pycom04g14720

Protein trichome birefringence-like 35

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
17539961 .. 17542787
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14720.5

Sequence Viewer

Length: 1341 bp
ATGCAGCCGTCGCAGAGGTGGAAGTGGAGCAAGAAGAAAACCCAGTTTCCTGCTCTGGTGTTCGTCTTGTTTCTGTTCATAGCGTTCTCGAATCTCCACAGAGAACGCAGCATTCTGCAAATTCAAGAGAGCCCTGATCTCGTTCTTCACCGTCAAGATTCGTTCACTTTTGTAAAGCCGAATCTTTTCACCCCGCAAAATCATGCTCCAGGGGTTTTGAATAGATTCAGTACATGCAACTCCACCAGAGAGTACAGTGGTCAGAAAATTTTGTGGACTGCCAGGACGCCGGAGTACGGTCACCGGAGAGAGAGTTTGGAGAGGTGTGATGTGTTTTCCGGCAAATGGGTGTTTGATAATGCTTCGTATCCGCTGTACAAGGAGTCGGAGTGCCCTTACATGTCGGACCAGTTGGCCTGTCACAAGCATGGGAGGCCTGATTTGGGGTACCAGTACTGGAGATGGCAACCCCACAATTGCAACTTGAAGAGATGGAATGTGACTGAAATGTGGGAGAAATTGAGAGGCAAAAGGCTGATGTTTGTAGGGGATTCACTAAACAGAGGGCAGTGGATATCGATGGTCTGTTTGTTGCAGTCTGTGATTCCCGCAGATAAGAGATCAATGTCGCCAAATGCTGACCTAACCATTTTCCAAGCAGAGGAATATAATGCTACTGTGGAATTTCTCTGGGCTCCGCTTCTTGTAGAATCTAATTCTGATGACCCGGTGAATCACCGAACATCTGATAGGATAATCCGACCAGATTCAGTTCTTAAGCATGCATCAATATGGGAGGATGCTGATATACTGATATTCAATTCCTACCTTTGGTGGAGACAAGGGCCAGTTAAGCTGTTATGGAGCGCTGAAGCAAACAGTGTTTGTGAAGAAGTAGACGGCCTTGGAGCCATGGAGTTGGCCATGGGGGCTTGGGCAGACTGGGCTTCCAAGGTCAATCCCCTCAAGAAGCGGGTCTTCTTTGTTACAACGTCTCCTACGCATCTCTGGAGTAGAGAGTGGAAACCCGAAAGTGAAGGTAATTGTTACAGTGAGAAATCCCCCATTGACTCGGAGGGCTACTGGGGAAGTGGTTCTGACCTGCCCACCATGAGCATGATGGAGAAGGTCCTCAGCAAGTTGAGTTCGAAGGTTTCTGTTATCAACATTACTCAATTATCGGAGTACCGGAAAGATGGCCACCCTTCCATCTACCGCAAATTCTGGGAGCCACTGCGGCCTGAGCAATTGTCTAATCCCACGAGTTACTCCGATTGCATACACTGGTGCTTGCCTGGTGTACCCGATGTATGGAACGAGTTGCTGTTCCAATTCTTGTAA

Protein Analysis

447

Amino Acids

52.02

Weight (kDa)

7.17

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1110
Acc65I GGTACC 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 447
AccI GTMKAC 1 cut(s) 897
AciI CCGC 7 cut(s) 194, 371, 609, 698, 973, 1216, 1237
AcoI YGGCCR 2 cut(s) 921, 1198
AcsI RAATTY 4 cut(s) 120, 267, 683, 1220
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 8 cut(s) 232, 254, 296, 377, 449, 455, 1187, 1302
AfeI AGCGCT 1 cut(s) 868
AfiI CCNNNNNNNGG 6 cut(s) 296, 345, 443, 661, 831, 1311
AflII CTTAAG 1 cut(s) 776
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 4 cut(s) 125, 220, 487, 820
AjnI CCWGG 3 cut(s) 208, 281, 1294
AluBI AGCT 1 cut(s) 856
AluI AGCT 1 cut(s) 856
Alw26I GTCTC 2 cut(s) 832, 999
Aor51HI AGCGCT 1 cut(s) 868
AoxI GGCC 7 cut(s) 414, 434, 845, 901, 921, 1198, 1238
ApeKI GCWGC 2 cut(s) 4, 108
ApoI RAATTY 4 cut(s) 120, 267, 683, 1220
Asp700I GAANNNNTTC 3 cut(s) 185, 224, 1093
Asp718I GGTACC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 3 cut(s) 406, 845, 1129
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 5 cut(s) 140, 181, 293, 728, 742
AsuII TTCGAA 1 cut(s) 1148
AvaII GGWCC 2 cut(s) 406, 1129
BaeGI GKGCMC 1 cut(s) 395
BalI TGGCCA 2 cut(s) 923, 1200
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 2 cut(s) 134, 697
BauI CACGAG 1 cut(s) 1261
BbsI GAAGAC 1 cut(s) 970
BbvCI CCTCAGC 1 cut(s) 1133
BbvI GCAGC 2 cut(s) 16, 120
BccI CCATC 6 cut(s) 456, 486, 574, 1114, 1190, 1217
BceAI ACGGC 1 cut(s) 916
BciT130I CCWGG 3 cut(s) 210, 283, 1296
BciVI GTATCC 1 cut(s) 378
BcnI CCSGG 1 cut(s) 728
BcoDI GTCTC 2 cut(s) 832, 999
BfoI RGCGCY 1 cut(s) 870
BfrI CTTAAG 1 cut(s) 776
BfuAI ACCTGC 1 cut(s) 1110
BfuI GTATCC 1 cut(s) 378
BglI GCCNNNNNGGC 2 cut(s) 929, 1237
BisI GCNGC 3 cut(s) 5, 109, 1238
BlsI GCNGC 3 cut(s) 6, 110, 1239
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 4 cut(s) 210, 283, 728, 1296
Bme18I GGWCC 2 cut(s) 406, 1129
BmgT120I GGNCC 3 cut(s) 406, 845, 1129
BmiI GGNNCC 4 cut(s) 449, 696, 910, 1230
BmrFI CCNGG 4 cut(s) 210, 283, 728, 1296
BmrI ACTGGG 3 cut(s) 37, 952, 1093
BmsI GCATC 3 cut(s) 790, 794, 1012
BmuI ACTGGG 3 cut(s) 37, 952, 1093
BpiI GAAGAC 1 cut(s) 970
BpmI CTGGAG 3 cut(s) 192, 478, 1030
Bpu10I CCTNAGC 2 cut(s) 1133, 1242
Bpu14I TTCGAA 1 cut(s) 1148
BpuEI CTTGAG 1 cut(s) 950
BpuMI CCSGG 1 cut(s) 728
Bsa29I ATCGAT 1 cut(s) 578
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 5 cut(s) 209, 904, 912, 924, 951
BsaWI WCCGGW 2 cut(s) 303, 1188
BsaXI ACNNNNNCTCC 6 cut(s) 298, 328, 374, 404, 979, 1009
Bsc4I CCNNNNNNNGG 6 cut(s) 296, 345, 443, 661, 831, 1311
Bse1I ACTGG 8 cut(s) 43, 409, 451, 461, 848, 947, 1088, 1289
BseBI CCWGG 3 cut(s) 210, 283, 1296
BseCI ATCGAT 1 cut(s) 578
BseDI CCNNGG 5 cut(s) 209, 904, 912, 924, 951
BseGI GGATG 1 cut(s) 805
BseLI CCNNNNNNNGG 6 cut(s) 296, 345, 443, 661, 831, 1311
BseMII CTCAG 2 cut(s) 1147, 1233
BseNI ACTGG 8 cut(s) 43, 409, 451, 461, 848, 947, 1088, 1289
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 2 cut(s) 16, 120
BshFI GGCC 7 cut(s) 416, 436, 847, 903, 923, 1200, 1240
BshNI GGYRCC 1 cut(s) 447
BshVI ATCGAT 1 cut(s) 578
BsiSI CCGG 5 cut(s) 290, 304, 339, 728, 1189
BslI CCNNNNNNNGG 6 cut(s) 296, 345, 443, 661, 831, 1311
BsmAI GTCTC 2 cut(s) 832, 999
BsmBI CGTCTC 1 cut(s) 999
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 7 cut(s) 416, 436, 847, 903, 923, 1200, 1240
Bsp119I TTCGAA 1 cut(s) 1148
Bsp1286I GDGCHC 3 cut(s) 134, 395, 697
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 136, 620
Bsp19I CCATGG 2 cut(s) 912, 924
BspACI CCGC 7 cut(s) 194, 371, 609, 698, 973, 1216, 1237
BspANI GGCC 7 cut(s) 416, 436, 847, 903, 923, 1200, 1240
BspCNI CTCAG 2 cut(s) 1146, 1234
BspDI ATCGAT 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 449, 696, 910, 1230
BspMI ACCTGC 1 cut(s) 1110
BspT104I TTCGAA 1 cut(s) 1148
BspT107I GGYRCC 1 cut(s) 447
BspTI CTTAAG 1 cut(s) 776
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 8 cut(s) 43, 409, 451, 461, 848, 947, 1088, 1289
BssECI CCNNGG 5 cut(s) 209, 904, 912, 924, 951
BssMI GATC 2 cut(s) 136, 620
BssNI GRCGYC 1 cut(s) 287
BssSI CACGAG 1 cut(s) 1261
BssT1I CCWWGG 4 cut(s) 904, 912, 924, 951
Bst2BI CACGAG 1 cut(s) 1261
Bst2UI CCWGG 3 cut(s) 210, 283, 1296
Bst4CI ACNGT 6 cut(s) 152, 257, 299, 679, 881, 1052
Bst6I CTCTTC 1 cut(s) 482
BstACI GRCGYC 1 cut(s) 287
BstAFI CTTAAG 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 1148
BstC8I GCNNGC 2 cut(s) 783, 1292
BstDEI CTNAG 2 cut(s) 1133, 1242
BstDSI CCRYGG 2 cut(s) 912, 924
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 1 cut(s) 805
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 2 cut(s) 139, 623
BstMAI GTCTC 2 cut(s) 832, 999
BstMBI GATC 2 cut(s) 136, 620
BstMWI GCNNNNNNNGC 7 cut(s) 10, 433, 853, 929, 944, 1237, 1243
BstNI CCWGG 3 cut(s) 210, 283, 1296
BstNSI RCATGY 3 cut(s) 237, 403, 785
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 4 cut(s) 208, 281, 726, 1294
BstSLI GKGCMC 1 cut(s) 395
BstV1I GCAGC 2 cut(s) 16, 120
BstV2I GAAGAC 1 cut(s) 970
BstXI CCANNNNNNTGG 1 cut(s) 919
Bsu15I ATCGAT 1 cut(s) 578
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 7 cut(s) 416, 436, 847, 903, 923, 1200, 1240
BsuTUI ATCGAT 1 cut(s) 578
BtgI CCRYGG 2 cut(s) 912, 924
BtsCI GGATG 1 cut(s) 805
BtsI GCAGTG 2 cut(s) 575, 1232
BtsIMutI CAGTG 6 cut(s) 262, 575, 886, 1057, 1232, 1282
BveI ACCTGC 1 cut(s) 1110
Cac8I GCNNGC 2 cut(s) 783, 1292
CfoI GCGC 1 cut(s) 869
Cfr13I GGNCC 3 cut(s) 406, 845, 1129
ClaI ATCGAT 1 cut(s) 578
CseI GACGC 1 cut(s) 295
Csp6I GTAC 8 cut(s) 231, 253, 295, 376, 448, 454, 1186, 1301
CviAII CATG 9 cut(s) 203, 234, 400, 428, 782, 913, 925, 1111, 1117
CviQI GTAC 8 cut(s) 231, 253, 295, 376, 448, 454, 1186, 1301
DdeI CTNAG 2 cut(s) 1133, 1242
DpnI GATC 2 cut(s) 138, 622
DpnII GATC 2 cut(s) 136, 620
EaeI YGGCCR 2 cut(s) 921, 1198
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco130I CCWWGG 4 cut(s) 904, 912, 924, 951
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 134, 697
Eco32I GATATC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 406, 1129
Eco47III AGCGCT 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 891
Eco91I GGTNACC 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 1129
EcoO65I GGTNACC 1 cut(s) 299
EcoRII CCWGG 3 cut(s) 208, 281, 1294
EcoRV GATATC 1 cut(s) 576
EcoT14I CCWWGG 4 cut(s) 904, 912, 924, 951
EcoT22I ATGCAT 1 cut(s) 787
EcoT38I GRGCYC 2 cut(s) 134, 697
ErhI CCWWGG 4 cut(s) 904, 912, 924, 951
Esp3I CGTCTC 1 cut(s) 999
FaeI CATG 9 cut(s) 206, 237, 403, 431, 785, 916, 928, 1114, 1120
FalI AAGNNNNNCTT 2 cut(s) 962, 994
FatI CATG 9 cut(s) 202, 233, 399, 427, 781, 912, 924, 1110, 1116
FauI CCCGC 3 cut(s) 201, 616, 966
FblI GTMKAC 1 cut(s) 897
Fnu4HI GCNGC 3 cut(s) 5, 109, 1238
FokI GGATG 1 cut(s) 812
FriOI GRGCYC 2 cut(s) 134, 697
Fsp4HI GCNGC 3 cut(s) 5, 109, 1238
GlaI GCGC 1 cut(s) 868
GluI GCNGC 3 cut(s) 5, 109, 1238
GsuI CTGGAG 3 cut(s) 192, 478, 1030
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 7 cut(s) 416, 436, 847, 903, 923, 1200, 1240
HapII CCGG 5 cut(s) 290, 304, 339, 728, 1189
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 869
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 9 cut(s) 206, 237, 403, 431, 785, 916, 928, 1114, 1120
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HpaII CCGG 5 cut(s) 290, 304, 339, 728, 1189
HphI GGTGA 5 cut(s) 140, 181, 293, 728, 742
Hpy166II GTNNAC 4 cut(s) 165, 276, 898, 1301
Hpy188III TCNNGA 5 cut(s) 88, 125, 155, 967, 1009
Hpy8I GTNNAC 4 cut(s) 165, 276, 898, 1301
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 4 cut(s) 1031, 1120, 1144, 1215
HpyCH4III ACNGT 6 cut(s) 152, 257, 299, 679, 881, 1052
HpyCH4IV ACGT 1 cut(s) 992
HpyCH4V TGCA 7 cut(s) 4, 118, 237, 480, 595, 785, 1278
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 433, 853, 929, 944, 1237, 1243
HpyF3I CTNAG 2 cut(s) 1133, 1242
HpySE526I ACGT 1 cut(s) 992
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 9 cut(s) 206, 237, 403, 431, 785, 916, 928, 1114, 1120
HspAI GCGC 1 cut(s) 867
KpnI GGTACC 1 cut(s) 451
Kzo9I GATC 2 cut(s) 136, 620
LmnI GCTCC 6 cut(s) 27, 211, 700, 864, 908, 1228
Lsp1109I GCAGC 2 cut(s) 16, 120
LweI GCATC 3 cut(s) 790, 794, 1012
MaeII ACGT 1 cut(s) 992
MaeIII GTNAC 6 cut(s) 299, 419, 499, 985, 1046, 1265
MalI GATC 2 cut(s) 138, 622
MboI GATC 2 cut(s) 136, 620
MboII GAAGA 5 cut(s) 46, 137, 499, 902, 970
MfeI CAATTG 2 cut(s) 475, 1247
MhlI GDGCHC 3 cut(s) 134, 395, 697
MlsI TGGCCA 2 cut(s) 923, 1200
MluNI TGGCCA 2 cut(s) 923, 1200
MlyI GAGTC 2 cut(s) 392, 1064
MmeI TCCRAC 3 cut(s) 366, 384, 784
Mox20I TGGCCA 2 cut(s) 923, 1200
Mph1103I ATGCAT 1 cut(s) 787
MroXI GAANNNNTTC 3 cut(s) 185, 224, 1093
MscI TGGCCA 2 cut(s) 923, 1200
MseI TTAA 2 cut(s) 777, 852
MslI CAYNNNNRTG 3 cut(s) 426, 790, 1115
Msp20I TGGCCA 2 cut(s) 923, 1200
MspA1I CMGCKG 1 cut(s) 373
MspCI CTTAAG 1 cut(s) 776
MspI CCGG 5 cut(s) 290, 304, 339, 728, 1189
MspR9I CCNGG 4 cut(s) 210, 283, 728, 1296
MunI CAATTG 2 cut(s) 475, 1247
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 3 cut(s) 210, 283, 1296
MwoI GCNNNNNNNGC 7 cut(s) 10, 433, 853, 929, 944, 1237, 1243
NciI CCSGG 1 cut(s) 728
NcoI CCATGG 2 cut(s) 912, 924
NdeII GATC 2 cut(s) 136, 620
NlaIII CATG 9 cut(s) 206, 237, 403, 431, 785, 916, 928, 1114, 1120
NlaIV GGNNCC 4 cut(s) 449, 696, 910, 1230
NmuCI GTSAC 3 cut(s) 299, 419, 499
NsiI ATGCAT 1 cut(s) 787
NspI RCATGY 3 cut(s) 237, 403, 785
NspV TTCGAA 1 cut(s) 1148
PaeI GCATGC 1 cut(s) 785
PceI AGGCCT 1 cut(s) 436
PciI ACATGT 1 cut(s) 399
PctI GAATGC 1 cut(s) 111
PdmI GAANNNNTTC 3 cut(s) 185, 224, 1093
PfeI GAWTC 9 cut(s) 91, 158, 181, 225, 551, 604, 710, 733, 767
PkrI GCNGC 3 cut(s) 6, 110, 1239
PleI GAGTC 2 cut(s) 391, 1064
PpsI GAGTC 2 cut(s) 391, 1064
PpuMI RGGWCCY 1 cut(s) 1129
PscI ACATGT 1 cut(s) 399
Psp5II RGGWCCY 1 cut(s) 1129
Psp6I CCWGG 3 cut(s) 208, 281, 1294
PspEI GGTNACC 1 cut(s) 299
PspGI CCWGG 3 cut(s) 208, 281, 1294
PspN4I GGNNCC 4 cut(s) 449, 696, 910, 1230
PspPI GGNCC 3 cut(s) 406, 845, 1129
PspPPI RGGWCCY 1 cut(s) 1129
RsaI GTAC 8 cut(s) 232, 254, 296, 377, 449, 455, 1187, 1302
RsaNI GTAC 8 cut(s) 231, 253, 295, 376, 448, 454, 1186, 1301
RseI CAYNNNNRTG 3 cut(s) 426, 790, 1115
SaqAI TTAA 2 cut(s) 777, 852
SatI GCNGC 3 cut(s) 5, 109, 1238
Sau3AI GATC 2 cut(s) 136, 620
Sau96I GGNCC 3 cut(s) 406, 845, 1129
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 392, 1064
ScrFI CCNGG 4 cut(s) 210, 283, 728, 1296
SduI GDGCHC 3 cut(s) 134, 395, 697
SfaNI GCATC 3 cut(s) 790, 794, 1012
SfuI TTCGAA 1 cut(s) 1148
SinI GGWCC 2 cut(s) 406, 1129
SmiMI CAYNNNNRTG 3 cut(s) 426, 790, 1115
SmlI CTYRAG 2 cut(s) 776, 965
SmoI CTYRAG 2 cut(s) 776, 965
SphI GCATGC 1 cut(s) 785
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 7 cut(s) 194, 371, 609, 698, 973, 1216, 1237
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 4 cut(s) 208, 281, 726, 1294
StyI CCWWGG 4 cut(s) 904, 912, 924, 951
TaaI ACNGT 6 cut(s) 152, 257, 299, 679, 881, 1052
TaiI ACGT 1 cut(s) 995
TaqI TCGA 3 cut(s) 89, 578, 1148
TatI WGTACW 4 cut(s) 230, 252, 375, 453
TauI GCSGC 1 cut(s) 1240
TfiI GAWTC 9 cut(s) 91, 158, 181, 225, 551, 604, 710, 733, 767
Tru1I TTAA 2 cut(s) 777, 852
Tru9I TTAA 2 cut(s) 777, 852
TscAI CASTG 6 cut(s) 262, 575, 886, 1057, 1239, 1289
TseFI GTSAC 3 cut(s) 299, 419, 499
TseI GCWGC 2 cut(s) 4, 108
Tsp45I GTSAC 3 cut(s) 299, 419, 499
TspDTI ATGAA 1 cut(s) 67
TspRI CASTG 6 cut(s) 262, 575, 886, 1057, 1239, 1289
Vha464I CTTAAG 1 cut(s) 776
VpaK11BI GGWCC 2 cut(s) 406, 1129
XapI RAATTY 4 cut(s) 120, 267, 683, 1220
XceI RCATGY 3 cut(s) 237, 403, 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 1117
XmiI GTMKAC 1 cut(s) 897
XmnI GAANNNNTTC 3 cut(s) 185, 224, 1093
ZrmI AGTACT 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.