Protein trichome birefringence-like 35
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G01620 AT5G01620 AT5G01620 |
| fragaria_vesca | FvH4_6g10720 FvH4_6g10720 FvH4_6g10720 FvH4_6g10720 |
| malus_domestica | MD04G1165100.v1.1 MD12G1179100.v1.1 |
| prunus_persica | Prupe.6G284200_v2.0.a1 |
| pyrus_communis | pycom04g14720 pycom12g16900 |
| rosa_chinensis | RchiOBHm_Chr3g0461751 |
| rosa_laevigata | RLG00000024903 |
| rosa_multiflora | Rmu_sc0000619.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00417990 |
| rosa_rugosa | Rorug03G0053200 |
| rosa_samantha | Rh3AG111400 Rh3BG114400 Rh3CG116700 Rh3DG116400 |
| rosa_wichuraiana | Rw3G009430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 688 |
| AccBSI | CCGCTC | 1 cut(s) | 635 |
| AccI | GTMKAC | 1 cut(s) | 1320 |
| AciI | CCGC | 4 cut(s) | 284, 365, 633, 967 |
| AclWI | GGATC | 2 cut(s) | 609, 947 |
| AcoI | YGGCCR | 2 cut(s) | 295, 915 |
| AcsI | RAATTY | 5 cut(s) | 105, 677, 871, 1138, 1214 |
| AcuI | CTGAAG | 1 cut(s) | 885 |
| AcyI | GRCGYC | 1 cut(s) | 689 |
| AfaI | GTAC | 7 cut(s) | 39, 217, 239, 371, 768, 1181, 1296 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 290, 339, 655, 825, 1209 |
| AflII | CTTAAG | 1 cut(s) | 1229 |
| AflIII | ACRYGT | 2 cut(s) | 393, 501 |
| AgsI | TTSAA | 4 cut(s) | 110, 481, 814, 1143 |
| AjnI | CCWGG | 3 cut(s) | 257, 1021, 1288 |
| AluBI | AGCT | 1 cut(s) | 850 |
| AluI | AGCT | 1 cut(s) | 850 |
| Alw21I | GWGCWC | 1 cut(s) | 863 |
| Alw26I | GTCTC | 2 cut(s) | 826, 993 |
| AlwI | GGATC | 2 cut(s) | 609, 947 |
| AoxI | GGCC | 4 cut(s) | 295, 408, 838, 915 |
| ApeKI | GCWGC | 1 cut(s) | 93 |
| ApoI | RAATTY | 5 cut(s) | 105, 677, 871, 1138, 1214 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 739, 771, 1177, 1209 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 285 |
| AspLEI | GCGC | 1 cut(s) | 691 |
| AspS9I | GGNCC | 1 cut(s) | 839 |
| AsuC2I | CCSGG | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 2 cut(s) | 166, 615 |
| BalI | TGGCCA | 1 cut(s) | 917 |
| BanI | GGYRCC | 1 cut(s) | 688 |
| BbsI | GAAGAC | 2 cut(s) | 61, 964 |
| Bbv12I | GWGCWC | 1 cut(s) | 863 |
| BbvI | GCAGC | 1 cut(s) | 105 |
| BccI | CCATC | 6 cut(s) | 144, 186, 450, 480, 887, 1184 |
| BciT130I | CCWGG | 3 cut(s) | 259, 1023, 1290 |
| BcnI | CCSGG | 1 cut(s) | 299 |
| BcoDI | GTCTC | 2 cut(s) | 826, 993 |
| BfaI | CTAG | 1 cut(s) | 698 |
| BfoI | RGCGCY | 1 cut(s) | 692 |
| BfrI | CTTAAG | 1 cut(s) | 1229 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 923 |
| BisI | GCNGC | 2 cut(s) | 94, 633 |
| BlsI | GCNGC | 2 cut(s) | 95, 634 |
| BmcAI | AGTACT | 1 cut(s) | 768 |
| Bme1390I | CCNGG | 4 cut(s) | 259, 299, 1023, 1290 |
| BmgT120I | GGNCC | 1 cut(s) | 839 |
| BmiI | GGNNCC | 3 cut(s) | 690, 904, 1007 |
| BmrFI | CCNGG | 4 cut(s) | 259, 299, 1023, 1290 |
| BmrI | ACTGGG | 2 cut(s) | 836, 1087 |
| BmsI | GCATC | 1 cut(s) | 788 |
| BmuI | ACTGGG | 2 cut(s) | 836, 1087 |
| BpiI | GAAGAC | 2 cut(s) | 61, 964 |
| BpmI | CTGGAG | 2 cut(s) | 261, 1024 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1236 |
| BpuEI | CTTGAG | 1 cut(s) | 944 |
| BpuMI | CCSGG | 1 cut(s) | 299 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1194 |
| BsaHI | GRCGYC | 1 cut(s) | 689 |
| BsaJI | CCNNGG | 3 cut(s) | 298, 906, 918 |
| BsaWI | WCCGGW | 1 cut(s) | 1209 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 973, 1003 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 290, 339, 655, 825, 1209 |
| Bse1I | ACTGG | 6 cut(s) | 45, 146, 403, 842, 1082, 1283 |
| Bse3DI | GCAATG | 1 cut(s) | 569 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1194 |
| BseBI | CCWGG | 3 cut(s) | 259, 1023, 1290 |
| BseDI | CCNNGG | 3 cut(s) | 298, 906, 918 |
| BseGI | GGATG | 1 cut(s) | 1195 |
| BseJI | GATNNNNATC | 1 cut(s) | 1194 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 290, 339, 655, 825, 1209 |
| BseMI | GCAATG | 1 cut(s) | 569 |
| BseMII | CTCAG | 2 cut(s) | 1141, 1227 |
| BseNI | ACTGG | 6 cut(s) | 45, 146, 403, 842, 1082, 1283 |
| BseRI | GAGGAG | 1 cut(s) | 120 |
| BseXI | GCAGC | 1 cut(s) | 105 |
| BshFI | GGCC | 4 cut(s) | 297, 410, 840, 917 |
| BshNI | GGYRCC | 1 cut(s) | 688 |
| BsiHKAI | GWGCWC | 1 cut(s) | 863 |
| BsiSI | CCGG | 3 cut(s) | 298, 333, 1210 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 290, 339, 655, 825, 1209 |
| BsmAI | GTCTC | 2 cut(s) | 826, 993 |
| BsmI | GAATGC | 2 cut(s) | 389, 799 |
| BsnI | GGCC | 4 cut(s) | 297, 410, 840, 917 |
| Bsp1286I | GDGCHC | 1 cut(s) | 863 |
| Bsp1407I | TGTACA | 1 cut(s) | 369 |
| Bsp143I | GATC | 5 cut(s) | 121, 614, 742, 952, 1093 |
| Bsp19I | CCATGG | 2 cut(s) | 906, 918 |
| BspACI | CCGC | 4 cut(s) | 284, 365, 633, 967 |
| BspANI | GGCC | 4 cut(s) | 297, 410, 840, 917 |
| BspCNI | CTCAG | 2 cut(s) | 1140, 1228 |
| BspLI | GGNNCC | 3 cut(s) | 690, 904, 1007 |
| BspPI | GGATC | 2 cut(s) | 609, 947 |
| BspT107I | GGYRCC | 1 cut(s) | 688 |
| BspTI | CTTAAG | 1 cut(s) | 1229 |
| BsrBI | CCGCTC | 1 cut(s) | 635 |
| BsrDI | GCAATG | 1 cut(s) | 569 |
| BsrGI | TGTACA | 1 cut(s) | 369 |
| BsrI | ACTGG | 6 cut(s) | 45, 146, 403, 842, 1082, 1283 |
| BssECI | CCNNGG | 3 cut(s) | 298, 906, 918 |
| BssMI | GATC | 5 cut(s) | 121, 614, 742, 952, 1093 |
| BssNAI | GTATAC | 1 cut(s) | 1321 |
| BssNI | GRCGYC | 1 cut(s) | 689 |
| BssT1I | CCWWGG | 2 cut(s) | 906, 918 |
| Bst1107I | GTATAC | 1 cut(s) | 1321 |
| Bst2UI | CCWGG | 3 cut(s) | 259, 1023, 1290 |
| Bst4CI | ACNGT | 5 cut(s) | 242, 293, 673, 1046, 1173 |
| Bst6I | CTCTTC | 2 cut(s) | 476, 699 |
| BstACI | GRCGYC | 1 cut(s) | 689 |
| BstAFI | CTTAAG | 1 cut(s) | 1229 |
| BstAUI | TGTACA | 1 cut(s) | 369 |
| BstC8I | GCNNGC | 2 cut(s) | 412, 1286 |
| BstDEI | CTNAG | 2 cut(s) | 1127, 1236 |
| BstDSI | CCRYGG | 2 cut(s) | 906, 918 |
| BstF5I | GGATG | 1 cut(s) | 1195 |
| BstH2I | RGCGCY | 1 cut(s) | 692 |
| BstHHI | GCGC | 1 cut(s) | 691 |
| BstKTI | GATC | 5 cut(s) | 124, 617, 745, 955, 1096 |
| BstMAI | GTCTC | 2 cut(s) | 826, 993 |
| BstMBI | GATC | 5 cut(s) | 121, 614, 742, 952, 1093 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 923, 938 |
| BstNI | CCWGG | 3 cut(s) | 259, 1023, 1290 |
| BstNSI | RCATGY | 4 cut(s) | 222, 397, 505, 779 |
| BstSCI | CCNGG | 4 cut(s) | 257, 297, 1021, 1288 |
| BstV1I | GCAGC | 1 cut(s) | 105 |
| BstV2I | GAAGAC | 2 cut(s) | 61, 964 |
| BstX2I | RGATCY | 1 cut(s) | 614 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 422, 913, 1066 |
| BstYI | RGATCY | 1 cut(s) | 614 |
| BstZ17I | GTATAC | 1 cut(s) | 1321 |
| BsuRI | GGCC | 4 cut(s) | 297, 410, 840, 917 |
| BtgI | CCRYGG | 2 cut(s) | 906, 918 |
| BtsCI | GGATG | 1 cut(s) | 1195 |
| BtsIMutI | CAGTG | 5 cut(s) | 247, 600, 861, 1051, 1276 |
| Cac8I | GCNNGC | 2 cut(s) | 412, 1286 |
| CfoI | GCGC | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 1 cut(s) | 839 |
| Csp6I | GTAC | 7 cut(s) | 38, 216, 238, 370, 767, 1180, 1295 |
| CviQI | GTAC | 7 cut(s) | 38, 216, 238, 370, 767, 1180, 1295 |
| DdeI | CTNAG | 2 cut(s) | 1127, 1236 |
| DinI | GGCGCC | 1 cut(s) | 690 |
| DpnI | GATC | 5 cut(s) | 123, 616, 744, 954, 1095 |
| DpnII | GATC | 5 cut(s) | 121, 614, 742, 952, 1093 |
| EaeI | YGGCCR | 2 cut(s) | 295, 915 |
| Eam1104I | CTCTTC | 2 cut(s) | 476, 699 |
| EarI | CTCTTC | 2 cut(s) | 476, 699 |
| Eco130I | CCWWGG | 2 cut(s) | 906, 918 |
| Eco32I | GATATC | 1 cut(s) | 570 |
| Eco57I | CTGAAG | 1 cut(s) | 885 |
| EcoRI | GAATTC | 1 cut(s) | 871 |
| EcoRII | CCWGG | 3 cut(s) | 257, 1021, 1288 |
| EcoRV | GATATC | 1 cut(s) | 570 |
| EcoT14I | CCWWGG | 2 cut(s) | 906, 918 |
| EcoT22I | ATGCAT | 1 cut(s) | 781 |
| EgeI | GGCGCC | 1 cut(s) | 690 |
| EheI | GGCGCC | 1 cut(s) | 690 |
| ErhI | CCWWGG | 2 cut(s) | 906, 918 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 956, 988 |
| FauI | CCCGC | 1 cut(s) | 960 |
| FblI | GTMKAC | 1 cut(s) | 1320 |
| Fnu4HI | GCNGC | 2 cut(s) | 94, 633 |
| FokI | GGATG | 1 cut(s) | 1182 |
| Fsp4HI | GCNGC | 2 cut(s) | 94, 633 |
| FspBI | CTAG | 1 cut(s) | 698 |
| GlaI | GCGC | 1 cut(s) | 690 |
| GluI | GCNGC | 2 cut(s) | 94, 633 |
| GsuI | CTGGAG | 2 cut(s) | 261, 1024 |
| HaeII | RGCGCY | 1 cut(s) | 692 |
| HaeIII | GGCC | 4 cut(s) | 297, 410, 840, 917 |
| HapII | CCGG | 3 cut(s) | 298, 333, 1210 |
| HhaI | GCGC | 1 cut(s) | 691 |
| Hin1I | GRCGYC | 1 cut(s) | 689 |
| Hin6I | GCGC | 1 cut(s) | 689 |
| HinP1I | GCGC | 1 cut(s) | 689 |
| HindIII | AAGCTT | 1 cut(s) | 848 |
| HinfI | GANTC | 8 cut(s) | 166, 210, 274, 377, 545, 598, 704, 761 |
| HpaII | CCGG | 3 cut(s) | 298, 333, 1210 |
| HphI | GGTGA | 2 cut(s) | 166, 615 |
| Hpy166II | GTNNAC | 4 cut(s) | 727, 1117, 1295, 1321 |
| Hpy188I | TCNGA | 9 cut(s) | 273, 382, 400, 433, 650, 715, 1093, 1177, 1267 |
| Hpy188III | TCNNGA | 5 cut(s) | 110, 278, 758, 961, 1003 |
| Hpy8I | GTNNAC | 4 cut(s) | 727, 1117, 1295, 1321 |
| HpyAV | CCTTC | 3 cut(s) | 420, 1025, 1209 |
| HpyCH4III | ACNGT | 5 cut(s) | 242, 293, 673, 1046, 1173 |
| HpyCH4IV | ACGT | 1 cut(s) | 1122 |
| HpyCH4V | TGCA | 7 cut(s) | 103, 222, 474, 589, 779, 797, 1272 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 923, 938 |
| HpyF3I | CTNAG | 2 cut(s) | 1127, 1236 |
| HpySE526I | ACGT | 1 cut(s) | 1122 |
| Hsp92I | GRCGYC | 1 cut(s) | 689 |
| HspAI | GCGC | 1 cut(s) | 689 |
| KasI | GGCGCC | 1 cut(s) | 688 |
| Kzo9I | GATC | 5 cut(s) | 121, 614, 742, 952, 1093 |
| LmnI | GCTCC | 4 cut(s) | 133, 858, 902, 1005 |
| Lsp1109I | GCAGC | 1 cut(s) | 105 |
| LweI | GCATC | 1 cut(s) | 788 |
| MaeI | CTAG | 1 cut(s) | 698 |
| MaeII | ACGT | 1 cut(s) | 1122 |
| MaeIII | GTNAC | 6 cut(s) | 148, 190, 621, 979, 1040, 1259 |
| MalI | GATC | 5 cut(s) | 123, 616, 744, 954, 1095 |
| MbiI | CCGCTC | 1 cut(s) | 635 |
| MboI | GATC | 5 cut(s) | 121, 614, 742, 952, 1093 |
| MboII | GAAGA | 8 cut(s) | 43, 61, 493, 686, 752, 896, 964, 967 |
| MfeI | CAATTG | 1 cut(s) | 1036 |
| MflI | RGATCY | 1 cut(s) | 614 |
| MhlI | GDGCHC | 1 cut(s) | 863 |
| MlsI | TGGCCA | 1 cut(s) | 917 |
| MluNI | TGGCCA | 1 cut(s) | 917 |
| Mly113I | GGCGCC | 1 cut(s) | 689 |
| MlyI | GAGTC | 1 cut(s) | 268 |
| Mox20I | TGGCCA | 1 cut(s) | 917 |
| Mph1103I | ATGCAT | 1 cut(s) | 781 |
| MroXI | GAANNNNTTC | 1 cut(s) | 285 |
| MscI | TGGCCA | 1 cut(s) | 917 |
| MseI | TTAA | 5 cut(s) | 551, 771, 846, 1136, 1230 |
| MslI | CAYNNNNRTG | 2 cut(s) | 420, 784 |
| Msp20I | TGGCCA | 1 cut(s) | 917 |
| MspA1I | CMGCKG | 1 cut(s) | 367 |
| MspCI | CTTAAG | 1 cut(s) | 1229 |
| MspI | CCGG | 3 cut(s) | 298, 333, 1210 |
| MspR9I | CCNGG | 4 cut(s) | 259, 299, 1023, 1290 |
| MunI | CAATTG | 1 cut(s) | 1036 |
| Mva1269I | GAATGC | 2 cut(s) | 389, 799 |
| MvaI | CCWGG | 3 cut(s) | 259, 1023, 1290 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 923, 938 |
| NarI | GGCGCC | 1 cut(s) | 689 |
| NciI | CCSGG | 1 cut(s) | 299 |
| NcoI | CCATGG | 2 cut(s) | 906, 918 |
| NdeII | GATC | 5 cut(s) | 121, 614, 742, 952, 1093 |
| NlaIV | GGNNCC | 3 cut(s) | 690, 904, 1007 |
| NmeAIII | GCCGAG | 1 cut(s) | 1034 |
| NmuCI | GTSAC | 3 cut(s) | 148, 621, 979 |
| NsiI | ATGCAT | 1 cut(s) | 781 |
| NspI | RCATGY | 4 cut(s) | 222, 397, 505, 779 |
| PciI | ACATGT | 2 cut(s) | 393, 501 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 751 |
| PctI | GAATGC | 2 cut(s) | 389, 799 |
| PdmI | GAANNNNTTC | 1 cut(s) | 285 |
| PfeI | GAWTC | 7 cut(s) | 166, 210, 377, 545, 598, 704, 761 |
| PflFI | GACNNNGTC | 1 cut(s) | 1121 |
| PkrI | GCNGC | 2 cut(s) | 95, 634 |
| PleI | GAGTC | 1 cut(s) | 268 |
| PluTI | GGCGCC | 1 cut(s) | 692 |
| PpsI | GAGTC | 1 cut(s) | 268 |
| PscI | ACATGT | 2 cut(s) | 393, 501 |
| Psp6I | CCWGG | 3 cut(s) | 257, 1021, 1288 |
| PspGI | CCWGG | 3 cut(s) | 257, 1021, 1288 |
| PspN4I | GGNNCC | 3 cut(s) | 690, 904, 1007 |
| PspPI | GGNCC | 1 cut(s) | 839 |
| PsuI | RGATCY | 1 cut(s) | 614 |
| PsyI | GACNNNGTC | 1 cut(s) | 1121 |
| RsaI | GTAC | 7 cut(s) | 39, 217, 239, 371, 768, 1181, 1296 |
| RsaNI | GTAC | 7 cut(s) | 38, 216, 238, 370, 767, 1180, 1295 |
| RseI | CAYNNNNRTG | 2 cut(s) | 420, 784 |
| SaqAI | TTAA | 5 cut(s) | 551, 771, 846, 1136, 1230 |
| SatI | GCNGC | 2 cut(s) | 94, 633 |
| Sau3AI | GATC | 5 cut(s) | 121, 614, 742, 952, 1093 |
| Sau96I | GGNCC | 1 cut(s) | 839 |
| ScaI | AGTACT | 1 cut(s) | 768 |
| SchI | GAGTC | 1 cut(s) | 268 |
| ScrFI | CCNGG | 4 cut(s) | 259, 299, 1023, 1290 |
| SduI | GDGCHC | 1 cut(s) | 863 |
| SetI | ASST | 8 cut(s) | 201, 431, 530, 825, 852, 1125, 1149, 1300 |
| SfaNI | GCATC | 1 cut(s) | 788 |
| SfoI | GGCGCC | 1 cut(s) | 690 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 420, 784 |
| SmlI | CTYRAG | 2 cut(s) | 959, 1229 |
| SmoI | CTYRAG | 2 cut(s) | 959, 1229 |
| SsiI | CCGC | 4 cut(s) | 284, 365, 633, 967 |
| SspDI | GGCGCC | 1 cut(s) | 688 |
| SspMI | CTAG | 1 cut(s) | 698 |
| StyD4I | CCNGG | 4 cut(s) | 257, 297, 1021, 1288 |
| StyI | CCWWGG | 2 cut(s) | 906, 918 |
| TaaI | ACNGT | 5 cut(s) | 242, 293, 673, 1046, 1173 |
| TaiI | ACGT | 1 cut(s) | 1125 |
| TaqI | TCGA | 2 cut(s) | 745, 951 |
| TatI | WGTACW | 5 cut(s) | 37, 215, 237, 369, 766 |
| TauI | GCSGC | 1 cut(s) | 635 |
| TfiI | GAWTC | 7 cut(s) | 166, 210, 377, 545, 598, 704, 761 |
| Tru1I | TTAA | 5 cut(s) | 551, 771, 846, 1136, 1230 |
| Tru9I | TTAA | 5 cut(s) | 551, 771, 846, 1136, 1230 |
| TscAI | CASTG | 5 cut(s) | 247, 600, 868, 1051, 1283 |
| TseFI | GTSAC | 3 cut(s) | 148, 621, 979 |
| TseI | GCWGC | 1 cut(s) | 93 |
| Tsp45I | GTSAC | 3 cut(s) | 148, 621, 979 |
| TspDTI | ATGAA | 6 cut(s) | 17, 102, 390, 537, 1044, 1121 |
| TspGWI | ACGGA | 1 cut(s) | 743 |
| TspRI | CASTG | 5 cut(s) | 247, 600, 868, 1051, 1283 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1121 |
| Vha464I | CTTAAG | 1 cut(s) | 1229 |
| XapI | RAATTY | 5 cut(s) | 105, 677, 871, 1138, 1214 |
| XceI | RCATGY | 4 cut(s) | 222, 397, 505, 779 |
| XmiI | GTMKAC | 1 cut(s) | 1320 |
| XmnI | GAANNNNTTC | 1 cut(s) | 285 |
| XspI | CTAG | 1 cut(s) | 698 |
| ZrmI | AGTACT | 1 cut(s) | 768 |
| Zsp2I | ATGCAT | 1 cut(s) | 781 |