Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009175

Physical Location & Seq

Genomic Coordinates Forward (+)

39544599 .. 39548352

Gene Structure 3754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAATTGGCCATGGGGGCTTGGGCAGACTGGGCTTCTAAAGTTGATCCCCTCAAGAAGCGGGTCTTCTTTGTCACAATGTCTCCTACACATCTCTGGAGTCAAGAGTGGAAGCCAGGAAATGAAGGTAATTGTTACAATGAGAAATCCCCCATTGAGTTGGAGGGCTACTGGGGAAGTGGCTCTGATCTCCCTACTATGAGCATGGTGGACAATGTCCTCAGTAAGTTGAGTTCAAAGGTTTCAGTTCTCAACATTACTCAACTGTCAGAGTACCGGAAAGATGGTCATCCTTCCATTTACCGGAAATTTTGGGAGGCACTAAAGCCTGAACAGTTGTCTAACCCAGCGAGTTACTCTGATTGCATACACTGGTGCTTGCCTGGTGTACCTGATGTTTGGAACGAGTTGCTATACCATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

142

Amino Acids

16.31

Weight (kDa)

5.51

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	2 - 140	3.8e-42	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01620 AT5G01620 AT5G01620
fragaria_vesca	FvH4_6g10720 FvH4_6g10720 FvH4_6g10720 FvH4_6g10720
malus_domestica	MD04G1165100.v1.1 MD12G1179100.v1.1
prunus_persica	Prupe.6G284200_v2.0.a1
pyrus_communis	pycom04g14720 pycom12g16900
rosa_chinensis	RchiOBHm_Chr3g0461751
rosa_laevigata	RLG00000024903
rosa_multiflora	Rmu_sc0000619.1_g000010
rosa_roxburghii	Rroxscaffold_6G00417990
rosa_rugosa	Rorug03G0053200
rosa_samantha	Rh3AG111400 Rh3BG114400 Rh3CG116700 Rh3DG116400
rosa_wichuraiana	Rw3G009430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	2 cut(s)	275, 390
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	237
AjnI	CCWGG	2 cut(s)	115, 382
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	58
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	117, 384
BcoDI	GTCTC	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	117, 384
BmrFI	CCNGG	2 cut(s)	117, 384
BmrI	ACTGGG	2 cut(s)	40, 181
BmuI	ACTGGG	2 cut(s)	40, 181
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	2 cut(s)	276, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	3 cut(s)	35, 176, 377
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	117, 384
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	235
BseNI	ACTGG	3 cut(s)	35, 176, 377
BseYI	CCCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	277, 304
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	46, 187
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	234
BspPI	GGATC	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	35, 176, 377
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	46, 187
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	117, 384
Bst4CI	ACNGT	2 cut(s)	267, 336
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	49, 190
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	2 cut(s)	46, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 32
BstNI	CCWGG	2 cut(s)	117, 384
BstSCI	CCNGG	2 cut(s)	115, 382
BstV2I	GAAGAC	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	274, 389
CviAII	CATG	2 cut(s)	13, 205
CviJI	RGCY	7 cut(s)	11, 20, 35, 115, 168, 183, 328
CviKI_1	RGCY	7 cut(s)	11, 20, 35, 115, 168, 183, 328
CviQI	GTAC	2 cut(s)	274, 389
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	2 cut(s)	48, 189
DpnII	GATC	2 cut(s)	46, 187
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	115, 382
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	16, 208
FaiI	YATR	5 cut(s)	14, 200, 206, 368, 415
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FatI	CATG	2 cut(s)	12, 204
FauI	CCCGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	277, 304
Hin1II	CATG	2 cut(s)	16, 208
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	277, 304
Hpy166II	GTNNAC	2 cut(s)	211, 389
Hpy188I	TCNGA	3 cut(s)	187, 271, 361
Hpy188III	TCNNGA	3 cut(s)	55, 97, 104
Hpy8I	GTNNAC	2 cut(s)	211, 389
HpyAV	CCTTC	2 cut(s)	119, 303
HpyCH4III	ACNGT	2 cut(s)	267, 336
HpyCH4V	TGCA	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 32
HpyF3I	CTNAG	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	16, 208
Kzo9I	GATC	2 cut(s)	46, 187
MaeIII	GTNAC	3 cut(s)	73, 134, 353
MalI	GATC	2 cut(s)	48, 189
MboI	GATC	2 cut(s)	46, 187
MboII	GAAGA	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	3 cut(s)	5, 130, 308
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	62, 157, 230, 310
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	2 cut(s)	277, 304
MspR9I	CCNGG	2 cut(s)	117, 384
MvaI	CCWGG	2 cut(s)	117, 384
MwoI	GCNNNNNNNGC	2 cut(s)	17, 32
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	46, 187
NlaIII	CATG	2 cut(s)	16, 208
NmuCI	GTSAC	1 cut(s)	73
PflFI	GACNNNGTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	115, 382
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	2 cut(s)	115, 382
PsrI	GAACNNNNNNTAC	2 cut(s)	217, 249
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	2 cut(s)	275, 390
RsaNI	GTAC	2 cut(s)	274, 389
Sau3AI	GATC	2 cut(s)	46, 187
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	117, 384
SetI	ASST	3 cut(s)	130, 243, 394
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	5, 130, 308
SsiI	CCGC	1 cut(s)	61
StyD4I	CCNGG	2 cut(s)	115, 382
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	267, 336
TasI	AATT	3 cut(s)	5, 130, 308
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	377
Tth111I	GACNNNGTC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.