
ApoI RAATTY 1 cut(s) 108
AspA2I CCTAGG 1 cut(s) 625
AsuHPI GGTGA 2 cut(s) 544, 612
AvrII CCTAGG 1 cut(s) 625
BbsI GAAGAC 2 cut(s) 575, 648
BbvI GCAGC 3 cut(s) 64, 211, 398
BccI CCATC 3 cut(s) 296, 317, 403
BciT130I CCWGG 2 cut(s) 528, 591
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 3 cut(s) 134, 335, 538
BfaI CTAG 3 cut(s) 420, 500, 626
BfmI CTRYAG 1 cut(s) 461
BfuI GTATCC 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 3 cut(s) 53, 200, 387
BlnI CCTAGG 1 cut(s) 625
BlsI GCNGC 3 cut(s) 54, 201, 388
Bme1390I CCNGG 2 cut(s) 528, 591
BmiI GGNNCC 1 cut(s) 581
BmrFI CCNGG 2 cut(s) 528, 591
BmsI GCATC 2 cut(s) 486, 588
BpiI GAAGAC 2 cut(s) 575, 648
BsaJI CCNNGG 4 cut(s) 527, 590, 613, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 590
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 3 cut(s) 293, 313, 363
BseBI CCWGG 2 cut(s) 528, 591
BseDI CCNNGG 4 cut(s) 527, 590, 613, 625
BseGI GGATG 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 401, 590
BseMI GCAATG 3 cut(s) 293, 313, 363
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 64, 211, 398
Bsh1236I CGCG 1 cut(s) 574
BsiSI CCGG 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 401, 590
BsmAI GTCTC 3 cut(s) 134, 335, 538
BsmI GAATGC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 465
Bsp19I CCATGG 1 cut(s) 613
BspACI CCGC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 581
BspMAI CTGCAG 1 cut(s) 465
BsrDI GCAATG 3 cut(s) 293, 313, 363
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 4 cut(s) 527, 590, 613, 625
BssMI GATC 1 cut(s) 465
BssT1I CCWWGG 2 cut(s) 613, 625
Bst2UI CCWGG 2 cut(s) 528, 591
Bst4CI ACNGT 1 cut(s) 549
Bst6I CTCTTC 2 cut(s) 351, 666
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 1 cut(s) 564
BstFNI CGCG 1 cut(s) 574
BstKTI GATC 1 cut(s) 468
BstMAI GTCTC 3 cut(s) 134, 335, 538
BstMBI GATC 1 cut(s) 465
BstMWI GCNNNNNNNGC 3 cut(s) 122, 505, 586
BstNI CCWGG 2 cut(s) 528, 591
BstSCI CCNGG 2 cut(s) 526, 589
BstSFI CTRYAG 1 cut(s) 461
BstUI CGCG 1 cut(s) 574
BstV1I GCAGC 3 cut(s) 64, 211, 398
BstV2I GAAGAC 2 cut(s) 575, 648
BstXI CCANNNNNNTGG 1 cut(s) 527
BsuI GTATCC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 613
BtsCI GGATG 1 cut(s) 564
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 14, 27
CaiI CAGNNNCTG 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 354
CseI GACGC 1 cut(s) 580
CviAII CATG 5 cut(s) 316, 338, 614, 649, 662
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DraI TTTAAA 2 cut(s) 9, 226
Eam1104I CTCTTC 2 cut(s) 351, 666
EarI CTCTTC 2 cut(s) 351, 666
Eco130I CCWWGG 2 cut(s) 613, 625
EcoRII CCWGG 2 cut(s) 526, 589
EcoT14I CCWWGG 2 cut(s) 613, 625
ErhI CCWWGG 2 cut(s) 613, 625
FaeI CATG 5 cut(s) 319, 341, 617, 652, 665
FaiI YATR 6 cut(s) 317, 339, 615, 650, 659, 663
FatI CATG 5 cut(s) 315, 337, 613, 648, 661
Fnu4HI GCNGC 3 cut(s) 53, 200, 387
FokI GGATG 1 cut(s) 571
Fsp4HI GCNGC 3 cut(s) 53, 200, 387
FspBI CTAG 3 cut(s) 420, 500, 626
GluI GCNGC 3 cut(s) 53, 200, 387
HapII CCGG 1 cut(s) 355
HgaI GACGC 1 cut(s) 580
Hin1II CATG 5 cut(s) 319, 341, 617, 652, 665
HinfI GANTC 2 cut(s) 343, 665
HpaII CCGG 1 cut(s) 355
HphI GGTGA 2 cut(s) 544, 612
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 2 cut(s) 495, 670
Hpy188III TCNNGA 3 cut(s) 131, 154, 583
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 2 cut(s) 452, 570
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4V TGCA 3 cut(s) 217, 286, 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 505, 586
Hsp92II CATG 5 cut(s) 319, 341, 617, 652, 665
Kzo9I GATC 1 cut(s) 465
LmnI GCTCC 2 cut(s) 182, 585
Lsp1109I GCAGC 3 cut(s) 64, 211, 398
LweI GCATC 2 cut(s) 486, 588
MaeI CTAG 3 cut(s) 420, 500, 626
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 467
MboI GATC 1 cut(s) 465
MboII GAAGA 4 cut(s) 338, 341, 580, 653
MluCI AATT 4 cut(s) 80, 108, 160, 390
MlyI GAGTC 2 cut(s) 337, 674
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 3 cut(s) 37, 219, 667
MseI TTAA 2 cut(s) 8, 225
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 2 cut(s) 528, 591
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 2 cut(s) 528, 591
MvnI CGCG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 122, 505, 586
NcoI CCATGG 1 cut(s) 613
NdeII GATC 1 cut(s) 465
NlaIII CATG 5 cut(s) 319, 341, 617, 652, 665
NlaIV GGNNCC 1 cut(s) 581
NmuCI GTSAC 1 cut(s) 22
PctI GAATGC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 3 cut(s) 54, 201, 388
PleI GAGTC 2 cut(s) 337, 673
PpsI GAGTC 2 cut(s) 337, 673
Psp6I CCWGG 2 cut(s) 526, 589
PspGI CCWGG 2 cut(s) 526, 589
PspN4I GGNNCC 1 cut(s) 581
PstI CTGCAG 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 547
SaqAI TTAA 2 cut(s) 8, 225
SatI GCNGC 3 cut(s) 53, 200, 387
Sau3AI GATC 1 cut(s) 465
SchI GAGTC 2 cut(s) 337, 674
ScrFI CCNGG 2 cut(s) 528, 591
SetI ASST 3 cut(s) 79, 246, 631
SfaNI GCATC 2 cut(s) 486, 588
SfcI CTRYAG 1 cut(s) 461
Sse9I AATT 4 cut(s) 80, 108, 160, 390
SsiI CCGC 1 cut(s) 41
SspI AATATT 1 cut(s) 221
SspMI CTAG 3 cut(s) 420, 500, 626
StyD4I CCNGG 2 cut(s) 526, 589
StyI CCWWGG 2 cut(s) 613, 625
TaaI ACNGT 1 cut(s) 549
TaqI TCGA 1 cut(s) 248
TaqII GACCGA 1 cut(s) 41
TasI AATT 4 cut(s) 80, 108, 160, 390
Tru1I TTAA 2 cut(s) 8, 225
Tru9I TTAA 2 cut(s) 8, 225
TscAI CASTG 2 cut(s) 21, 27
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 52, 199, 386
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 332
TspRI CASTG 2 cut(s) 21, 27
Van91I CCANNNNNTGG 1 cut(s) 401
XapI RAATTY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XmaJI CCTAGG 1 cut(s) 625
XspI CTAG 3 cut(s) 420, 500, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.