pycom12g16900

Protein trichome birefringence-like 35

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
19187664 .. 19190576
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16900.1

Sequence Viewer

Length: 1344 bp
ATGCAGCAGTCGCAGAGGTGGAAGTGGAACAAGAAGAAAACCCATGTTCCTGCGCTGGTGTTCTTCTTCTTTCTGTTCATAGTTTTCTCGAATCTCCACAGCCAACGCAGAATTCTGCAAATTCAAGAGAGCCCTGATCGCGTTTATCACCGTCAAGATTCAGTCACTTTTGTAAAGCCAAATCTTTTCACCCAGCAAAACCATGCTCCAGAGGTTTTGGATAGATTCAGTACATGCAACTCCACCAGAGAGTACAGTGGTCAGAAAATTCTGTGGACTGACCGGACGCCGGAGTACGGTCACCGGAGAGAGAGTTTGGAGAGGTGTGATGTGTTTTCCGGCAAATGGGTGTTTGATAATGCATCGTATCCGCTGTACAAGGAGTTGGAGTGCCCTTACATGTCGGACCAGTTGTCCTGTCACAAGCATGGGAGGCCTGATTTGGGGTACCAATACTGGAGATGGCAACCCCACAATTGCAACTTGAAGAGATGGAATGTGACTGAAATGTGGGAGAAGTTGAGAGGCAAAAGGCTAATGTTTGTAGGGGATTCATTAAACCGAGGGCAATGGATATCAATGGTCTGTTTGTTACAATCTGTGATTCCTTCAGATAAGAGATCAATGTCACCGAACGCTGAACTTACTATTTTCAAAGCAGAGGAATATAATGCTACTGTGGAATTTCTCTGGGCTCCGCTTCTTGTAGAATCTAATTCTGATGATCGATCAGTGAATCACCGAACATCCGATCGGATAATCCGACCAGATTCAGTTCTTAAGCATGCATCAATATGGGAGAATGCTGATATATTGATATTCAATTCCTACCTGTGGTGGCGACAAGGCCCAGTTAAGCTGATATGGAGCGAGGAAGCAAACGGTGTTTGTGAAGAAGTAGACGGCCTTGGAGCCATGGAGTTGGCCATGGGGGCTTGGGCAGACTGGGCTTCTAAGGTCAATCCCCTCAAGAAGCAGGTCTTCTTCATCACAATGTCTCCTACACATCTCTGGAGTCGAGAATGGAAACAAGAAAGTGAAGGTAATTGTTACAGTGAGAAATCCCCCATCGACTTGGAGGGCTACTGGGGAAGTGGTTCTGACCTGCCTACCATGAGCATGGTGGAGACGGTCCTCAGCAAGTTGAGTTCCAAGGTTTCTGTTATCAACATTACCCAATTATCGGAGTACCGGAAAGATGGTCACCCTTCCATTTACCGCAAATTCTGGGAGCCACTGAAGCCTGAACAATTGTCTAACCCCACGAGTTACTCGGATTGCATACACTGGTGCTTGCCTGGTGTACCTGACGTATGGAACGAGTTGCTATTCCAATTCTTGTAA

Protein Analysis

448

Amino Acids

52.58

Weight (kDa)

6.9

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 107 - 161 1e-23 PMR5 N terminal Domain
PC-Esterase PF13839 163 - 445 9.6e-81 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 967, 1113
Acc65I GGTACC 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 447
AccI GTMKAC 1 cut(s) 900
AccII CGCG 1 cut(s) 141
AciI CCGC 3 cut(s) 371, 698, 1219
AcoI YGGCCR 1 cut(s) 924
AcsI RAATTY 5 cut(s) 111, 120, 267, 683, 1223
AcuI CTGAAG 2 cut(s) 594, 1259
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 7 cut(s) 232, 254, 296, 377, 449, 1190, 1305
AfiI CCNNNNNNNGG 6 cut(s) 289, 296, 345, 443, 834, 1183
AflII CTTAAG 1 cut(s) 779
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 4 cut(s) 125, 487, 655, 823
AhdI GACNNNNNGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 1 cut(s) 859
AluI AGCT 1 cut(s) 859
Alw26I GTCTC 2 cut(s) 1002, 1121
AoxI GGCC 4 cut(s) 434, 847, 904, 924
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 5 cut(s) 111, 120, 267, 683, 1223
Asp700I GAANNNNTTC 1 cut(s) 1096
Asp718I GGTACC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 406, 848, 1132
AsuHPI GGTGA 6 cut(s) 140, 181, 293, 621, 731, 1196
AvaII GGWCC 2 cut(s) 406, 1132
BaeGI GKGCMC 1 cut(s) 395
BalI TGGCCA 1 cut(s) 926
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 2 cut(s) 134, 697
BauI CACGAG 1 cut(s) 1264
BbsI GAAGAC 1 cut(s) 973
BbvCI CCTCAGC 1 cut(s) 1136
BbvI GCAGC 1 cut(s) 16
BccI CCATC 4 cut(s) 456, 486, 1076, 1193
BceAI ACGGC 1 cut(s) 919
BciT130I CCWGG 1 cut(s) 1299
BciVI GTATCC 1 cut(s) 378
BcoDI GTCTC 2 cut(s) 1002, 1121
BfrI CTTAAG 1 cut(s) 779
BfuAI ACCTGC 2 cut(s) 967, 1113
BfuI GTATCC 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 932
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 1299
Bme18I GGWCC 2 cut(s) 406, 1132
BmeRI GACNNNNNGTC 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 406, 848, 1132
BmiI GGNNCC 4 cut(s) 449, 696, 913, 1233
BmrFI CCNGG 1 cut(s) 1299
BmrI ACTGGG 3 cut(s) 845, 955, 1096
BmsI GCATC 2 cut(s) 371, 797
BmuI ACTGGG 3 cut(s) 845, 955, 1096
BpiI GAAGAC 1 cut(s) 973
BpmI CTGGAG 3 cut(s) 192, 478, 1033
Bpu10I CCTNAGC 1 cut(s) 1136
BpuEI CTTGAG 1 cut(s) 953
Bsa29I ATCGAT 1 cut(s) 727
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 5 cut(s) 562, 907, 915, 927, 1152
BsaWI WCCGGW 3 cut(s) 282, 303, 1191
BsaXI ACNNNNNCTCC 6 cut(s) 298, 328, 374, 404, 982, 1012
Bsc4I CCNNNNNNNGG 6 cut(s) 289, 296, 345, 443, 834, 1183
Bse1I ACTGG 6 cut(s) 409, 461, 851, 950, 1091, 1292
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 1299
BseCI ATCGAT 1 cut(s) 727
BseDI CCNNGG 5 cut(s) 562, 907, 915, 927, 1152
BseGI GGATG 1 cut(s) 746
BseLI CCNNNNNNNGG 6 cut(s) 289, 296, 345, 443, 834, 1183
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 1150
BseNI ACTGG 6 cut(s) 409, 461, 851, 950, 1091, 1292
BseSI GKGCMC 1 cut(s) 395
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 754
BshFI GGCC 4 cut(s) 436, 849, 906, 926
BshNI GGYRCC 1 cut(s) 447
BshVI ATCGAT 1 cut(s) 727
BsiEI CGRYCG 1 cut(s) 754
BsiSI CCGG 5 cut(s) 283, 290, 304, 339, 1192
BslI CCNNNNNNNGG 6 cut(s) 289, 296, 345, 443, 834, 1183
BsmAI GTCTC 2 cut(s) 1002, 1121
BsmBI CGTCTC 1 cut(s) 1121
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 4 cut(s) 436, 849, 906, 926
Bsp1286I GDGCHC 3 cut(s) 134, 395, 697
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 5 cut(s) 136, 620, 724, 728, 751
Bsp19I CCATGG 2 cut(s) 915, 927
BspACI CCGC 3 cut(s) 371, 698, 1219
BspANI GGCC 4 cut(s) 436, 849, 906, 926
BspCNI CTCAG 1 cut(s) 1149
BspDI ATCGAT 1 cut(s) 727
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 4 cut(s) 449, 696, 913, 1233
BspMI ACCTGC 2 cut(s) 967, 1113
BspT107I GGYRCC 1 cut(s) 447
BspTI CTTAAG 1 cut(s) 779
BsrDI GCAATG 1 cut(s) 575
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 6 cut(s) 409, 461, 851, 950, 1091, 1292
BssECI CCNNGG 5 cut(s) 562, 907, 915, 927, 1152
BssMI GATC 5 cut(s) 136, 620, 724, 728, 751
BssNI GRCGYC 1 cut(s) 287
BssSI CACGAG 1 cut(s) 1264
BssT1I CCWWGG 4 cut(s) 907, 915, 927, 1152
Bst2BI CACGAG 1 cut(s) 1264
Bst2UI CCWGG 1 cut(s) 1299
Bst4CI ACNGT 7 cut(s) 152, 257, 299, 679, 884, 1055, 1132
Bst6I CTCTTC 1 cut(s) 482
BstACI GRCGYC 1 cut(s) 287
BstAFI CTTAAG 1 cut(s) 779
BstAUI TGTACA 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 786, 1295
BstDEI CTNAG 2 cut(s) 954, 1136
BstDSI CCRYGG 2 cut(s) 915, 927
BstEII GGTNACC 2 cut(s) 299, 1202
BstF5I GGATG 1 cut(s) 746
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 5 cut(s) 139, 623, 727, 731, 754
BstMAI GTCTC 2 cut(s) 1002, 1121
BstMBI GATC 5 cut(s) 136, 620, 724, 728, 751
BstMCI CGRYCG 1 cut(s) 754
BstMWI GCNNNNNNNGC 6 cut(s) 10, 138, 433, 932, 947, 1240
BstNI CCWGG 1 cut(s) 1299
BstNSI RCATGY 3 cut(s) 237, 403, 788
BstPI GGTNACC 2 cut(s) 299, 1202
BstSCI CCNGG 1 cut(s) 1297
BstSLI GKGCMC 1 cut(s) 395
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 973
BstXI CCANNNNNNTGG 3 cut(s) 922, 1075, 1120
Bsu15I ATCGAT 1 cut(s) 727
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 4 cut(s) 436, 849, 906, 926
BsuTUI ATCGAT 1 cut(s) 727
BtgI CCRYGG 2 cut(s) 915, 927
BtsCI GGATG 1 cut(s) 746
BtsIMutI CAGTG 5 cut(s) 262, 738, 1060, 1235, 1285
BveI ACCTGC 2 cut(s) 967, 1113
Cac8I GCNNGC 2 cut(s) 786, 1295
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 406, 848, 1132
ClaI ATCGAT 1 cut(s) 727
CseI GACGC 1 cut(s) 295
Csp6I GTAC 7 cut(s) 231, 253, 295, 376, 448, 1189, 1304
CviQI GTAC 7 cut(s) 231, 253, 295, 376, 448, 1189, 1304
DdeI CTNAG 2 cut(s) 954, 1136
DpnI GATC 5 cut(s) 138, 622, 726, 730, 753
DpnII GATC 5 cut(s) 136, 620, 724, 728, 751
DriI GACNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 924
Eam1104I CTCTTC 1 cut(s) 482
Eam1105I GACNNNNNGTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 482
Eco130I CCWWGG 4 cut(s) 907, 915, 927, 1152
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 134, 697
Eco32I GATATC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 406, 1132
Eco57I CTGAAG 2 cut(s) 594, 1259
Eco91I GGTNACC 2 cut(s) 299, 1202
EcoO65I GGTNACC 2 cut(s) 299, 1202
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 1297
EcoRV GATATC 1 cut(s) 576
EcoT14I CCWWGG 4 cut(s) 907, 915, 927, 1152
EcoT22I ATGCAT 2 cut(s) 364, 790
EcoT38I GRGCYC 2 cut(s) 134, 697
ErhI CCWWGG 4 cut(s) 907, 915, 927, 1152
Esp3I CGTCTC 1 cut(s) 1121
FalI AAGNNNNNCTT 2 cut(s) 965, 997
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 733
FriOI GRGCYC 2 cut(s) 134, 697
Fsp4HI GCNGC 1 cut(s) 5
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 3 cut(s) 192, 478, 1033
HaeIII GGCC 4 cut(s) 436, 849, 906, 926
HapII CCGG 5 cut(s) 283, 290, 304, 339, 1192
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 287
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 9 cut(s) 91, 158, 225, 551, 604, 710, 736, 770, 1015
HpaII CCGG 5 cut(s) 283, 290, 304, 339, 1192
HphI GGTGA 6 cut(s) 140, 181, 293, 621, 731, 1196
Hpy166II GTNNAC 3 cut(s) 276, 901, 1304
Hpy188III TCNNGA 7 cut(s) 88, 125, 155, 209, 970, 1012, 1019
Hpy8I GTNNAC 3 cut(s) 276, 901, 1304
HpyAV CCTTC 3 cut(s) 618, 1034, 1218
HpyCH4III ACNGT 7 cut(s) 152, 257, 299, 679, 884, 1055, 1132
HpyCH4IV ACGT 1 cut(s) 1311
HpyCH4V TGCA 7 cut(s) 4, 118, 237, 362, 480, 788, 1281
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 138, 433, 932, 947, 1240
HpyF3I CTNAG 2 cut(s) 954, 1136
HpySE526I ACGT 1 cut(s) 1311
Hsp92I GRCGYC 1 cut(s) 287
HspAI GCGC 1 cut(s) 53
KpnI GGTACC 1 cut(s) 451
Kzo9I GATC 5 cut(s) 136, 620, 724, 728, 751
LmnI GCTCC 5 cut(s) 211, 700, 867, 911, 1231
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 371, 797
MaeII ACGT 1 cut(s) 1311
MaeIII GTNAC 9 cut(s) 163, 299, 419, 499, 591, 627, 1049, 1202, 1268
MalI GATC 5 cut(s) 138, 622, 726, 730, 753
MboI GATC 5 cut(s) 136, 620, 724, 728, 751
MboII GAAGA 7 cut(s) 46, 55, 58, 499, 905, 973, 976
MfeI CAATTG 2 cut(s) 475, 1250
MhlI GDGCHC 3 cut(s) 134, 395, 697
MlsI TGGCCA 1 cut(s) 926
MluNI TGGCCA 1 cut(s) 926
MlyI GAGTC 1 cut(s) 1024
MmeI TCCRAC 3 cut(s) 366, 384, 787
Mox20I TGGCCA 1 cut(s) 926
Mph1103I ATGCAT 2 cut(s) 364, 790
MroXI GAANNNNTTC 1 cut(s) 1096
MscI TGGCCA 1 cut(s) 926
MseI TTAA 3 cut(s) 557, 780, 855
MslI CAYNNNNRTG 4 cut(s) 426, 793, 992, 1118
Msp20I TGGCCA 1 cut(s) 926
MspA1I CMGCKG 1 cut(s) 373
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 5 cut(s) 283, 290, 304, 339, 1192
MspR9I CCNGG 1 cut(s) 1299
MunI CAATTG 2 cut(s) 475, 1250
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 1 cut(s) 1299
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 6 cut(s) 10, 138, 433, 932, 947, 1240
NcoI CCATGG 2 cut(s) 915, 927
NdeII GATC 5 cut(s) 136, 620, 724, 728, 751
NlaIV GGNNCC 4 cut(s) 449, 696, 913, 1233
NmuCI GTSAC 6 cut(s) 163, 299, 419, 499, 627, 1202
NsiI ATGCAT 2 cut(s) 364, 790
NspI RCATGY 3 cut(s) 237, 403, 788
PaeI GCATGC 1 cut(s) 788
PceI AGGCCT 1 cut(s) 436
PciI ACATGT 1 cut(s) 399
PcsI WCGNNNNNNNCGW 2 cut(s) 760, 1317
PctI GAATGC 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 1096
PfeI GAWTC 8 cut(s) 91, 158, 225, 551, 604, 710, 736, 770
PkrI GCNGC 1 cut(s) 6
Ple19I CGATCG 1 cut(s) 754
PleI GAGTC 1 cut(s) 1023
PpsI GAGTC 1 cut(s) 1023
PscI ACATGT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 1297
PspEI GGTNACC 2 cut(s) 299, 1202
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 1297
PspN4I GGNNCC 4 cut(s) 449, 696, 913, 1233
PspPI GGNCC 3 cut(s) 406, 848, 1132
PvuI CGATCG 1 cut(s) 754
RsaI GTAC 7 cut(s) 232, 254, 296, 377, 449, 1190, 1305
RsaNI GTAC 7 cut(s) 231, 253, 295, 376, 448, 1189, 1304
RseI CAYNNNNRTG 4 cut(s) 426, 793, 992, 1118
SaqAI TTAA 3 cut(s) 557, 780, 855
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 5 cut(s) 136, 620, 724, 728, 751
Sau96I GGNCC 3 cut(s) 406, 848, 1132
SchI GAGTC 1 cut(s) 1024
ScrFI CCNGG 1 cut(s) 1299
SduI GDGCHC 3 cut(s) 134, 395, 697
SfaNI GCATC 2 cut(s) 371, 797
SinI GGWCC 2 cut(s) 406, 1132
SmiMI CAYNNNNRTG 4 cut(s) 426, 793, 992, 1118
SmlI CTYRAG 2 cut(s) 779, 968
SmoI CTYRAG 2 cut(s) 779, 968
SphI GCATGC 1 cut(s) 788
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 3 cut(s) 371, 698, 1219
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 1297
StyI CCWWGG 4 cut(s) 907, 915, 927, 1152
TaaI ACNGT 7 cut(s) 152, 257, 299, 679, 884, 1055, 1132
TaiI ACGT 1 cut(s) 1314
TaqI TCGA 4 cut(s) 89, 727, 1018, 1071
TatI WGTACW 3 cut(s) 230, 252, 375
TfiI GAWTC 8 cut(s) 91, 158, 225, 551, 604, 710, 736, 770
Tru1I TTAA 3 cut(s) 557, 780, 855
Tru9I TTAA 3 cut(s) 557, 780, 855
TscAI CASTG 5 cut(s) 262, 738, 1060, 1242, 1292
TseFI GTSAC 6 cut(s) 163, 299, 419, 499, 627, 1202
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 6 cut(s) 163, 299, 419, 499, 627, 1202
TspDTI ATGAA 3 cut(s) 67, 543, 976
TspRI CASTG 5 cut(s) 262, 738, 1060, 1242, 1292
Vha464I CTTAAG 1 cut(s) 779
VpaK11BI GGWCC 2 cut(s) 406, 1132
XapI RAATTY 5 cut(s) 111, 120, 267, 683, 1223
XceI RCATGY 3 cut(s) 237, 403, 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 1 cut(s) 1096
Zsp2I ATGCAT 2 cut(s) 364, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.