MD12G1179100.v1.1

Protein trichome birefringence-like 35

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
25953281 .. 25956702
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1179100.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGCAGCAGTGGCAGAGGTGGAAGTGGAACAAGAAGAAAACCCATGTTCCTGCGCTGGTGTTCTTCTTCTTTCTGTTCATAGTTTTCTCGAATCTCCACAGCCAACGCAGAATTCTGCAAATTCAAGAGAGCCCTGATCGCGTTTATCACCGTCAAGATTCAGTCACTTTTGTAAAGCCAAATCTTTTCACCCAGCAAAACCATGCTCCAGAGGTTTTGGATAGATTCAGTACATGCAACTCCACCAGAGAGTACAGTGGCCAGAAAATTCTGTGGACTGACCGGACGCCGGAGTACGGTCACCGGAGAGAGAGTTTGGAGAGGTGTGATGTGTTTTCCGGCAAATGGGTGTTTGATAATGCGTCGTATCCGCTGTACAAGGAGTCGGAGTGCCCTTACATGTCGGACCAGTTGGCCTGTCACAAGCATGGGAGGCCTGATTTGGGGTACCAGTACTGGAGATGGCAACCCCACAATTGCAACTTGAAGAGATGGAATGTGACTGAAATGTGGGAGAAGTTGAGAGGCAAAAGGCTAATGTTTGTAGGGGATTCATTAAACCGAGGGCAATGGATATCAATGGTCTGTTTGTTACAATCTGTGATTCCTTCAGATAGGAGATCAATGTCACCGAACGCTGAACTTACTATTTTCAAAGCAGAGGAATATAATGCAACAGTGGAATTTCTCTGGGCTCCGCTTCTTGTAGAATCTAATTCTGATGATCCGGTGAATCACCGAACATCCGATCGGATAATCCGACCAGATTCAGTTCTTAAGCATGCATCAATATGGGAGAATGCTGATATATTGATATTCAATTCCTACCTGTGGTGGAGACAAGGCCCGGTTAAGCTGCTATGGAGCGCGGAAGCAAACGGTGTTTGTGAAGAAGTAGACGGCCTTGGAGCCATGGAGTTGGCCATGGGGGCTTGGGCAGACTGGGCTTCTAAGGTCAATCCCCTCAAGAAGCAGGTCTTCTTCGTCACAATGTCTCCTACACATCTCTGGAGTCGAGAATGGAAACAAGAAAGTGAAGGTAATTGTTACAGTGAGAAATCCCCCATTGACTTGGAGGGCTACTGGGGAAGTGGTTCTGACCTGCCTACCATGAGCATGGTGGAGACGGTCCTCAGCAAGTTGAGTTCCAAGGTTTCTGTCATCAACATTACGCAATTATCGGAGTACCGGAAAGATGGTCACCCTTCCATTTACCGCAAATTCTGGGAGCCACTGAAGCCAGAACAATTGTCTAAGCCCACAAGTTACTCGGATTGCATACACTGGTGCTTGCCTGGTGTACCTGACGTATGGAACGAGTTGCTATTCCAATTCTTGTAA

Protein Analysis

447

Amino Acids

52.46

Weight (kDa)

7.19

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 107 - 161 3.5e-24 PMR5 N terminal Domain
PC-Esterase PF13839 163 - 444 2e-81 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 964, 1110
Acc65I GGTACC 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 447
AccI GTMKAC 1 cut(s) 897
AccII CGCG 2 cut(s) 141, 869
AciI CCGC 4 cut(s) 371, 698, 869, 1216
AclWI GGATC 1 cut(s) 719
AcoI YGGCCR 2 cut(s) 259, 921
AcsI RAATTY 5 cut(s) 111, 120, 267, 683, 1220
AcuI CTGAAG 2 cut(s) 594, 1256
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 8 cut(s) 232, 254, 296, 377, 449, 455, 1187, 1302
AfiI CCNNNNNNNGG 5 cut(s) 289, 296, 345, 443, 831
AflII CTTAAG 1 cut(s) 776
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 4 cut(s) 125, 487, 655, 820
AjnI CCWGG 1 cut(s) 1294
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 1 cut(s) 856
AluI AGCT 1 cut(s) 856
Alw26I GTCTC 3 cut(s) 832, 999, 1118
AlwI GGATC 1 cut(s) 719
AoxI GGCC 6 cut(s) 259, 414, 434, 844, 901, 921
ApeKI GCWGC 2 cut(s) 4, 856
ApoI RAATTY 5 cut(s) 111, 120, 267, 683, 1220
Asp700I GAANNNNTTC 1 cut(s) 1093
Asp718I GGTACC 1 cut(s) 447
AspLEI GCGC 2 cut(s) 55, 869
AspS9I GGNCC 3 cut(s) 406, 845, 1129
AsuC2I CCSGG 1 cut(s) 848
AsuHPI GGTGA 7 cut(s) 140, 181, 293, 621, 728, 742, 1193
AvaII GGWCC 2 cut(s) 406, 1129
BaeGI GKGCMC 1 cut(s) 395
BalI TGGCCA 2 cut(s) 261, 923
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 2 cut(s) 134, 697
BbsI GAAGAC 1 cut(s) 970
BbvCI CCTCAGC 1 cut(s) 1133
BbvI GCAGC 2 cut(s) 16, 843
BccI CCATC 3 cut(s) 456, 486, 1190
BceAI ACGGC 1 cut(s) 916
BciT130I CCWGG 1 cut(s) 1296
BciVI GTATCC 1 cut(s) 378
BcnI CCSGG 1 cut(s) 848
BcoDI GTCTC 3 cut(s) 832, 999, 1118
BfrI CTTAAG 1 cut(s) 776
BfuAI ACCTGC 2 cut(s) 964, 1110
BfuI GTATCC 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 929
BisI GCNGC 2 cut(s) 5, 857
BlsI GCNGC 2 cut(s) 6, 858
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 2 cut(s) 848, 1296
Bme18I GGWCC 2 cut(s) 406, 1129
BmgT120I GGNCC 3 cut(s) 406, 845, 1129
BmiI GGNNCC 4 cut(s) 449, 696, 910, 1230
BmrFI CCNGG 2 cut(s) 848, 1296
BmrI ACTGGG 2 cut(s) 952, 1093
BmsI GCATC 1 cut(s) 794
BmuI ACTGGG 2 cut(s) 952, 1093
BpiI GAAGAC 1 cut(s) 970
BpmI CTGGAG 3 cut(s) 192, 478, 1030
Bpu10I CCTNAGC 1 cut(s) 1133
BpuEI CTTGAG 1 cut(s) 950
BpuMI CCSGG 1 cut(s) 848
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 5 cut(s) 562, 904, 912, 924, 1149
BsaWI WCCGGW 4 cut(s) 282, 303, 727, 1188
BsaXI ACNNNNNCTCC 6 cut(s) 298, 328, 374, 404, 979, 1009
Bsc4I CCNNNNNNNGG 5 cut(s) 289, 296, 345, 443, 831
Bse1I ACTGG 6 cut(s) 409, 451, 461, 947, 1088, 1289
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 1296
BseDI CCNNGG 5 cut(s) 562, 904, 912, 924, 1149
BseGI GGATG 1 cut(s) 743
BseLI CCNNNNNNNGG 5 cut(s) 289, 296, 345, 443, 831
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 1147
BseNI ACTGG 6 cut(s) 409, 451, 461, 947, 1088, 1289
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 2 cut(s) 16, 843
BseYI CCCAGC 1 cut(s) 192
Bsh1236I CGCG 2 cut(s) 141, 869
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 6 cut(s) 261, 416, 436, 846, 903, 923
BshNI GGYRCC 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 751
BsiSI CCGG 7 cut(s) 283, 290, 304, 339, 728, 848, 1189
BslI CCNNNNNNNGG 5 cut(s) 289, 296, 345, 443, 831
BsmAI GTCTC 3 cut(s) 832, 999, 1118
BsmBI CGTCTC 1 cut(s) 1118
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 6 cut(s) 261, 416, 436, 846, 903, 923
Bsp1286I GDGCHC 3 cut(s) 134, 395, 697
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 4 cut(s) 136, 620, 724, 748
Bsp19I CCATGG 2 cut(s) 912, 924
BspACI CCGC 4 cut(s) 371, 698, 869, 1216
BspANI GGCC 6 cut(s) 261, 416, 436, 846, 903, 923
BspCNI CTCAG 1 cut(s) 1146
BspFNI CGCG 2 cut(s) 141, 869
BspLI GGNNCC 4 cut(s) 449, 696, 910, 1230
BspMI ACCTGC 2 cut(s) 964, 1110
BspPI GGATC 1 cut(s) 719
BspT107I GGYRCC 1 cut(s) 447
BspTI CTTAAG 1 cut(s) 776
BsrDI GCAATG 1 cut(s) 575
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 6 cut(s) 409, 451, 461, 947, 1088, 1289
BssECI CCNNGG 5 cut(s) 562, 904, 912, 924, 1149
BssMI GATC 4 cut(s) 136, 620, 724, 748
BssNI GRCGYC 1 cut(s) 287
BssT1I CCWWGG 4 cut(s) 904, 912, 924, 1149
Bst2UI CCWGG 1 cut(s) 1296
Bst4CI ACNGT 7 cut(s) 152, 257, 299, 679, 881, 1052, 1129
Bst6I CTCTTC 1 cut(s) 482
BstACI GRCGYC 1 cut(s) 287
BstAFI CTTAAG 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 783, 1292
BstDEI CTNAG 3 cut(s) 951, 1133, 1254
BstDSI CCRYGG 2 cut(s) 912, 924
BstEII GGTNACC 2 cut(s) 299, 1199
BstF5I GGATG 1 cut(s) 743
BstFNI CGCG 2 cut(s) 141, 869
BstHHI GCGC 2 cut(s) 55, 869
BstKTI GATC 4 cut(s) 139, 623, 727, 751
BstMAI GTCTC 3 cut(s) 832, 999, 1118
BstMBI GATC 4 cut(s) 136, 620, 724, 748
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 6 cut(s) 10, 138, 433, 929, 944, 1237
BstNI CCWGG 1 cut(s) 1296
BstNSI RCATGY 3 cut(s) 237, 403, 785
BstPI GGTNACC 2 cut(s) 299, 1199
BstSCI CCNGG 2 cut(s) 846, 1294
BstSLI GKGCMC 1 cut(s) 395
BstUI CGCG 2 cut(s) 141, 869
BstV1I GCAGC 2 cut(s) 16, 843
BstV2I GAAGAC 1 cut(s) 970
BstXI CCANNNNNNTGG 3 cut(s) 919, 1072, 1117
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 6 cut(s) 261, 416, 436, 846, 903, 923
BtgI CCRYGG 2 cut(s) 912, 924
BtsCI GGATG 1 cut(s) 743
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 6 cut(s) 14, 262, 684, 1057, 1232, 1282
BveI ACCTGC 2 cut(s) 964, 1110
Cac8I GCNNGC 2 cut(s) 783, 1292
CfoI GCGC 2 cut(s) 55, 869
Cfr13I GGNCC 3 cut(s) 406, 845, 1129
CseI GACGC 2 cut(s) 295, 351
Csp6I GTAC 8 cut(s) 231, 253, 295, 376, 448, 454, 1186, 1301
CviQI GTAC 8 cut(s) 231, 253, 295, 376, 448, 454, 1186, 1301
DdeI CTNAG 3 cut(s) 951, 1133, 1254
DpnI GATC 4 cut(s) 138, 622, 726, 750
DpnII GATC 4 cut(s) 136, 620, 724, 748
EaeI YGGCCR 2 cut(s) 259, 921
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco130I CCWWGG 4 cut(s) 904, 912, 924, 1149
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 134, 697
Eco32I GATATC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 406, 1129
Eco57I CTGAAG 2 cut(s) 594, 1256
Eco91I GGTNACC 2 cut(s) 299, 1199
EcoO65I GGTNACC 2 cut(s) 299, 1199
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 1294
EcoRV GATATC 1 cut(s) 576
EcoT14I CCWWGG 4 cut(s) 904, 912, 924, 1149
EcoT22I ATGCAT 1 cut(s) 787
EcoT38I GRGCYC 2 cut(s) 134, 697
ErhI CCWWGG 4 cut(s) 904, 912, 924, 1149
Esp3I CGTCTC 1 cut(s) 1118
FalI AAGNNNNNCTT 2 cut(s) 962, 994
FblI GTMKAC 1 cut(s) 897
Fnu4HI GCNGC 2 cut(s) 5, 857
FokI GGATG 1 cut(s) 730
FriOI GRGCYC 2 cut(s) 134, 697
Fsp4HI GCNGC 2 cut(s) 5, 857
GlaI GCGC 2 cut(s) 54, 868
GluI GCNGC 2 cut(s) 5, 857
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 3 cut(s) 192, 478, 1030
HaeIII GGCC 6 cut(s) 261, 416, 436, 846, 903, 923
HapII CCGG 7 cut(s) 283, 290, 304, 339, 728, 848, 1189
HgaI GACGC 2 cut(s) 295, 351
HhaI GCGC 2 cut(s) 55, 869
Hin1I GRCGYC 1 cut(s) 287
Hin6I GCGC 2 cut(s) 53, 867
HinP1I GCGC 2 cut(s) 53, 867
HpaII CCGG 7 cut(s) 283, 290, 304, 339, 728, 848, 1189
HphI GGTGA 7 cut(s) 140, 181, 293, 621, 728, 742, 1193
Hpy166II GTNNAC 3 cut(s) 276, 898, 1301
Hpy188III TCNNGA 7 cut(s) 88, 125, 155, 209, 967, 1009, 1016
Hpy8I GTNNAC 3 cut(s) 276, 898, 1301
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 3 cut(s) 618, 1031, 1215
HpyCH4III ACNGT 7 cut(s) 152, 257, 299, 679, 881, 1052, 1129
HpyCH4IV ACGT 1 cut(s) 1308
HpyCH4V TGCA 7 cut(s) 4, 118, 237, 480, 674, 785, 1278
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 138, 433, 929, 944, 1237
HpyF3I CTNAG 3 cut(s) 951, 1133, 1254
HpySE526I ACGT 1 cut(s) 1308
Hsp92I GRCGYC 1 cut(s) 287
HspAI GCGC 2 cut(s) 53, 867
KpnI GGTACC 1 cut(s) 451
Kzo9I GATC 4 cut(s) 136, 620, 724, 748
LmnI GCTCC 5 cut(s) 211, 700, 864, 908, 1228
Lsp1109I GCAGC 2 cut(s) 16, 843
LweI GCATC 1 cut(s) 794
MaeII ACGT 1 cut(s) 1308
MalI GATC 4 cut(s) 138, 622, 726, 750
MboI GATC 4 cut(s) 136, 620, 724, 748
MboII GAAGA 7 cut(s) 46, 55, 58, 499, 902, 970, 973
MfeI CAATTG 2 cut(s) 475, 1247
MhlI GDGCHC 3 cut(s) 134, 395, 697
MlsI TGGCCA 2 cut(s) 261, 923
MluNI TGGCCA 2 cut(s) 261, 923
MlyI GAGTC 2 cut(s) 392, 1021
MmeI TCCRAC 3 cut(s) 366, 384, 784
Mox20I TGGCCA 2 cut(s) 261, 923
Mph1103I ATGCAT 1 cut(s) 787
MroXI GAANNNNTTC 1 cut(s) 1093
MscI TGGCCA 2 cut(s) 261, 923
MseI TTAA 3 cut(s) 557, 777, 852
MslI CAYNNNNRTG 3 cut(s) 426, 790, 1115
Msp20I TGGCCA 2 cut(s) 261, 923
MspA1I CMGCKG 1 cut(s) 373
MspCI CTTAAG 1 cut(s) 776
MspI CCGG 7 cut(s) 283, 290, 304, 339, 728, 848, 1189
MspR9I CCNGG 2 cut(s) 848, 1296
MunI CAATTG 2 cut(s) 475, 1247
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 1 cut(s) 1296
MvnI CGCG 2 cut(s) 141, 869
MwoI GCNNNNNNNGC 6 cut(s) 10, 138, 433, 929, 944, 1237
NciI CCSGG 1 cut(s) 848
NcoI CCATGG 2 cut(s) 912, 924
NdeII GATC 4 cut(s) 136, 620, 724, 748
NlaIV GGNNCC 4 cut(s) 449, 696, 910, 1230
NmuCI GTSAC 7 cut(s) 163, 299, 419, 499, 627, 985, 1199
NsiI ATGCAT 1 cut(s) 787
NspI RCATGY 3 cut(s) 237, 403, 785
PaeI GCATGC 1 cut(s) 785
PceI AGGCCT 1 cut(s) 436
PciI ACATGT 1 cut(s) 399
PcsI WCGNNNNNNNCGW 2 cut(s) 757, 1314
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 1 cut(s) 1093
PfeI GAWTC 8 cut(s) 91, 158, 225, 551, 604, 710, 733, 767
PkrI GCNGC 2 cut(s) 6, 858
Ple19I CGATCG 1 cut(s) 751
PleI GAGTC 2 cut(s) 391, 1020
PpsI GAGTC 2 cut(s) 391, 1020
PscI ACATGT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 1294
PspEI GGTNACC 2 cut(s) 299, 1199
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 1294
PspN4I GGNNCC 4 cut(s) 449, 696, 910, 1230
PspPI GGNCC 3 cut(s) 406, 845, 1129
PvuI CGATCG 1 cut(s) 751
RsaI GTAC 8 cut(s) 232, 254, 296, 377, 449, 455, 1187, 1302
RsaNI GTAC 8 cut(s) 231, 253, 295, 376, 448, 454, 1186, 1301
RseI CAYNNNNRTG 3 cut(s) 426, 790, 1115
SaqAI TTAA 3 cut(s) 557, 777, 852
SatI GCNGC 2 cut(s) 5, 857
Sau3AI GATC 4 cut(s) 136, 620, 724, 748
Sau96I GGNCC 3 cut(s) 406, 845, 1129
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 392, 1021
ScrFI CCNGG 2 cut(s) 848, 1296
SduI GDGCHC 3 cut(s) 134, 395, 697
SfaNI GCATC 1 cut(s) 794
SinI GGWCC 2 cut(s) 406, 1129
SmiMI CAYNNNNRTG 3 cut(s) 426, 790, 1115
SmlI CTYRAG 2 cut(s) 776, 965
SmoI CTYRAG 2 cut(s) 776, 965
SphI GCATGC 1 cut(s) 785
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 4 cut(s) 371, 698, 869, 1216
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 846, 1294
StyI CCWWGG 4 cut(s) 904, 912, 924, 1149
TaaI ACNGT 7 cut(s) 152, 257, 299, 679, 881, 1052, 1129
TaiI ACGT 1 cut(s) 1311
TaqI TCGA 2 cut(s) 89, 1015
TatI WGTACW 4 cut(s) 230, 252, 375, 453
TfiI GAWTC 8 cut(s) 91, 158, 225, 551, 604, 710, 733, 767
Tru1I TTAA 3 cut(s) 557, 777, 852
Tru9I TTAA 3 cut(s) 557, 777, 852
TscAI CASTG 6 cut(s) 14, 262, 684, 1057, 1239, 1289
TseFI GTSAC 7 cut(s) 163, 299, 419, 499, 627, 985, 1199
TseI GCWGC 2 cut(s) 4, 856
Tsp45I GTSAC 7 cut(s) 163, 299, 419, 499, 627, 985, 1199
TspDTI ATGAA 2 cut(s) 67, 543
TspRI CASTG 6 cut(s) 14, 262, 684, 1057, 1239, 1289
Vha464I CTTAAG 1 cut(s) 776
VpaK11BI GGWCC 2 cut(s) 406, 1129
XapI RAATTY 5 cut(s) 111, 120, 267, 683, 1220
XceI RCATGY 3 cut(s) 237, 403, 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 1117
XmiI GTMKAC 1 cut(s) 897
XmnI GAANNNNTTC 1 cut(s) 1093
ZrmI AGTACT 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.