Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Forward (+)

17513530 .. 17518240

Gene Structure 4711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAAGAGAAGGAGCCAAAAGAACTGTACAGAAAGTTGCTGAGGAAATGGAGACCCAGAATGAGAGGCTGGAAGATCAGTTCTCGGACCCGGATGTTGAACGACGAATTTCTGCCATTAAGGCTGTTCGTGATGTGGAGATTGAACATGTGCTGACCAAATTGCATTTGCTTCGCTCATATTGCACCAAGGAGCAGCGGGAAACACCGGTTTTGCAATTTTTCAAAGAAAACTTTCCAAACCTGTCCTTTGTAAAAACTGAAGAAAATGGACATCTACGACTTCAGTGGATTGGTGAGGATGGCAATGTATCCATGAATGATGGACCCAATTTACATTTTTCTCTTCTTAACCAGTTCTCAGTGGCTCACTCTGGTTGCCAAACTTTGGGTGGCTTTGAGTTTTCTATTAAAGCAGAGAGATCAAGGTTTTTGGGTGCTGATAATCTGCAGATAAGAGATTTTGTTTTAGAGGAGCCATTTGATACACAGATGCCAGGGCAGAATGATTCCCTCCAAACTCCCGGGGTCTGTAGCCAGAGGCTATCTATTGGGATCACACCTAAAACGGTAAGGCTTCCAAAGCCTGGGGAGACCCTTTTATCTGTCCATGGATCTCCCCTTGGTGTCTACAAGGAAGAGAATATGGAAGCCATACATGAGTCAGGAGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.4

Weight (kDa)

5.24

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	388, 587
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	2 cut(s)	563, 622
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	2 cut(s)	269, 282
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	388, 587
AflIII	ACRYGT	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	3 cut(s)	101, 146, 226
AjnI	CCWGG	2 cut(s)	496, 586
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
Alw26I	GTCTC	2 cut(s)	47, 587
AlwI	GGATC	2 cut(s)	563, 622
Ama87I	CYCGRG	1 cut(s)	524
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	108
AsiGI	ACCGGT	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	88, 326
AsuC2I	CCSGG	3 cut(s)	92, 525, 526
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	2 cut(s)	88, 326
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	296, 317
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	2 cut(s)	498, 588
BciVI	GTATCC	1 cut(s)	322
BcnI	CCSGG	3 cut(s)	92, 525, 526
BcoDI	GTCTC	2 cut(s)	47, 587
BfmI	CTRYAG	2 cut(s)	449, 532
BfuI	GTATCC	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	5 cut(s)	92, 498, 525, 526, 588
Bme18I	GGWCC	2 cut(s)	88, 326
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	88, 326
BmiI	GGNNCC	4 cut(s)	16, 90, 328, 477
BmrFI	CCNGG	5 cut(s)	92, 498, 525, 526, 588
BmsI	GCATC	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	42
BpuMI	CCSGG	3 cut(s)	92, 525, 526
BsaI	GGTCTC	2 cut(s)	47, 587
BsaJI	CCNNGG	7 cut(s)	189, 497, 524, 525, 587, 610, 622
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 587
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	498, 588
BseDI	CCNNGG	7 cut(s)	189, 497, 524, 525, 587, 610, 622
BseGI	GGATG	2 cut(s)	100, 307
BseLI	CCNNNNNNNGG	2 cut(s)	388, 587
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	33, 375
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	208
BshTI	ACCGGT	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	3 cut(s)	92, 209, 525
BslI	CCNNNNNNNGG	2 cut(s)	388, 587
BsmAI	GTCTC	2 cut(s)	47, 587
Bso31I	GGTCTC	2 cut(s)	47, 587
BsoBI	CYCGRG	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	76, 422, 555, 614
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	1 cut(s)	199
BspCNI	CTCAG	2 cut(s)	34, 374
BspLI	GGNNCC	4 cut(s)	16, 90, 328, 477
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	2 cut(s)	563, 622
BspTNI	GGTCTC	2 cut(s)	47, 587
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	7 cut(s)	189, 497, 524, 525, 587, 610, 622
BssMI	GATC	4 cut(s)	76, 422, 555, 614
BssT1I	CCWWGG	3 cut(s)	189, 610, 622
Bst2UI	CCWGG	2 cut(s)	498, 588
Bst4CI	ACNGT	2 cut(s)	28, 571
Bst6I	CTCTTC	2 cut(s)	351, 633
BstAUI	TGTACA	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	42, 361
BstDSI	CCRYGG	1 cut(s)	610
BstF5I	GGATG	2 cut(s)	100, 307
BstKTI	GATC	4 cut(s)	79, 425, 558, 617
BstMAI	GTCTC	2 cut(s)	47, 587
BstMBI	GATC	4 cut(s)	76, 422, 555, 614
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 183, 583
BstNI	CCWGG	2 cut(s)	498, 588
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	5 cut(s)	90, 496, 523, 524, 586
BstSFI	CTRYAG	2 cut(s)	449, 532
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	610
BtsCI	GGATG	2 cut(s)	100, 307
BtsIMutI	CAGTG	2 cut(s)	293, 369
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	88, 326
Cfr9I	CCCGGG	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	29
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	4 cut(s)	149, 316, 611, 659
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	42, 361
DpnI	GATC	4 cut(s)	78, 424, 557, 616
DpnII	GATC	4 cut(s)	76, 422, 555, 614
Eam1104I	CTCTTC	2 cut(s)	351, 633
EarI	CTCTTC	2 cut(s)	351, 633
Eco130I	CCWWGG	3 cut(s)	189, 610, 622
Eco31I	GGTCTC	2 cut(s)	47, 587
Eco47I	GGWCC	2 cut(s)	88, 326
Eco57I	CTGAAG	2 cut(s)	269, 282
Eco88I	CYCGRG	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	496, 586
EcoT14I	CCWWGG	3 cut(s)	189, 610, 622
ErhI	CCWWGG	3 cut(s)	189, 610, 622
FaeI	CATG	4 cut(s)	152, 319, 614, 662
FaiI	YATR	7 cut(s)	150, 181, 317, 612, 647, 656, 660
FatI	CATG	4 cut(s)	148, 315, 610, 658
FauI	CCCGC	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	2 cut(s)	107, 314
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
HapII	CCGG	3 cut(s)	92, 209, 525
Hin1II	CATG	4 cut(s)	152, 319, 614, 662
HinfI	GANTC	2 cut(s)	509, 662
HpaII	CCGG	3 cut(s)	92, 209, 525
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	131, 666
Hpy8I	GTNNAC	1 cut(s)	631
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	2 cut(s)	28, 571
HpyCH4V	TGCA	4 cut(s)	166, 186, 217, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 183, 583
HpyF3I	CTNAG	2 cut(s)	42, 361
Hsp92II	CATG	4 cut(s)	152, 319, 614, 662
Kzo9I	GATC	4 cut(s)	76, 422, 555, 614
LmnI	GCTCC	3 cut(s)	14, 193, 475
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	483
MalI	GATC	4 cut(s)	78, 424, 557, 616
MboI	GATC	4 cut(s)	76, 422, 555, 614
MboII	GAAGA	4 cut(s)	86, 275, 338, 650
MflI	RGATCY	1 cut(s)	614
MluCI	AATT	4 cut(s)	108, 161, 218, 331
MlyI	GAGTC	1 cut(s)	671
MnlI	CCTC	7 cut(s)	37, 60, 292, 466, 524, 534, 664
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	3 cut(s)	120, 351, 411
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	3 cut(s)	92, 209, 525
MspR9I	CCNGG	5 cut(s)	92, 498, 525, 526, 588
MvaI	CCWGG	2 cut(s)	498, 588
MwoI	GCNNNNNNNGC	3 cut(s)	122, 183, 583
NciI	CCSGG	3 cut(s)	92, 525, 526
NcoI	CCATGG	1 cut(s)	610
NdeII	GATC	4 cut(s)	76, 422, 555, 614
NlaIII	CATG	4 cut(s)	152, 319, 614, 662
NlaIV	GGNNCC	4 cut(s)	16, 90, 328, 477
NspI	RCATGY	1 cut(s)	152
PciI	ACATGT	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	509
PflMI	CCANNNNNTGG	2 cut(s)	388, 587
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PscI	ACATGT	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	496, 586
PspGI	CCWGG	2 cut(s)	496, 586
PspN4I	GGNNCC	4 cut(s)	16, 90, 328, 477
PspPI	GGNCC	2 cut(s)	88, 326
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	614
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	120, 351, 411
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	4 cut(s)	76, 422, 555, 614
Sau96I	GGNCC	2 cut(s)	88, 326
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	5 cut(s)	92, 498, 525, 526, 588
SetI	ASST	3 cut(s)	246, 431, 565
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	2 cut(s)	449, 532
SinI	GGWCC	2 cut(s)	88, 326
SmaI	CCCGGG	1 cut(s)	526
Sse9I	AATT	4 cut(s)	108, 161, 218, 331
SsiI	CCGC	1 cut(s)	199
StyD4I	CCNGG	5 cut(s)	90, 496, 523, 524, 586
StyI	CCWWGG	3 cut(s)	189, 610, 622
TaaI	ACNGT	2 cut(s)	28, 571
TasI	AATT	4 cut(s)	108, 161, 218, 331
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	120, 351, 411
Tru9I	TTAA	3 cut(s)	120, 351, 411
TscAI	CASTG	2 cut(s)	293, 369
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	332
TspMI	CCCGGG	1 cut(s)	524
TspRI	CASTG	2 cut(s)	293, 369
Van91I	CCANNNNNTGG	2 cut(s)	388, 587
VpaK11BI	GGWCC	2 cut(s)	88, 326
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XmaI	CCCGGG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.