Rmu_sc0000619.1_g000010

Protein trichome birefringence-like 35

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000619.1
Physical Location & Seq
Reverse (-)
13646 .. 19276
5631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000619.1_g000010.1.cds

Sequence Viewer

Length: 1530 bp
atggaggtgatgggggcagtggtggaggtggtggtggactctcaaaataatggcaaatctagagaaggtcgctcaagaccaataatatcactcaagaccaccacattgctggagaggccggccaccagagagcctggcgacggtggggatggggcagaagcagaatcgggctgctgctcacttcacttagatttcggcttaggcctgggctcaaatttgagttgttgggctctctgttatgggccagtagggagggtgttttactaccctcatttatcacttagtgatgaaggtggcattttggaaattcaagacaacccagatcgtgctcctcgccatcaaattccagtcacttatgtaaagccgaatcgtctcacccatcaaaaccatgctccagaggtgttggatagattcagtacgtgcaactccaccagagagtacagtgggaggaaaatagcgtggagtggtcatcttaagccggagtacggtggccggagggagagtttggagagctgtgacttgttttccggcaaatgggtgttagataattcttcgtatccactgtacaatgaggccgagtgcccttacatgtcggaccagttggcctgccacaaacatggaaggtctgatttggattatcagtattggagatggcaaccccataattgcaacttgaagagatggaatgtgattgacatgtgggagaagttgaggtgcaaaaggttgatgtttgtaggggattcattaaacagaggtcagtggatatcaatggtctgcttgttgcaatcagtgattccagcggataagagatccatgtcaccgaatgccgcccttaccattttccgagccgaggaatataatgctactgtggaatttctttgggcccctcttctagtagaatctaattctgatgacccagtgaatcacaggttggatgatcgaataatccgtccagattcagttcttaaacatgcatcaatatgggagaatgcagacatattgattttcaattcctacctgtggtggagacaaggcccggttaagcttttatggagcactgaagcaaatgctgtgtgtgaagaattagatggtataggagccatggaattggccatgggcgcttgggcagactgggcttctaaagttgatcccctcaagaagcgggtcttctttgtcacaatgtctcctacacatctctggagtcaagagtggaagccaggagatgaaggtaattgttacaatgagaaatcccccattgagttggagggctactggggaagtggctctgatctccctactatgagcatggtggacaatgtcctcagtaagttgagttcaaaggtttcagttctcaacattactcaactgtcagagtaccggaaagatggtcatccttccatttaccggaaattttgggaggcactaaagcctgaacagttgtctaacccagcgagttactctgattgcatacactggtgcttgcctggtgtacctgatgtttggaacgagttgctttaccattttttgtaa

Protein Analysis

509

Amino Acids

57.97

Weight (kDa)

5.58

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 800, 828, 1162
AclWI GGATC 2 cut(s) 804, 1142
AcoI YGGCCR 3 cut(s) 120, 490, 1110
AcsI RAATTY 5 cut(s) 214, 306, 342, 872, 1409
AcuI CTGAAG 1 cut(s) 1080
AdeI CACNNNGTG 1 cut(s) 284
AfaI GTAC 6 cut(s) 418, 440, 485, 566, 1376, 1491
AfiI CCNNNNNNNGG 6 cut(s) 140, 485, 534, 850, 1020, 1404
AflII CTTAAG 1 cut(s) 473
AflIII ACRYGT 2 cut(s) 588, 696
AgsI TTSAA 4 cut(s) 311, 676, 1009, 1338
AjnI CCWGG 4 cut(s) 133, 204, 1216, 1483
AjuI GAANNNNNNNTTGG 2 cut(s) 914, 946
AluBI AGCT 2 cut(s) 513, 1045
AluI AGCT 2 cut(s) 513, 1045
Alw21I GWGCWC 2 cut(s) 331, 1058
Alw26I GTCTC 3 cut(s) 377, 1021, 1188
AlwI GGATC 2 cut(s) 804, 1142
ApaI GGGCCC 1 cut(s) 886
ApeKI GCWGC 2 cut(s) 171, 174
ApoI RAATTY 5 cut(s) 214, 306, 342, 872, 1409
ArsI GACNNNNNNTTYG 2 cut(s) 934, 966
AspLEI GCGC 1 cut(s) 1121
AspS9I GGNCC 5 cut(s) 242, 595, 882, 883, 1034
AsuC2I CCSGG 1 cut(s) 1037
AsuHPI GGTGA 3 cut(s) 19, 367, 810
AvaII GGWCC 1 cut(s) 595
BaeGI GKGCMC 2 cut(s) 584, 886
BalI TGGCCA 1 cut(s) 1112
BanII GRGCYC 3 cut(s) 212, 232, 886
BbsI GAAGAC 1 cut(s) 1159
Bbv12I GWGCWC 2 cut(s) 331, 1058
BbvI GCAGC 2 cut(s) 158, 161
BccI CCATC 8 cut(s) 4, 143, 345, 387, 645, 675, 1082, 1379
BciT130I CCWGG 4 cut(s) 135, 206, 1218, 1485
BciVI GTATCC 1 cut(s) 567
BcnI CCSGG 1 cut(s) 1037
BcoDI GTCTC 3 cut(s) 377, 1021, 1188
BfaI CTAG 2 cut(s) 60, 893
BfoI RGCGCY 1 cut(s) 1122
BfrI CTTAAG 1 cut(s) 473
BfuI GTATCC 1 cut(s) 567
BisI GCNGC 3 cut(s) 172, 175, 828
BlsI GCNGC 3 cut(s) 173, 176, 829
Bme1390I CCNGG 5 cut(s) 135, 206, 1037, 1218, 1485
Bme18I GGWCC 1 cut(s) 595
BmgT120I GGNCC 5 cut(s) 242, 595, 882, 883, 1034
BmiI GGNNCC 3 cut(s) 884, 885, 1099
BmrFI CCNGG 5 cut(s) 135, 206, 1037, 1218, 1485
BmrI ACTGGG 3 cut(s) 911, 1141, 1282
BmsI GCATC 1 cut(s) 983
BmuI ACTGGG 3 cut(s) 911, 1141, 1282
BpiI GAAGAC 1 cut(s) 1159
BpmI CTGGAG 3 cut(s) 131, 378, 1219
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 3 cut(s) 58, 77, 1139
BpuMI CCSGG 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 1389
BsaJI CCNNGG 4 cut(s) 205, 849, 1101, 1113
BsaWI WCCGGW 2 cut(s) 1377, 1404
BsaXI ACNNNNNCTCC 4 cut(s) 487, 517, 1168, 1198
Bsc4I CCNNNNNNNGG 6 cut(s) 140, 485, 534, 850, 1020, 1404
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 7 cut(s) 245, 347, 598, 917, 1136, 1277, 1478
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 1389
BseBI CCWGG 4 cut(s) 135, 206, 1218, 1485
BseDI CCNNGG 4 cut(s) 205, 849, 1101, 1113
BseGI GGATG 3 cut(s) 154, 940, 1390
BseJI GATNNNNATC 1 cut(s) 1389
BseLI CCNNNNNNNGG 6 cut(s) 140, 485, 534, 850, 1020, 1404
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 1336
BseNI ACTGG 7 cut(s) 245, 347, 598, 917, 1136, 1277, 1478
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 2 cut(s) 584, 886
BseXI GCAGC 2 cut(s) 158, 161
BseYI CCCAGC 1 cut(s) 1447
BsiHKAI GWGCWC 2 cut(s) 331, 1058
BsiSI CCGG 7 cut(s) 119, 479, 493, 528, 1037, 1378, 1405
BslI CCNNNNNNNGG 6 cut(s) 140, 485, 534, 850, 1020, 1404
BsmAI GTCTC 3 cut(s) 377, 1021, 1188
BsmBI CGTCTC 1 cut(s) 377
BsmI GAATGC 2 cut(s) 829, 994
Bsp120I GGGCCC 1 cut(s) 882
Bsp1286I GDGCHC 6 cut(s) 212, 232, 331, 584, 886, 1058
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 5 cut(s) 322, 809, 937, 1147, 1288
Bsp19I CCATGG 2 cut(s) 1101, 1113
BspACI CCGC 3 cut(s) 800, 828, 1162
BspCNI CTCAG 1 cut(s) 1335
BspLI GGNNCC 3 cut(s) 884, 885, 1099
BspPI GGATC 2 cut(s) 804, 1142
BspTI CTTAAG 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 118
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 7 cut(s) 245, 347, 598, 917, 1136, 1277, 1478
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 4 cut(s) 205, 849, 1101, 1113
BssMI GATC 5 cut(s) 322, 809, 937, 1147, 1288
BssT1I CCWWGG 2 cut(s) 1101, 1113
Bst2UI CCWGG 4 cut(s) 135, 206, 1218, 1485
Bst4CI ACNGT 7 cut(s) 143, 443, 488, 564, 868, 1368, 1437
Bst6I CTCTTC 2 cut(s) 671, 894
BstAFI CTTAAG 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 420
BstC8I GCNNGC 3 cut(s) 120, 607, 1481
BstDEI CTNAG 4 cut(s) 187, 199, 281, 1322
BstDSI CCRYGG 2 cut(s) 1101, 1113
BstF5I GGATG 3 cut(s) 154, 940, 1390
BstH2I RGCGCY 1 cut(s) 1122
BstHHI GCGC 1 cut(s) 1121
BstKTI GATC 5 cut(s) 325, 812, 940, 1150, 1291
BstMAI GTCTC 3 cut(s) 377, 1021, 1188
BstMBI GATC 5 cut(s) 322, 809, 937, 1147, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 115, 1118, 1133
BstNI CCWGG 4 cut(s) 135, 206, 1218, 1485
BstNSI RCATGY 3 cut(s) 592, 700, 974
BstSCI CCNGG 5 cut(s) 133, 204, 1035, 1216, 1483
BstSLI GKGCMC 2 cut(s) 584, 886
BstV1I GCAGC 2 cut(s) 158, 161
BstV2I GAAGAC 1 cut(s) 1159
BstX2I RGATCY 1 cut(s) 809
BstXI CCANNNNNNTGG 4 cut(s) 109, 617, 1108, 1261
BstYI RGATCY 1 cut(s) 809
BsuI GTATCC 1 cut(s) 567
BtgI CCRYGG 2 cut(s) 1101, 1113
BtsCI GGATG 3 cut(s) 154, 940, 1390
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 8 cut(s) 24, 448, 560, 764, 795, 924, 1056, 1471
Cac8I GCNNGC 3 cut(s) 120, 607, 1481
CfoI GCGC 1 cut(s) 1121
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 5 cut(s) 242, 595, 882, 883, 1034
Csp6I GTAC 6 cut(s) 417, 439, 484, 565, 1375, 1490
CviAII CATG 9 cut(s) 389, 589, 617, 697, 814, 971, 1102, 1114, 1306
CviQI GTAC 6 cut(s) 417, 439, 484, 565, 1375, 1490
DdeI CTNAG 4 cut(s) 187, 199, 281, 1322
DpnI GATC 5 cut(s) 324, 811, 939, 1149, 1290
DpnII GATC 5 cut(s) 322, 809, 937, 1147, 1288
DraIII CACNNNGTG 1 cut(s) 284
EaeI YGGCCR 3 cut(s) 120, 490, 1110
Eam1104I CTCTTC 2 cut(s) 671, 894
EarI CTCTTC 2 cut(s) 671, 894
Eco130I CCWWGG 2 cut(s) 1101, 1113
Eco147I AGGCCT 1 cut(s) 204
Eco24I GRGCYC 3 cut(s) 212, 232, 886
Eco32I GATATC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 1080
EcoO109I RGGNCCY 1 cut(s) 883
EcoRII CCWGG 4 cut(s) 133, 204, 1216, 1483
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 1101, 1113
EcoT22I ATGCAT 1 cut(s) 976
EcoT38I GRGCYC 3 cut(s) 212, 232, 886
ErhI CCWWGG 2 cut(s) 1101, 1113
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 9 cut(s) 392, 592, 620, 700, 817, 974, 1105, 1117, 1309
FalI AAGNNNNNCTT 2 cut(s) 1151, 1183
FatI CATG 9 cut(s) 388, 588, 616, 696, 813, 970, 1101, 1113, 1305
FauI CCCGC 1 cut(s) 1155
Fnu4HI GCNGC 3 cut(s) 172, 175, 828
FokI GGATG 3 cut(s) 161, 947, 1377
FriOI GRGCYC 3 cut(s) 212, 232, 886
FseI GGCCGGCC 1 cut(s) 122
Fsp4HI GCNGC 3 cut(s) 172, 175, 828
FspBI CTAG 2 cut(s) 60, 893
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 3 cut(s) 172, 175, 828
GsaI CCCAGC 1 cut(s) 1451
GsuI CTGGAG 3 cut(s) 131, 378, 1219
HaeII RGCGCY 1 cut(s) 1122
HapII CCGG 7 cut(s) 119, 479, 493, 528, 1037, 1378, 1405
HhaI GCGC 1 cut(s) 1121
Hin1II CATG 9 cut(s) 392, 592, 620, 700, 817, 974, 1105, 1117, 1309
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HindIII AAGCTT 1 cut(s) 1043
HpaII CCGG 7 cut(s) 119, 479, 493, 528, 1037, 1378, 1405
HphI GGTGA 3 cut(s) 19, 367, 810
Hpy166II GTNNAC 3 cut(s) 37, 1312, 1490
Hpy188I TCNGA 7 cut(s) 595, 628, 845, 910, 1288, 1372, 1462
Hpy188III TCNNGA 9 cut(s) 60, 75, 94, 311, 395, 953, 1156, 1198, 1205
Hpy8I GTNNAC 3 cut(s) 37, 1312, 1490
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 5 cut(s) 59, 284, 615, 1220, 1404
HpyCH4III ACNGT 7 cut(s) 143, 443, 488, 564, 868, 1368, 1437
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 7 cut(s) 423, 669, 717, 784, 974, 992, 1467
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 1118, 1133
HpyF3I CTNAG 4 cut(s) 187, 199, 281, 1322
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 9 cut(s) 392, 592, 620, 700, 817, 974, 1105, 1117, 1309
HspAI GCGC 1 cut(s) 1119
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Kzo9I GATC 5 cut(s) 322, 809, 937, 1147, 1288
LmnI GCTCC 4 cut(s) 334, 397, 1053, 1097
Lsp1109I GCAGC 2 cut(s) 158, 161
LweI GCATC 1 cut(s) 983
MaeI CTAG 2 cut(s) 60, 893
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 6 cut(s) 349, 515, 816, 1174, 1235, 1454
MalI GATC 5 cut(s) 324, 811, 939, 1149, 1290
MboI GATC 5 cut(s) 322, 809, 937, 1147, 1288
MboII GAAGA 5 cut(s) 543, 688, 881, 1091, 1159
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 6 cut(s) 212, 232, 331, 584, 886, 1058
MlsI TGGCCA 1 cut(s) 1112
MluNI TGGCCA 1 cut(s) 1112
MlyI GAGTC 2 cut(s) 32, 1210
MmeI TCCRAC 4 cut(s) 384, 573, 912, 1242
Mox20I TGGCCA 1 cut(s) 1112
Mph1103I ATGCAT 1 cut(s) 976
MroNI GCCGGC 1 cut(s) 118
MscI TGGCCA 1 cut(s) 1112
MseI TTAA 4 cut(s) 474, 746, 966, 1041
MslI CAYNNNNRTG 2 cut(s) 615, 979
Msp20I TGGCCA 1 cut(s) 1112
MspA1I CMGCKG 1 cut(s) 800
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 7 cut(s) 119, 479, 493, 528, 1037, 1378, 1405
MspR9I CCNGG 5 cut(s) 135, 206, 1037, 1218, 1485
Mva1269I GAATGC 2 cut(s) 829, 994
MvaI CCWGG 4 cut(s) 135, 206, 1218, 1485
MwoI GCNNNNNNNGC 3 cut(s) 115, 1118, 1133
NaeI GCCGGC 1 cut(s) 120
NciI CCSGG 1 cut(s) 1037
NcoI CCATGG 2 cut(s) 1101, 1113
NdeII GATC 5 cut(s) 322, 809, 937, 1147, 1288
NgoMIV GCCGGC 1 cut(s) 118
NlaIII CATG 9 cut(s) 392, 592, 620, 700, 817, 974, 1105, 1117, 1309
NlaIV GGNNCC 3 cut(s) 884, 885, 1099
NmeAIII GCCGAG 2 cut(s) 601, 874
NmuCI GTSAC 4 cut(s) 349, 515, 816, 1174
NsiI ATGCAT 1 cut(s) 976
NspI RCATGY 3 cut(s) 592, 700, 974
PceI AGGCCT 1 cut(s) 204
PciI ACATGT 2 cut(s) 588, 696
PcsI WCGNNNNNNNCGW 1 cut(s) 946
PctI GAATGC 2 cut(s) 829, 994
PdiI GCCGGC 1 cut(s) 120
PfeI GAWTC 8 cut(s) 164, 367, 411, 740, 793, 899, 922, 956
PflFI GACNNNGTC 1 cut(s) 1316
PkrI GCNGC 3 cut(s) 173, 176, 829
PleI GAGTC 2 cut(s) 32, 1209
PpsI GAGTC 2 cut(s) 32, 1209
Ppu21I YACGTR 1 cut(s) 420
PscI ACATGT 2 cut(s) 588, 696
Psp6I CCWGG 4 cut(s) 133, 204, 1216, 1483
PspFI CCCAGC 1 cut(s) 1447
PspGI CCWGG 4 cut(s) 133, 204, 1216, 1483
PspN4I GGNNCC 3 cut(s) 884, 885, 1099
PspOMI GGGCCC 1 cut(s) 882
PspPI GGNCC 5 cut(s) 242, 595, 882, 883, 1034
PsrI GAACNNNNNNTAC 2 cut(s) 1318, 1350
PsuI RGATCY 1 cut(s) 809
PsyI GACNNNGTC 1 cut(s) 1316
RigI GGCCGGCC 1 cut(s) 122
RsaI GTAC 6 cut(s) 418, 440, 485, 566, 1376, 1491
RsaNI GTAC 6 cut(s) 417, 439, 484, 565, 1375, 1490
RseI CAYNNNNRTG 2 cut(s) 615, 979
SaqAI TTAA 4 cut(s) 474, 746, 966, 1041
SatI GCNGC 3 cut(s) 172, 175, 828
Sau3AI GATC 5 cut(s) 322, 809, 937, 1147, 1288
Sau96I GGNCC 5 cut(s) 242, 595, 882, 883, 1034
SchI GAGTC 2 cut(s) 32, 1210
ScrFI CCNGG 5 cut(s) 135, 206, 1037, 1218, 1485
SduI GDGCHC 6 cut(s) 212, 232, 331, 584, 886, 1058
SfaNI GCATC 1 cut(s) 983
SinI GGWCC 1 cut(s) 595
SmiMI CAYNNNNRTG 2 cut(s) 615, 979
SmlI CTYRAG 4 cut(s) 73, 92, 473, 1154
SmoI CTYRAG 4 cut(s) 73, 92, 473, 1154
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 3 cut(s) 800, 828, 1162
SspMI CTAG 2 cut(s) 60, 893
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 5 cut(s) 133, 204, 1035, 1216, 1483
StyI CCWWGG 2 cut(s) 1101, 1113
TaaI ACNGT 7 cut(s) 143, 443, 488, 564, 868, 1368, 1437
TaiI ACGT 1 cut(s) 422
TaqI TCGA 1 cut(s) 940
TatI WGTACW 2 cut(s) 438, 564
TauI GCSGC 1 cut(s) 830
TfiI GAWTC 8 cut(s) 164, 367, 411, 740, 793, 899, 922, 956
Tru1I TTAA 4 cut(s) 474, 746, 966, 1041
Tru9I TTAA 4 cut(s) 474, 746, 966, 1041
TscAI CASTG 8 cut(s) 24, 448, 567, 764, 795, 924, 1063, 1478
TseFI GTSAC 4 cut(s) 349, 515, 816, 1174
TseI GCWGC 2 cut(s) 171, 174
Tsp45I GTSAC 4 cut(s) 349, 515, 816, 1174
TspDTI ATGAA 3 cut(s) 303, 732, 1239
TspGWI ACGGA 1 cut(s) 938
TspRI CASTG 8 cut(s) 24, 448, 567, 764, 795, 924, 1063, 1478
Tth111I GACNNNGTC 1 cut(s) 1316
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 595
XapI RAATTY 5 cut(s) 214, 306, 342, 872, 1409
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 3 cut(s) 592, 700, 974
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XspI CTAG 2 cut(s) 60, 893
Zsp2I ATGCAT 1 cut(s) 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.