AT5G01620

PMR5 N terminal Domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
232565 .. 234916
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01620.2

Sequence Viewer

Length: 1350 bp
ATGTCGCAGAGATGGAGTAGAAAGAAGAGTAGACTTCCATTAGCGGGTCTCCTCTTTATTCTCGTTGTCACCTTTATGATTCTCTTCAACGAGCGTAGCATTCAGCAGATCCATCACCACGCCGCGAGTCACACTCAAAATCTCCGAGAACCTTCCACGTTCGATTTCGTCAAGCCTAATGTTCCTCGGATTAACTACTTGGGAGCTCATGAGGTTTTGGATAGATTCAGCAAATGCAACTCGACGAAAGAGTACAGTGGGAAGAAAATCGGATGGGTTGACCCGTTTGAAGACCACCCGGGTCAAGTAACAAAGGAGGAGCAGAAATGTGATGTCTTTTCTGGGAAATGGGTCTTTGATAATTCATCATCATACCCTTTACACAAGGAATCTCAGTGTCCTTACATGTCCGACCAGTTGGCTTGTCAGAAGCATGGTAGGAAGGATTTGGAGTATCAGCATTGGAGATGGCAACCTCATGCCTGCAACTTGAAGAGATGGAATGCGATAGAAATGTGGGAGAAGCTGAGAGGAAAGAGATTGATGTTTGTTGGAGACTCGTTAAACAGAGGCCAATGGATTTCAATGGTTTGTCTCTTACAGTCTGTCATTCCACGTGACAAGCAGTCTATGTCTCCTAACGCTCACCTCACCATTTTCAGGGCTGAGGACTACAATGCCACAGTGGAGTTTCTCTGGGCACCGTTGCTCGTGGAGTCGAATTCTGATGACCCTGTTAATCACAGATTGAGCGAGCGGATTATCCGACCCGATTCTGTTCTTAAACATGCATCAAAGTGGCAACATGCTGATATTCTAATCTTCAACACCTACTTATGGTGGAGACAAGACTCTGTCAAGCTCCGATGGAGCAGTGAAGAAAAAGGGTCATGCGAGGAGGTGAAGAGCGCCGAGGGAATGGAGATGGCAATGGATAGTTGGGGTGATTGGGTTGCTAACAATGTCGATCCAAACAAAAAGCGAGTTTTCTTCGTTACAATGTCTCCTACACATCAATGGAGCCGAGAATGGAACCCGGGAAGCGAAGGAAACTGCTACGGGGAGAAGAAACCAATAGAGGAAGAGAGTTATTGGGGAAGTGGGTCGGACATTCCGACAATGAGGATGGTGAAGAGAGTTTTGGAGAGATTGGGACCAAAGGTCTCAGTTATAAACATCACTCAGTTGTCTGAGTATCGAAAAGATGGTCATCCATCGGTGTACCGGAAATTCTGGGAACCTCTAAATGAAGACCGGTTGAAAAACCCGGCATCGTATTCTGACTGTACTCATTGGTGTGTACCTGGAGTTCCTGATGTCTGGAATCAATTGCTTTTCCATTTTTTGTGA

Protein Analysis

449

Amino Acids

52.69

Weight (kDa)

8.41

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 108 - 163 1.5e-22 PMR5 N terminal Domain
PC-Esterase PF13839 165 - 447 3.6e-85 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1172
AccB1I GGYRCC 1 cut(s) 700
AccBSI CCGCTC 1 cut(s) 757
AccI GTMKAC 1 cut(s) 31
AccII CGCG 1 cut(s) 125
AciI CCGC 3 cut(s) 44, 123, 757
AclWI GGATC 2 cut(s) 103, 962
AcsI RAATTY 2 cut(s) 721, 1229
AcvI CACGTG 1 cut(s) 617
AfaI GTAC 4 cut(s) 254, 1223, 1288, 1302
AfiI CCNNNNNNNGG 3 cut(s) 44, 660, 837
AflIII ACRYGT 1 cut(s) 405
AgeI ACCGGT 1 cut(s) 1254
AgsI TTSAA 6 cut(s) 88, 290, 493, 585, 826, 1261
AhdI GACNNNNNGTC 2 cut(s) 625, 1160
AjnI CCWGG 1 cut(s) 1303
AjuI GAANNNNNNNTTGG 2 cut(s) 1124, 1156
AluBI AGCT 3 cut(s) 206, 526, 862
AluI AGCT 3 cut(s) 206, 526, 862
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 7 cut(s) 53, 549, 599, 639, 838, 1008, 1168
AlwI GGATC 2 cut(s) 103, 962
Ama87I CYCGRG 2 cut(s) 298, 1036
AoxI GGCC 1 cut(s) 571
ApoI RAATTY 2 cut(s) 721, 1229
ArsI GACNNNNNNTTYG 2 cut(s) 1192, 1224
AsiGI ACCGGT 1 cut(s) 1254
AspLEI GCGC 1 cut(s) 911
AspS9I GGNCC 1 cut(s) 1154
AsuC2I CCSGG 5 cut(s) 299, 300, 1037, 1038, 1268
AsuHPI GGTGA 7 cut(s) 61, 107, 638, 643, 913, 956, 1141
AvaI CYCGRG 2 cut(s) 298, 1036
AvaII GGWCC 1 cut(s) 1154
BaeGI GKGCMC 1 cut(s) 703
BanI GGYRCC 1 cut(s) 700
BanII GRGCYC 1 cut(s) 208
BauI CACGAG 1 cut(s) 710
BbrPI CACGTG 1 cut(s) 617
BbsI GAAGAC 2 cut(s) 297, 1257
Bbv12I GWGCWC 1 cut(s) 208
BbvCI CCTCAGC 1 cut(s) 666
BciT130I CCWGG 1 cut(s) 1305
BcnI CCSGG 5 cut(s) 299, 300, 1037, 1038, 1268
BcoDI GTCTC 7 cut(s) 53, 549, 599, 639, 838, 1008, 1168
BfoI RGCGCY 1 cut(s) 912
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 6 cut(s) 299, 300, 1037, 1038, 1268, 1305
Bme18I GGWCC 1 cut(s) 1154
BmeRI GACNNNNNGTC 2 cut(s) 625, 1160
BmeT110I CYCGRG 2 cut(s) 298, 1036
BmgT120I GGNCC 1 cut(s) 1154
BmiI GGNNCC 5 cut(s) 702, 1022, 1034, 1155, 1239
BmrFI CCNGG 6 cut(s) 299, 300, 1037, 1038, 1268, 1305
BmsI GCATC 2 cut(s) 800, 1280
BpiI GAAGAC 2 cut(s) 297, 1257
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BpmI CTGGAG 1 cut(s) 1326
Bpu10I CCTNAGC 1 cut(s) 666
BpuMI CCSGG 5 cut(s) 299, 300, 1037, 1038, 1268
BsaAI YACGTR 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 1209
BsaI GGTCTC 2 cut(s) 53, 1168
BsaJI CCNNGG 4 cut(s) 185, 298, 912, 1036
BsaWI WCCGGW 2 cut(s) 1224, 1254
BsaXI ACNNNNNCTCC 2 cut(s) 988, 1018
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 660, 837
Bse118I RCCGGY 1 cut(s) 1254
Bse1I ACTGG 1 cut(s) 415
Bse3DI GCAATG 1 cut(s) 936
Bse8I GATNNNNATC 1 cut(s) 1209
BseBI CCWGG 1 cut(s) 1305
BseDI CCNNGG 4 cut(s) 185, 298, 912, 1036
BseGI GGATG 3 cut(s) 278, 1131, 1210
BseJI GATNNNNATC 1 cut(s) 1209
BseLI CCNNNNNNNGG 3 cut(s) 44, 660, 837
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 6 cut(s) 407, 518, 657, 1179, 1182, 1196
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 3 cut(s) 41, 332, 911
BseSI GKGCMC 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 573
BshNI GGYRCC 1 cut(s) 700
BshTI ACCGGT 1 cut(s) 1254
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 2 cut(s) 298, 1036
BsiSI CCGG 5 cut(s) 299, 1037, 1225, 1255, 1268
BslFI GGGAC 1 cut(s) 1167
BslI CCNNNNNNNGG 3 cut(s) 44, 660, 837
BsmAI GTCTC 7 cut(s) 53, 549, 599, 639, 838, 1008, 1168
BsmFI GGGAC 1 cut(s) 1167
BsmI GAATGC 2 cut(s) 99, 508
BsnI GGCC 1 cut(s) 573
Bso31I GGTCTC 2 cut(s) 53, 1168
BsoBI CYCGRG 2 cut(s) 298, 1036
Bsp1286I GDGCHC 2 cut(s) 208, 703
Bsp143I GATC 2 cut(s) 108, 967
BspACI CCGC 3 cut(s) 44, 123, 757
BspANI GGCC 1 cut(s) 573
BspCNI CTCAG 6 cut(s) 406, 519, 658, 1178, 1183, 1195
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 5 cut(s) 702, 1022, 1034, 1155, 1239
BspPI GGATC 2 cut(s) 103, 962
BspQI GCTCTTC 1 cut(s) 899
BspT107I GGYRCC 1 cut(s) 700
BspTNI GGTCTC 2 cut(s) 53, 1168
BsrBI CCGCTC 1 cut(s) 757
BsrDI GCAATG 1 cut(s) 936
BsrFI RCCGGY 1 cut(s) 1254
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 1254
BssECI CCNNGG 4 cut(s) 185, 298, 912, 1036
BssMI GATC 2 cut(s) 108, 967
BssSI CACGAG 1 cut(s) 710
Bst2BI CACGAG 1 cut(s) 710
Bst2UI CCWGG 1 cut(s) 1305
Bst4CI ACNGT 5 cut(s) 257, 603, 685, 705, 1286
Bst6I CTCTTC 6 cut(s) 20, 89, 488, 899, 1077, 1127
BstBAI YACGTR 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 484, 755
BstDEI CTNAG 6 cut(s) 393, 527, 666, 1165, 1182, 1191
BstF5I GGATG 3 cut(s) 278, 1131, 1210
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 912
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 2 cut(s) 111, 970
BstMAI GTCTC 7 cut(s) 53, 549, 599, 639, 838, 1008, 1168
BstMBI GATC 2 cut(s) 108, 967
BstNI CCWGG 1 cut(s) 1305
BstNSI RCATGY 3 cut(s) 409, 791, 809
BstSCI CCNGG 6 cut(s) 297, 298, 1035, 1036, 1266, 1303
BstSLI GKGCMC 1 cut(s) 703
BstUI CGCG 1 cut(s) 125
BstV2I GAAGAC 2 cut(s) 297, 1257
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 1 cut(s) 573
BtsCI GGATG 3 cut(s) 278, 1131, 1210
BtsI GCAGTG 1 cut(s) 880
BtsIMutI CAGTG 4 cut(s) 262, 401, 690, 880
Cac8I GCNNGC 2 cut(s) 484, 755
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 911
Cfr10I RCCGGY 1 cut(s) 1254
Cfr13I GGNCC 1 cut(s) 1154
Cfr9I CCCGGG 2 cut(s) 298, 1036
Csp6I GTAC 4 cut(s) 253, 1222, 1287, 1301
CspAI ACCGGT 1 cut(s) 1254
CviAII CATG 7 cut(s) 209, 406, 434, 479, 788, 806, 891
CviJI RGCY 8 cut(s) 175, 206, 422, 526, 573, 665, 862, 1023
CviKI_1 RGCY 8 cut(s) 175, 206, 422, 526, 573, 665, 862, 1023
CviQI GTAC 4 cut(s) 253, 1222, 1287, 1301
DdeI CTNAG 6 cut(s) 393, 527, 666, 1165, 1182, 1191
DpnI GATC 2 cut(s) 110, 969
DpnII GATC 2 cut(s) 108, 967
DriI GACNNNNNGTC 2 cut(s) 625, 1160
Eam1104I CTCTTC 6 cut(s) 20, 89, 488, 899, 1077, 1127
Eam1105I GACNNNNNGTC 2 cut(s) 625, 1160
EarI CTCTTC 6 cut(s) 20, 89, 488, 899, 1077, 1127
Ecl136II GAGCTC 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 208
Eco31I GGTCTC 2 cut(s) 53, 1168
Eco47I GGWCC 1 cut(s) 1154
Eco53kI GAGCTC 1 cut(s) 206
Eco72I CACGTG 1 cut(s) 617
Eco88I CYCGRG 2 cut(s) 298, 1036
EcoICRI GAGCTC 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 1 cut(s) 1303
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 7 cut(s) 212, 409, 437, 482, 791, 809, 894
FaqI GGGAC 1 cut(s) 1167
FatI CATG 7 cut(s) 208, 405, 433, 478, 787, 805, 890
FauI CCCGC 1 cut(s) 37
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 3 cut(s) 285, 1138, 1197
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 123
GlaI GCGC 1 cut(s) 910
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 1326
HaeII RGCGCY 1 cut(s) 912
HaeIII GGCC 1 cut(s) 573
HapII CCGG 5 cut(s) 299, 1037, 1225, 1255, 1268
HhaI GCGC 1 cut(s) 911
Hin1II CATG 7 cut(s) 212, 409, 437, 482, 791, 809, 894
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 9 cut(s) 79, 127, 225, 389, 557, 716, 773, 851, 1324
HpaII CCGG 5 cut(s) 299, 1037, 1225, 1255, 1268
HphI GGTGA 7 cut(s) 61, 107, 638, 643, 913, 956, 1141
Hpy166II GTNNAC 4 cut(s) 32, 280, 1222, 1301
Hpy188III TCNNGA 3 cut(s) 209, 1313, 1321
Hpy8I GTNNAC 4 cut(s) 32, 280, 1222, 1301
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 3 cut(s) 162, 436, 1040
HpyCH4III ACNGT 5 cut(s) 257, 603, 685, 705, 1286
HpyCH4IV ACGT 2 cut(s) 158, 616
HpyCH4V TGCA 3 cut(s) 237, 486, 791
HpyF3I CTNAG 6 cut(s) 393, 527, 666, 1165, 1182, 1191
HpySE526I ACGT 2 cut(s) 158, 616
Hsp92II CATG 7 cut(s) 212, 409, 437, 482, 791, 809, 894
HspAI GCGC 1 cut(s) 909
Kzo9I GATC 2 cut(s) 108, 967
LguI GCTCTTC 1 cut(s) 899
LmnI GCTCC 5 cut(s) 203, 319, 867, 870, 1020
LweI GCATC 2 cut(s) 800, 1280
MaeII ACGT 2 cut(s) 158, 616
MaeIII GTNAC 5 cut(s) 67, 128, 307, 617, 994
MalI GATC 2 cut(s) 110, 969
MbiI CCGCTC 1 cut(s) 757
MboI GATC 2 cut(s) 108, 967
MfeI CAATTG 1 cut(s) 1328
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 2 cut(s) 208, 703
MluCI AATT 4 cut(s) 361, 721, 1229, 1328
MlyI GAGTC 4 cut(s) 136, 551, 725, 845
MmeI TCCRAC 5 cut(s) 435, 532, 790, 1086, 1139
Mph1103I ATGCAT 1 cut(s) 793
MseI TTAA 4 cut(s) 192, 563, 738, 783
MslI CAYNNNNRTG 4 cut(s) 74, 796, 1015, 1296
MspI CCGG 5 cut(s) 299, 1037, 1225, 1255, 1268
MspR9I CCNGG 6 cut(s) 299, 300, 1037, 1038, 1268, 1305
MunI CAATTG 1 cut(s) 1328
Mva1269I GAATGC 2 cut(s) 99, 508
MvaI CCWGG 1 cut(s) 1305
MvnI CGCG 1 cut(s) 125
NciI CCSGG 5 cut(s) 299, 300, 1037, 1038, 1268
NdeII GATC 2 cut(s) 108, 967
NlaIII CATG 7 cut(s) 212, 409, 437, 482, 791, 809, 894
NlaIV GGNNCC 5 cut(s) 702, 1022, 1034, 1155, 1239
NmeAIII GCCGAG 2 cut(s) 937, 1049
NmuCI GTSAC 3 cut(s) 67, 128, 617
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 3 cut(s) 409, 791, 809
PagI TCATGA 1 cut(s) 208
PciI ACATGT 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 899
PcsI WCGNNNNNNNCGW 1 cut(s) 1112
PctI GAATGC 2 cut(s) 99, 508
PfeI GAWTC 5 cut(s) 79, 225, 389, 773, 1324
PflFI GACNNNGTC 1 cut(s) 854
PinAI ACCGGT 1 cut(s) 1254
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 4 cut(s) 135, 551, 724, 845
PmaCI CACGTG 1 cut(s) 617
PmlI CACGTG 1 cut(s) 617
PpsI GAGTC 4 cut(s) 135, 551, 724, 845
Ppu21I YACGTR 1 cut(s) 617
PscI ACATGT 1 cut(s) 405
PsiI TTATAA 1 cut(s) 1172
Psp124BI GAGCTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 1303
PspCI CACGTG 1 cut(s) 617
PspGI CCWGG 1 cut(s) 1303
PspN4I GGNNCC 5 cut(s) 702, 1022, 1034, 1155, 1239
PspPI GGNCC 1 cut(s) 1154
PsrI GAACNNNNNNTAC 2 cut(s) 1293, 1325
PsuI RGATCY 1 cut(s) 108
PsyI GACNNNGTC 1 cut(s) 854
RsaI GTAC 4 cut(s) 254, 1223, 1288, 1302
RsaNI GTAC 4 cut(s) 253, 1222, 1287, 1301
RseI CAYNNNNRTG 4 cut(s) 74, 796, 1015, 1296
SacI GAGCTC 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 899
SaqAI TTAA 4 cut(s) 192, 563, 738, 783
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 108, 967
Sau96I GGNCC 1 cut(s) 1154
SchI GAGTC 4 cut(s) 136, 551, 725, 845
ScrFI CCNGG 6 cut(s) 299, 300, 1037, 1038, 1268, 1305
SduI GDGCHC 2 cut(s) 208, 703
SfaNI GCATC 2 cut(s) 800, 1280
SinI GGWCC 1 cut(s) 1154
SmaI CCCGGG 2 cut(s) 300, 1038
SmiMI CAYNNNNRTG 4 cut(s) 74, 796, 1015, 1296
Sse9I AATT 4 cut(s) 361, 721, 1229, 1328
SsiI CCGC 3 cut(s) 44, 123, 757
SstI GAGCTC 1 cut(s) 208
StyD4I CCNGG 6 cut(s) 297, 298, 1035, 1036, 1266, 1303
TaaI ACNGT 5 cut(s) 257, 603, 685, 705, 1286
TaiI ACGT 2 cut(s) 161, 619
TaqI TCGA 5 cut(s) 162, 242, 719, 966, 1198
TasI AATT 4 cut(s) 361, 721, 1229, 1328
TatI WGTACW 2 cut(s) 252, 1286
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 5 cut(s) 79, 225, 389, 773, 1324
Tru1I TTAA 4 cut(s) 192, 563, 738, 783
Tru9I TTAA 4 cut(s) 192, 563, 738, 783
TscAI CASTG 4 cut(s) 262, 401, 690, 880
TseFI GTSAC 3 cut(s) 67, 128, 617
Tsp45I GTSAC 3 cut(s) 67, 128, 617
TspDTI ATGAA 2 cut(s) 354, 1263
TspMI CCCGGG 2 cut(s) 298, 1036
TspRI CASTG 4 cut(s) 262, 401, 690, 880
Tth111I GACNNNGTC 1 cut(s) 854
VpaK11BI GGWCC 1 cut(s) 1154
XapI RAATTY 2 cut(s) 721, 1229
XceI RCATGY 3 cut(s) 409, 791, 809
XmaI CCCGGG 2 cut(s) 298, 1036
XmiI GTMKAC 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.