Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002677

Physical Location & Seq

Genomic Coordinates Forward (+)

13871611 .. 13876979

Gene Structure 5369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAAGAAAGAGAGCTAAGAAAACTATACAGAAAGCTGAGGAAATTGAGCCCCAGAATGAGAGGCAGGAAGATCAGTTTTCTGACCCGGATGTTGAGCGAAGAATTTCTGCCATCAAGGCTGTTAGTGATGTGGAGATTCAACATGTGCTGACCAAATTGCGTTTGCTTCGCTCATATTGCACCAAGGAGCAGCGGGAAACTCCTGTTTTGCAATTTTTCAAAGAGAACTTTCCAAACCTGTCCTTTGTAAAAAGTGAAGAAAATGGGCATTTACGACTTAAGTGGATTGGTGAGGATGGCAATGTATCCATGAATGATGGACCCAATTTACATTTTTCTCTTCTTAACCAGTTCTCAGTGGCTCAATCTGGTTGCCAAACATTGGGTGGCTTTGAGTTTTCTAGTAAAGCAGAGAGATCAAGGTTTTTGGGTGCTGATAATCTGCAGATAAGAGATTTCGTAAGTTCTCTGTCGTCAATTATAGGGCTTCGCATCTGTCTCCCAAGTTTTAGAGGAGCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

8.48

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39630 AT4G39630
fragaria_vesca	FvH4_1g21950 FvH4_1g21950 FvH4_1g21950 FvH4_1g25670
malus_domestica	MD01G1016500.v1.1 MD15G1334800.v1.1
prunus_persica	Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.6G176600_v2.0.a1 Prupe.8G078400_v2.0.a1
pyrus_communis	pycom01g04760 pycom15g29070
rosa_chinensis	RchiOBHm_Chr2g0115971
rosa_laevigata	RLG00000018228
rosa_multiflora	Rmu_ssc0000197.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127620 Rroxscaffold_2G00128450
rosa_rugosa	Rorug02G0202200 Rorug02G0202300
rosa_samantha	Rh2AG258500 Rh2BG269800 Rh2CG265100 Rh2DG266900
rosa_wichuraiana	Rw2G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	385
AciI	CCGC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflII	CTTAAG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	143, 223
AluBI	AGCT	2 cut(s)	17, 38
AluI	AGCT	2 cut(s)	17, 38
Alw26I	GTCTC	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	3 cut(s)	122, 293, 314
BciVI	GTATCC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	446
BfrI	CTTAAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	325, 520
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	97, 304
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	30, 372
BseNI	ACTGG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	73, 419
BspACI	CCGC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	31, 371
BspLI	GGNNCC	2 cut(s)	325, 520
BspMAI	CTGCAG	1 cut(s)	450
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	73, 419
BssT1I	CCWWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	281
BstDEI	CTNAG	3 cut(s)	18, 39, 358
BstF5I	GGATG	2 cut(s)	97, 304
BstKTI	GATC	2 cut(s)	76, 422
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	73, 419
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 180
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	97, 304
BtsIMutI	CAGTG	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	323
CviAII	CATG	2 cut(s)	146, 313
CviJI	RGCY	8 cut(s)	17, 38, 52, 122, 365, 393, 490, 521
CviKI_1	RGCY	8 cut(s)	17, 38, 52, 122, 365, 393, 490, 521
DdeI	CTNAG	3 cut(s)	18, 39, 358
DpnI	GATC	2 cut(s)	75, 421
DpnII	GATC	2 cut(s)	73, 419
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	149, 316
FaiI	YATR	5 cut(s)	29, 147, 178, 314, 485
FatI	CATG	2 cut(s)	145, 312
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	104, 311
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	1 cut(s)	194
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	2 cut(s)	149, 316
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	183, 214, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 180
HpyF3I	CTNAG	3 cut(s)	18, 39, 358
Hsp92II	CATG	2 cut(s)	149, 316
Kzo9I	GATC	2 cut(s)	73, 419
LmnI	GCTCC	2 cut(s)	190, 518
LpnPI	CCDG	7 cut(s)	53, 68, 102, 219, 254, 357, 365
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	1 cut(s)	405
MalI	GATC	2 cut(s)	75, 421
MboI	GATC	2 cut(s)	73, 419
MboII	GAAGA	4 cut(s)	83, 114, 272, 335
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	6 cut(s)	45, 105, 158, 215, 328, 480
MnlI	CCTC	4 cut(s)	34, 57, 289, 509
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	282, 348
MspA1I	CMGCKG	1 cut(s)	196
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	119, 180
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	2 cut(s)	73, 419
NlaIII	CATG	2 cut(s)	149, 316
NlaIV	GGNNCC	2 cut(s)	325, 520
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	195
PscI	ACATGT	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	325, 520
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	282, 348
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	73, 419
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	4 cut(s)	19, 40, 243, 428
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	6 cut(s)	45, 105, 158, 215, 328, 480
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	186
TasI	AATT	6 cut(s)	45, 105, 158, 215, 328, 480
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	282, 348
Tru9I	TTAA	2 cut(s)	282, 348
TscAI	CASTG	1 cut(s)	366
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	105
XceI	RCATGY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.