Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009175

Physical Location & Seq

Genomic Coordinates Forward (+)

40163164 .. 40166343

Gene Structure 3180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGAAGTTGTGGAACAGAAAGACAACCCATTTTCCTCTACTGGTCTTCGTCTTCTCTCTGTTCTTGGTTTTCTCAATTCTCCACAATGAACGCAGCATTTTGGAAATTCAGGACAACCCAGATCGTGCTCCTCGCCATCAAATTCCAGTCACTTATGTAAAGCCGAATCGTCTCACCCATCAAAACCATGCTCCAGAGGTGTTGGATAGATTCAGTACATGCAACTCCACCAGAGAGTACAGTGGGAGGAAAATAGCGTGGAGTGGTCATCTCACGCCGAAGTACGGTGGCCGGAGGGAGAGTTTGGAGAGCTGTGACGTGTTTTCTGGCAAATGGGTGTTTGATAATTCTTCGTATCCGCTGTACAATGAGGCGGAGTGCCCTTACATGTCGGACCAGTTGGCCTGCCACAAACATGGAAGGTCTGATTTGGGTTATCAGTATTGGAGATGGCAACCCCATAATTGCAACTTGAAGAGATGGAATGTGATTGACATGTGGGAGAAGTTGAGGGGCAAAAGGTTGATGTTTGTAGGGGATTCATTAAACAGAGGTCAGTGGATATCAATGGTCTGCTTGTTGCAATCAGTGATTCCAGTGGATAAGAGATCCATGTCACCGAATGCCGCACTTACCATTTTCCGAGCCGAGGAATATAATGCTACTGTGGAATTTCTTTGGGCCCCTCTTCTAGTAGAATCTAATTCTGATGACCCAGTGAATCACAGATTGGATGATCGAATAATCCGTCCAGATTCAGTTCTCAAACATGCGTCAATATGGGAGAATGCAGACATATTGATTTTCAATTCCTACCTGTGGTGGAGACAAGGCCCAGTTAAGCTTTTATGGAGCACTGAAGCAAATGCTGTGTGTGAAGAATTAGATGGTATTGGAGCCATGGAACTGGCCATGGGGGCTTGGGCAGACTGGGCTTCTAAAGTTGATCCCCTCAAGAAGCGGGTCTTCTTTGTCACAATGTCTCCTACGCATCTCTGGAGTCAAGAGTGGAAGCCAGGAAATGAAGGTAATTGTTACAATGAGAAATCCCCCATTGAGTTGGAGGGCTACTGGGGAAGTGGCTCTGATCTCCCTACTATGAGCATGGTGGACAATGTCCTCAGTAAGTTGAGTTCAAAGGTTTCAGTTCTCAACATTACTCAACTGTCAGAGTACCGGAAGGATGGTCATCCTTCCATTTACCGGAAATTTTGGGAGGCACTAAAGCCTGAACAGTTGTCTAACCCAGCGAGTTACTCTGATTGCATACACTGGTGCTTGCCTGGTGTACCTGATGTTTGGAACGAGTTGCTATACCATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

443

Amino Acids

51.36

Weight (kDa)

6.57

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	103 - 157	1.1e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	160 - 440	3.5e-81	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01620 AT5G01620 AT5G01620
fragaria_vesca	FvH4_6g10720 FvH4_6g10720 FvH4_6g10720 FvH4_6g10720
malus_domestica	MD04G1165100.v1.1 MD12G1179100.v1.1
prunus_persica	Prupe.6G284200_v2.0.a1
pyrus_communis	pycom04g14720 pycom12g16900
rosa_chinensis	RchiOBHm_Chr3g0461751
rosa_laevigata	RLG00000024903
rosa_multiflora	Rmu_sc0000619.1_g000010
rosa_roxburghii	Rroxscaffold_6G00417990
rosa_rugosa	Rorug03G0053200
rosa_samantha	Rh3AG111400 Rh3BG114400 Rh3CG116700 Rh3DG116400
rosa_wichuraiana	Rw3G009430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	359, 374, 627, 961
AclWI	GGATC	2 cut(s)	603, 941
AcoI	YGGCCR	2 cut(s)	289, 909
AcsI	RAATTY	4 cut(s)	105, 141, 671, 1208
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	6 cut(s)	217, 239, 284, 365, 1175, 1290
AfiI	CCNNNNNNNGG	4 cut(s)	284, 649, 819, 1203
AflIII	ACRYGT	3 cut(s)	318, 387, 495
AgsI	TTSAA	3 cut(s)	475, 808, 1137
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	1015, 1282
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AluBI	AGCT	2 cut(s)	312, 844
AluI	AGCT	2 cut(s)	312, 844
Alw21I	GWGCWC	2 cut(s)	130, 857
Alw26I	GTCTC	3 cut(s)	176, 820, 987
AlwI	GGATC	2 cut(s)	603, 941
AoxI	GGCC	5 cut(s)	289, 402, 681, 832, 909
ApaI	GGGCCC	1 cut(s)	685
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	4 cut(s)	105, 141, 671, 1208
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
AspS9I	GGNCC	4 cut(s)	394, 681, 682, 833
AsuHPI	GGTGA	2 cut(s)	166, 609
AvaII	GGWCC	1 cut(s)	394
BaeGI	GKGCMC	2 cut(s)	383, 685
BalI	TGGCCA	1 cut(s)	911
BanII	GRGCYC	1 cut(s)	685
BbsI	GAAGAC	3 cut(s)	37, 43, 958
Bbv12I	GWGCWC	2 cut(s)	130, 857
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	6 cut(s)	144, 186, 444, 474, 881, 1178
BciT130I	CCWGG	2 cut(s)	1017, 1284
BciVI	GTATCC	1 cut(s)	366
BcoDI	GTCTC	3 cut(s)	176, 820, 987
BfaI	CTAG	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	917
BisI	GCNGC	2 cut(s)	94, 627
BlsI	GCNGC	2 cut(s)	95, 628
Bme1390I	CCNGG	2 cut(s)	1017, 1284
Bme18I	GGWCC	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	4 cut(s)	394, 681, 682, 833
BmiI	GGNNCC	3 cut(s)	683, 684, 898
BmrFI	CCNGG	2 cut(s)	1017, 1284
BmrI	ACTGGG	4 cut(s)	710, 830, 940, 1081
BmsI	GCATC	1 cut(s)	1000
BmuI	ACTGGG	4 cut(s)	710, 830, 940, 1081
BpiI	GAAGAC	3 cut(s)	37, 43, 958
BpmI	CTGGAG	2 cut(s)	177, 1018
BpuEI	CTTGAG	1 cut(s)	938
BsaBI	GATNNNNATC	1 cut(s)	1188
BsaJI	CCNNGG	3 cut(s)	648, 900, 912
BsaWI	WCCGGW	2 cut(s)	1176, 1203
BsaXI	ACNNNNNCTCC	4 cut(s)	286, 316, 967, 997
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 649, 819, 1203
Bse8I	GATNNNNATC	1 cut(s)	1188
BseBI	CCWGG	2 cut(s)	1017, 1284
BseDI	CCNNGG	3 cut(s)	648, 900, 912
BseGI	GGATG	3 cut(s)	739, 1189, 1189
BseJI	GATNNNNATC	1 cut(s)	1188
BseLI	CCNNNNNNNGG	4 cut(s)	284, 649, 819, 1203
BseMII	CTCAG	1 cut(s)	1135
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	2 cut(s)	383, 685
BseXI	GCAGC	1 cut(s)	105
BseYI	CCCAGC	1 cut(s)	1246
BshFI	GGCC	5 cut(s)	291, 404, 683, 834, 911
BsiHKAI	GWGCWC	2 cut(s)	130, 857
BsiSI	CCGG	3 cut(s)	292, 1177, 1204
BslI	CCNNNNNNNGG	4 cut(s)	284, 649, 819, 1203
BsmAI	GTCTC	3 cut(s)	176, 820, 987
BsmBI	CGTCTC	1 cut(s)	176
BsmI	GAATGC	2 cut(s)	628, 793
BsnI	GGCC	5 cut(s)	291, 404, 683, 834, 911
Bsp120I	GGGCCC	1 cut(s)	681
Bsp1286I	GDGCHC	4 cut(s)	130, 383, 685, 857
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	5 cut(s)	121, 608, 736, 946, 1087
Bsp19I	CCATGG	2 cut(s)	900, 912
BspACI	CCGC	4 cut(s)	359, 374, 627, 961
BspANI	GGCC	5 cut(s)	291, 404, 683, 834, 911
BspCNI	CTCAG	1 cut(s)	1134
BspLI	GGNNCC	3 cut(s)	683, 684, 898
BspPI	GGATC	2 cut(s)	603, 941
BsrGI	TGTACA	1 cut(s)	363
BssECI	CCNNGG	3 cut(s)	648, 900, 912
BssMI	GATC	5 cut(s)	121, 608, 736, 946, 1087
BssT1I	CCWWGG	2 cut(s)	900, 912
Bst2UI	CCWGG	2 cut(s)	1017, 1284
Bst4CI	ACNGT	5 cut(s)	242, 287, 667, 1167, 1236
Bst6I	CTCTTC	2 cut(s)	470, 693
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	406, 1280
BstDEI	CTNAG	1 cut(s)	1121
BstDSI	CCRYGG	2 cut(s)	900, 912
BstF5I	GGATG	3 cut(s)	739, 1189, 1189
BstKTI	GATC	5 cut(s)	124, 611, 739, 949, 1090
BstMAI	GTCTC	3 cut(s)	176, 820, 987
BstMBI	GATC	5 cut(s)	121, 608, 736, 946, 1087
BstMWI	GCNNNNNNNGC	2 cut(s)	917, 932
BstNI	CCWGG	2 cut(s)	1017, 1284
BstNSI	RCATGY	4 cut(s)	222, 391, 499, 773
BstSCI	CCNGG	2 cut(s)	1015, 1282
BstSLI	GKGCMC	2 cut(s)	383, 685
BstV1I	GCAGC	1 cut(s)	105
BstV2I	GAAGAC	3 cut(s)	37, 43, 958
BstX2I	RGATCY	1 cut(s)	608
BstXI	CCANNNNNNTGG	3 cut(s)	416, 907, 1060
BstYI	RGATCY	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	5 cut(s)	291, 404, 683, 834, 911
BtgI	CCRYGG	2 cut(s)	900, 912
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	739, 1189, 1189
BtsIMutI	CAGTG	7 cut(s)	247, 563, 594, 603, 723, 855, 1270
Cac8I	GCNNGC	2 cut(s)	406, 1280
Cfr13I	GGNCC	4 cut(s)	394, 681, 682, 833
CseI	GACGC	1 cut(s)	762
Csp6I	GTAC	6 cut(s)	216, 238, 283, 364, 1174, 1289
CviQI	GTAC	6 cut(s)	216, 238, 283, 364, 1174, 1289
DdeI	CTNAG	1 cut(s)	1121
DpnI	GATC	5 cut(s)	123, 610, 738, 948, 1089
DpnII	GATC	5 cut(s)	121, 608, 736, 946, 1087
EaeI	YGGCCR	2 cut(s)	289, 909
Eam1104I	CTCTTC	2 cut(s)	470, 693
EarI	CTCTTC	2 cut(s)	470, 693
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	900, 912
Eco24I	GRGCYC	1 cut(s)	685
Eco32I	GATATC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	879
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	1015, 1282
EcoRV	GATATC	1 cut(s)	564
EcoT14I	CCWWGG	2 cut(s)	900, 912
EcoT38I	GRGCYC	1 cut(s)	685
ErhI	CCWWGG	2 cut(s)	900, 912
Esp3I	CGTCTC	1 cut(s)	176
FalI	AAGNNNNNCTT	2 cut(s)	950, 982
FauI	CCCGC	1 cut(s)	954
Fnu4HI	GCNGC	2 cut(s)	94, 627
FokI	GGATG	3 cut(s)	746, 1176, 1196
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	2 cut(s)	94, 627
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	2 cut(s)	94, 627
GsaI	CCCAGC	1 cut(s)	1250
GsuI	CTGGAG	2 cut(s)	177, 1018
HaeIII	GGCC	5 cut(s)	291, 404, 683, 834, 911
HapII	CCGG	3 cut(s)	292, 1177, 1204
HgaI	GACGC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	8 cut(s)	166, 210, 539, 592, 698, 721, 755, 1000
HpaII	CCGG	3 cut(s)	292, 1177, 1204
HphI	GGTGA	2 cut(s)	166, 609
Hpy166II	GTNNAC	2 cut(s)	1111, 1289
Hpy188I	TCNGA	7 cut(s)	394, 427, 644, 709, 1087, 1171, 1261
Hpy188III	TCNNGA	6 cut(s)	110, 194, 752, 955, 997, 1004
Hpy8I	GTNNAC	2 cut(s)	1111, 1289
HpyAV	CCTTC	4 cut(s)	414, 1019, 1174, 1203
HpyCH4III	ACNGT	5 cut(s)	242, 287, 667, 1167, 1236
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	222, 468, 583, 791, 1266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	917, 932
HpyF3I	CTNAG	1 cut(s)	1121
HpySE526I	ACGT	1 cut(s)	318
Kzo9I	GATC	5 cut(s)	121, 608, 736, 946, 1087
LmnI	GCTCC	4 cut(s)	133, 196, 852, 896
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	1000
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	6 cut(s)	148, 314, 615, 973, 1034, 1253
MalI	GATC	5 cut(s)	123, 610, 738, 948, 1089
MboI	GATC	5 cut(s)	121, 608, 736, 946, 1087
MboII	GAAGA	7 cut(s)	37, 43, 342, 487, 680, 890, 958
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	4 cut(s)	130, 383, 685, 857
MlsI	TGGCCA	1 cut(s)	911
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	1 cut(s)	1009
MmeI	TCCRAC	3 cut(s)	183, 372, 1041
Mox20I	TGGCCA	1 cut(s)	911
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	2 cut(s)	545, 840
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	911
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	3 cut(s)	292, 1177, 1204
MspR9I	CCNGG	2 cut(s)	1017, 1284
Mva1269I	GAATGC	2 cut(s)	628, 793
MvaI	CCWGG	2 cut(s)	1017, 1284
MwoI	GCNNNNNNNGC	2 cut(s)	917, 932
NcoI	CCATGG	2 cut(s)	900, 912
NdeII	GATC	5 cut(s)	121, 608, 736, 946, 1087
NlaIV	GGNNCC	3 cut(s)	683, 684, 898
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	4 cut(s)	148, 314, 615, 973
NspI	RCATGY	4 cut(s)	222, 391, 499, 773
PciI	ACATGT	2 cut(s)	387, 495
PcsI	WCGNNNNNNNCGW	1 cut(s)	745
PctI	GAATGC	2 cut(s)	628, 793
PfeI	GAWTC	7 cut(s)	166, 210, 539, 592, 698, 721, 755
PflFI	GACNNNGTC	1 cut(s)	1115
PkrI	GCNGC	2 cut(s)	95, 628
PleI	GAGTC	1 cut(s)	1008
PpsI	GAGTC	1 cut(s)	1008
PscI	ACATGT	2 cut(s)	387, 495
Psp6I	CCWGG	2 cut(s)	1015, 1282
PspFI	CCCAGC	1 cut(s)	1246
PspGI	CCWGG	2 cut(s)	1015, 1282
PspN4I	GGNNCC	3 cut(s)	683, 684, 898
PspOMI	GGGCCC	1 cut(s)	681
PspPI	GGNCC	4 cut(s)	394, 681, 682, 833
PsrI	GAACNNNNNNTAC	2 cut(s)	1117, 1149
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	1115
RsaI	GTAC	6 cut(s)	217, 239, 284, 365, 1175, 1290
RsaNI	GTAC	6 cut(s)	216, 238, 283, 364, 1174, 1289
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	545, 840
SatI	GCNGC	2 cut(s)	94, 627
Sau3AI	GATC	5 cut(s)	121, 608, 736, 946, 1087
Sau96I	GGNCC	4 cut(s)	394, 681, 682, 833
SchI	GAGTC	1 cut(s)	1009
ScrFI	CCNGG	2 cut(s)	1017, 1284
SduI	GDGCHC	4 cut(s)	130, 383, 685, 857
SfaNI	GCATC	1 cut(s)	1000
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
SsiI	CCGC	4 cut(s)	359, 374, 627, 961
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	2 cut(s)	1015, 1282
StyI	CCWWGG	2 cut(s)	900, 912
TaaI	ACNGT	5 cut(s)	242, 287, 667, 1167, 1236
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	739
TatI	WGTACW	3 cut(s)	215, 237, 363
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	7 cut(s)	166, 210, 539, 592, 698, 721, 755
Tru1I	TTAA	2 cut(s)	545, 840
Tru9I	TTAA	2 cut(s)	545, 840
TscAI	CASTG	7 cut(s)	247, 563, 594, 603, 723, 862, 1277
TseFI	GTSAC	4 cut(s)	148, 314, 615, 973
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	4 cut(s)	148, 314, 615, 973
TspDTI	ATGAA	4 cut(s)	17, 102, 531, 1038
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	7 cut(s)	247, 563, 594, 603, 723, 862, 1277
Tth111I	GACNNNGTC	1 cut(s)	1115
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	4 cut(s)	105, 141, 671, 1208
XceI	RCATGY	4 cut(s)	222, 391, 499, 773
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.