Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009175

Physical Location & Seq

Genomic Coordinates Forward (+)

26404342 .. 26407588

Gene Structure 3247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G284200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGCAGAGGTGGAACAGAAAGAAAACCCAGTTTCCTGTATTGGTGTTCCTCTTATTTTTGTTCATAGTGTTCTCAAATCTCCACAGTGAAAATAGCATTCTGCAAATTCAAGATGGCCATGATCGTGCTCCTCGCCATCAAGATTCAATCACTTATGTAAAGCCAAATCTTTTCAGCCGTCAAAACCATGGTCCAGAGATTTTGGATAGATTCAGTACATGCAACTCCACCAAAGAGTACAGTGGTCGGAAAATTGCGTGGACTGACCGTAAGCCGAGGTACGGTCACCGGAGAGAGACTTTGGAGAGCTGTGACGTGTTCTCAGGCAAATGGGTGTTTGATAATAATTCCTATCCGCTGTACAAGGAATCGGACTGCCCATACATGTCTGACCAGTTGGCTTGTCACAAGCATGGCAGGTCTGATTTGGGCTACCAGTATTGGAGGTGGCAACCTCACAACTGCAACTTGAAGAGATGGAATGCAACTGAAATGTGGGAGAAGTTGAGAGACAAAAGACTAATGTTTGTAGGGGATTCATTGAACAGAGGGCAATGGATATCAATGGTGTGTTTGTTACAATCTGTGATTCCCGCAGATAAGAGATCCATGTCGCCGAATGCTGCTCTTACCATTTTTAAAGCAGAGGAATATAATGCCACTGTGGAATTTCTCTGGGCACCGCTTCTTGTAGAATCTAATTCTGATGACCCAGTGAATCACAGATTGGATGATCGGATAATCCGTCCAGATTCTGTTCTTAAGCATGCATCAGAATGGGAAAATGCTGATATATTGATTTTCAATACCTACCTGTGGTGGCGACAAGGCCCAGTTAAGCTGTTATGGAGCGCTGAAGCAAACGGTGCTTGTGAAGAGTTAGACAGTCTTGGAGCCATGGAGTTGGCCATGGGTGCTTGGGCAGATTGGGCTTCTAAGGTCAATCCCCTCAAGAAGCGGGTCTTCTTTGTTACAATGTCTCCTACACATCTCTGGAGTCGAGAGTGGAAGCCAGAAAGTGAAGGTAATTGTTATAGCGAGACATCCCCCATTGATTTGGAGGGCTACTGGGGAAGTGGTTCTGACCTGCCTACGATGCACATGGTGGAGAAAGTCCTCAGCAAGTTGAGTTCAAAGGTTTCCGTTCTCAATATTACTCAGTTATCGGAGTACCGGAAAGATGGTCACCCTTCCATTTACCGCAAATTCTGGGAGGCGCTGAAGCCTGAACAATTGTCAAATCCTGCGAGTTACTCGGATTGCATACACTGGTGCTTGCCTGGTCTACCTGATGTATGGAACGAGTTTTTATTCCATTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

442

Amino Acids

51.59

Weight (kDa)

6.74

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01620 AT5G01620 AT5G01620
fragaria_vesca	FvH4_6g10720 FvH4_6g10720 FvH4_6g10720 FvH4_6g10720
malus_domestica	MD04G1165100.v1.1 MD12G1179100.v1.1
prunus_persica	Prupe.6G284200_v2.0.a1
pyrus_communis	pycom04g14720 pycom12g16900
rosa_chinensis	RchiOBHm_Chr3g0461751
rosa_laevigata	RLG00000024903
rosa_multiflora	Rmu_sc0000619.1_g000010
rosa_roxburghii	Rroxscaffold_6G00417990
rosa_rugosa	Rorug03G0053200
rosa_samantha	Rh3AG111400 Rh3BG114400 Rh3CG116700 Rh3DG116400
rosa_wichuraiana	Rw3G009430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	408, 1095
AccB1I	GGYRCC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	1285
AciI	CCGC	5 cut(s)	356, 594, 683, 958, 1201
AclWI	GGATC	1 cut(s)	600
AcoI	YGGCCR	2 cut(s)	115, 906
AcsI	RAATTY	3 cut(s)	105, 668, 1205
AcuI	CTGAAG	2 cut(s)	876, 1241
AdeI	CACNNNGTG	1 cut(s)	1105
AfaI	GTAC	5 cut(s)	217, 239, 281, 362, 1172
AfeI	AGCGCT	1 cut(s)	853
AfiI	CCNNNNNNNGG	2 cut(s)	281, 816
AflII	CTTAAG	1 cut(s)	761
AflIII	ACRYGT	2 cut(s)	315, 384
AgsI	TTSAA	6 cut(s)	110, 147, 472, 544, 805, 1134
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	1279
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AluBI	AGCT	2 cut(s)	309, 841
AluI	AGCT	2 cut(s)	309, 841
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	4 cut(s)	290, 504, 984, 1034
AlwI	GGATC	1 cut(s)	600
AlwNI	CAGNNNCTG	1 cut(s)	755
Aor51HI	AGCGCT	1 cut(s)	853
AoxI	GGCC	3 cut(s)	115, 829, 906
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	3 cut(s)	105, 668, 1205
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp700I	GAANNNNTTC	1 cut(s)	1078
AspLEI	GCGC	2 cut(s)	854, 1219
AspS9I	GGNCC	2 cut(s)	191, 830
AsuHPI	GGTGA	2 cut(s)	278, 1178
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	682
BalI	TGGCCA	2 cut(s)	117, 908
BanI	GGYRCC	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	955
Bbv12I	GWGCWC	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	1118
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	4 cut(s)	107, 144, 471, 1175
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	1281
BcoDI	GTCTC	4 cut(s)	290, 504, 984, 1034
BfoI	RGCGCY	2 cut(s)	855, 1220
BfrI	CTTAAG	1 cut(s)	761
BfuAI	ACCTGC	2 cut(s)	408, 1095
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	1 cut(s)	1281
Bme18I	GGWCC	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	191, 830
BmiI	GGNNCC	2 cut(s)	681, 895
BmrFI	CCNGG	1 cut(s)	1281
BmrI	ACTGGG	4 cut(s)	22, 707, 827, 1078
BmsI	GCATC	2 cut(s)	779, 1086
BmuI	ACTGGG	4 cut(s)	22, 707, 827, 1078
BpiI	GAAGAC	1 cut(s)	955
BpmI	CTGGAG	1 cut(s)	1015
Bpu10I	CCTNAGC	1 cut(s)	1118
BpuEI	CTTGAG	1 cut(s)	935
BsaJI	CCNNGG	4 cut(s)	187, 275, 897, 909
BsaWI	WCCGGW	2 cut(s)	288, 1173
BsaXI	ACNNNNNCTCC	2 cut(s)	964, 994
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 816
Bse1I	ACTGG	7 cut(s)	28, 394, 436, 713, 833, 1073, 1274
Bse3DI	GCAATG	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	1281
BseDI	CCNNGG	4 cut(s)	187, 275, 897, 909
BseGI	GGATG	2 cut(s)	736, 1043
BseLI	CCNNNNNNNGG	2 cut(s)	281, 816
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	3 cut(s)	336, 1132, 1172
BseNI	ACTGG	7 cut(s)	28, 394, 436, 713, 833, 1073, 1274
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	682
BseXI	GCAGC	1 cut(s)	610
BshFI	GGCC	3 cut(s)	117, 831, 908
BshNI	GGYRCC	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	289, 1174
BslI	CCNNNNNNNGG	2 cut(s)	281, 816
BsmAI	GTCTC	4 cut(s)	290, 504, 984, 1034
BsmI	GAATGC	3 cut(s)	96, 487, 625
BsnI	GGCC	3 cut(s)	117, 831, 908
Bsp1286I	GDGCHC	2 cut(s)	130, 682
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	121, 605, 733
Bsp19I	CCATGG	3 cut(s)	187, 897, 909
BspACI	CCGC	5 cut(s)	356, 594, 683, 958, 1201
BspANI	GGCC	3 cut(s)	117, 831, 908
BspCNI	CTCAG	3 cut(s)	335, 1131, 1171
BspLI	GGNNCC	2 cut(s)	681, 895
BspMI	ACCTGC	2 cut(s)	408, 1095
BspPI	GGATC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	679
BspTI	CTTAAG	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	7 cut(s)	28, 394, 436, 713, 833, 1073, 1274
BssECI	CCNNGG	4 cut(s)	187, 275, 897, 909
BssMI	GATC	3 cut(s)	121, 605, 733
BssT1I	CCWWGG	3 cut(s)	187, 897, 909
Bst2UI	CCWGG	1 cut(s)	1281
Bst4CI	ACNGT	7 cut(s)	86, 242, 269, 284, 664, 866, 887
Bst6I	CTCTTC	2 cut(s)	467, 870
BstAFI	CTTAAG	1 cut(s)	761
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	768, 1277
BstDEI	CTNAG	4 cut(s)	322, 936, 1118, 1158
BstDSI	CCRYGG	3 cut(s)	187, 897, 909
BstEII	GGTNACC	2 cut(s)	284, 1184
BstF5I	GGATG	2 cut(s)	736, 1043
BstH2I	RGCGCY	2 cut(s)	855, 1220
BstHHI	GCGC	2 cut(s)	854, 1219
BstKTI	GATC	3 cut(s)	124, 608, 736
BstMAI	GTCTC	4 cut(s)	290, 504, 984, 1034
BstMBI	GATC	3 cut(s)	121, 605, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	866, 914, 929, 1096
BstNI	CCWGG	1 cut(s)	1281
BstNSI	RCATGY	3 cut(s)	222, 388, 770
BstPI	GGTNACC	2 cut(s)	284, 1184
BstSCI	CCNGG	1 cut(s)	1279
BstSLI	GKGCMC	1 cut(s)	682
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	955
BstX2I	RGATCY	1 cut(s)	605
BstXI	CCANNNNNNTGG	2 cut(s)	904, 1057
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	3 cut(s)	117, 831, 908
BtgI	CCRYGG	3 cut(s)	187, 897, 909
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	736, 1043
BtsIMutI	CAGTG	5 cut(s)	91, 247, 660, 720, 1267
BveI	ACCTGC	2 cut(s)	408, 1095
Cac8I	GCNNGC	2 cut(s)	768, 1277
CaiI	CAGNNNCTG	1 cut(s)	755
CfoI	GCGC	2 cut(s)	854, 1219
Cfr13I	GGNCC	2 cut(s)	191, 830
Csp6I	GTAC	5 cut(s)	216, 238, 280, 361, 1171
CviQI	GTAC	5 cut(s)	216, 238, 280, 361, 1171
DdeI	CTNAG	4 cut(s)	322, 936, 1118, 1158
DpnI	GATC	3 cut(s)	123, 607, 735
DpnII	GATC	3 cut(s)	121, 605, 733
DraI	TTTAAA	1 cut(s)	640
DraIII	CACNNNGTG	1 cut(s)	1105
EaeI	YGGCCR	2 cut(s)	115, 906
Eam1104I	CTCTTC	2 cut(s)	467, 870
EarI	CTCTTC	2 cut(s)	467, 870
Eco130I	CCWWGG	3 cut(s)	187, 897, 909
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	853
Eco57I	CTGAAG	2 cut(s)	876, 1241
Eco91I	GGTNACC	2 cut(s)	284, 1184
EcoO65I	GGTNACC	2 cut(s)	284, 1184
EcoRII	CCWGG	1 cut(s)	1279
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	3 cut(s)	187, 897, 909
EcoT22I	ATGCAT	1 cut(s)	772
ErhI	CCWWGG	3 cut(s)	187, 897, 909
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FauI	CCCGC	2 cut(s)	601, 951
FblI	GTMKAC	1 cut(s)	1285
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	2 cut(s)	743, 1030
Fsp4HI	GCNGC	1 cut(s)	624
GlaI	GCGC	2 cut(s)	853, 1218
GluI	GCNGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	1015
HaeII	RGCGCY	2 cut(s)	855, 1220
HaeIII	GGCC	3 cut(s)	117, 831, 908
HapII	CCGG	2 cut(s)	289, 1174
HhaI	GCGC	2 cut(s)	854, 1219
Hin6I	GCGC	2 cut(s)	852, 1217
HinP1I	GCGC	2 cut(s)	852, 1217
HinfI	GANTC	9 cut(s)	143, 210, 368, 536, 589, 695, 718, 752, 997
HpaII	CCGG	2 cut(s)	289, 1174
HphI	GGTGA	2 cut(s)	278, 1178
Hpy166II	GTNNAC	2 cut(s)	261, 1286
Hpy188III	TCNNGA	7 cut(s)	110, 140, 194, 749, 952, 994, 1001
Hpy8I	GTNNAC	2 cut(s)	261, 1286
HpyAV	CCTTC	2 cut(s)	1016, 1200
HpyCH4III	ACNGT	7 cut(s)	86, 242, 269, 284, 664, 866, 887
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	8 cut(s)	4, 103, 222, 465, 485, 770, 1099, 1263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	866, 914, 929, 1096
HpyF3I	CTNAG	4 cut(s)	322, 936, 1118, 1158
HpySE526I	ACGT	1 cut(s)	315
HspAI	GCGC	2 cut(s)	852, 1217
Kzo9I	GATC	3 cut(s)	121, 605, 733
LmnI	GCTCC	3 cut(s)	133, 849, 893
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	2 cut(s)	779, 1086
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	7 cut(s)	284, 311, 404, 576, 970, 1184, 1250
MalI	GATC	3 cut(s)	123, 607, 735
MboI	GATC	3 cut(s)	121, 605, 733
MboII	GAAGA	3 cut(s)	484, 887, 955
MfeI	CAATTG	1 cut(s)	1232
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	2 cut(s)	130, 682
MlsI	TGGCCA	2 cut(s)	117, 908
MluCI	AATT	8 cut(s)	105, 252, 346, 668, 700, 1027, 1205, 1232
MluNI	TGGCCA	2 cut(s)	117, 908
MlyI	GAGTC	1 cut(s)	1006
MmeI	TCCRAC	1 cut(s)	227
Mox20I	TGGCCA	2 cut(s)	117, 908
Mph1103I	ATGCAT	1 cut(s)	772
MroXI	GAANNNNTTC	1 cut(s)	1078
MscI	TGGCCA	2 cut(s)	117, 908
MseI	TTAA	3 cut(s)	639, 762, 837
MslI	CAYNNNNRTG	3 cut(s)	123, 411, 775
Msp20I	TGGCCA	2 cut(s)	117, 908
MspA1I	CMGCKG	1 cut(s)	358
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	2 cut(s)	289, 1174
MspR9I	CCNGG	1 cut(s)	1281
MunI	CAATTG	1 cut(s)	1232
Mva1269I	GAATGC	3 cut(s)	96, 487, 625
MvaI	CCWGG	1 cut(s)	1281
MwoI	GCNNNNNNNGC	4 cut(s)	866, 914, 929, 1096
NcoI	CCATGG	3 cut(s)	187, 897, 909
NdeII	GATC	3 cut(s)	121, 605, 733
NlaIV	GGNNCC	2 cut(s)	681, 895
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	4 cut(s)	284, 311, 404, 1184
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	3 cut(s)	222, 388, 770
PaeI	GCATGC	1 cut(s)	770
PciI	ACATGT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	742
PctI	GAATGC	3 cut(s)	96, 487, 625
PdmI	GAANNNNTTC	1 cut(s)	1078
PfeI	GAWTC	8 cut(s)	143, 210, 368, 536, 589, 695, 718, 752
PkrI	GCNGC	1 cut(s)	625
PleI	GAGTC	1 cut(s)	1005
PpsI	GAGTC	1 cut(s)	1005
PscI	ACATGT	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	1279
PspEI	GGTNACC	2 cut(s)	284, 1184
PspGI	CCWGG	1 cut(s)	1279
PspN4I	GGNNCC	2 cut(s)	681, 895
PspPI	GGNCC	2 cut(s)	191, 830
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	605
RsaI	GTAC	5 cut(s)	217, 239, 281, 362, 1172
RsaNI	GTAC	5 cut(s)	216, 238, 280, 361, 1171
RseI	CAYNNNNRTG	3 cut(s)	123, 411, 775
SaqAI	TTAA	3 cut(s)	639, 762, 837
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	3 cut(s)	121, 605, 733
Sau96I	GGNCC	2 cut(s)	191, 830
SchI	GAGTC	1 cut(s)	1006
ScrFI	CCNGG	1 cut(s)	1281
SduI	GDGCHC	2 cut(s)	130, 682
SfaNI	GCATC	2 cut(s)	779, 1086
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	123, 411, 775
SmlI	CTYRAG	2 cut(s)	761, 950
SmoI	CTYRAG	2 cut(s)	761, 950
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	8 cut(s)	105, 252, 346, 668, 700, 1027, 1205, 1232
SsiI	CCGC	5 cut(s)	356, 594, 683, 958, 1201
SspI	AATATT	1 cut(s)	1153
StyD4I	CCNGG	1 cut(s)	1279
StyI	CCWWGG	3 cut(s)	187, 897, 909
TaaI	ACNGT	7 cut(s)	86, 242, 269, 284, 664, 866, 887
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	1000
TasI	AATT	8 cut(s)	105, 252, 346, 668, 700, 1027, 1205, 1232
TatI	WGTACW	3 cut(s)	215, 237, 360
TfiI	GAWTC	8 cut(s)	143, 210, 368, 536, 589, 695, 718, 752
Tru1I	TTAA	3 cut(s)	639, 762, 837
Tru9I	TTAA	3 cut(s)	639, 762, 837
TscAI	CASTG	5 cut(s)	91, 247, 667, 720, 1274
TseFI	GTSAC	4 cut(s)	284, 311, 404, 1184
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	4 cut(s)	284, 311, 404, 1184
TspDTI	ATGAA	2 cut(s)	52, 528
TspGWI	ACGGA	2 cut(s)	734, 1132
TspRI	CASTG	5 cut(s)	91, 247, 667, 720, 1274
Vha464I	CTTAAG	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	3 cut(s)	105, 668, 1205
XceI	RCATGY	3 cut(s)	222, 388, 770
XmiI	GTMKAC	1 cut(s)	1285
XmnI	GAANNNNTTC	1 cut(s)	1078
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.