FvH4_6g10720

Protein trichome birefringence-like 35

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
6436097 .. 6440225
4129 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10720.t1

Sequence Viewer

Length: 1335 bp
ATGAAGTTGTGGAACAGAAAGAAACCCCATTTTCCTGTACTGGTCTTTTTCTTCTCTCTGTTCTTGGTCTTCTCAATTCTCCACAATGAACGCAGCATTTTGCAAATTCAAGACCACCCAGATCATGCTCCTCGCCATCACATTCCAGTCACTTATGTAAAGCCGAATCGCCTCACCCATCAAAACCATGTTACAGAGGTTTTGGACAGATTCAGTACATGCAACTCCACCAGAGAGTACAGTGGGAGGAAAATAGCCTGGACTGATAATCTGACTCCAGAACCGCTTCACGGTGGCCGGGGGGAGAGTTTGGAGAGTTGTGATGTGTTCTCCGGCAAATGGGTGTATGATAATTCCTCCTATCCGCTGTACAATGAATCGGAATGCCCTTACATGTCAGACCAGTTGGCCTGCCATAAACATGGAAGGTCTGATTTGGATTATCAGTATTGGAGATGGCAACCCCATAACTGCAACTTGAAGAGATGGAATGTGATTGACATGTGGGAGAAGTTGAGGGGTAAAAGGTTGATGTTTGTAGGGGATTCATTAAACAGAGGGCAATGGATATCAATGGTCTGCTTGTTGCAATCAGTGATTCCAAAGGATAAGAGATCCATGTCACCAAACGCCGCTCTTACCATTTTCCGAGCAGAGGAATATAATGCTACTGTGGAATTTCTTTGGGCGCCTCTTCTAGTAGAATCTAATTCTGATGACCCTGTGAACCACAGATTAGAAGATCGAATAATCCGTCCAGATTCAGTACTTAAACATGCATCAATATGGGAGAATGCAGACATACTAATTTTCAATTCCTACCTGTGGTGGAGACAAGGCCCAGTTAAGCTTTTATGGAGCACTGAAGCGAATTCTGTCTGTGAAGAATTAGATGGTATGGGAGCCATGGAATTGGCCATGGGGGCTTGGGCAGAATGGGCTTCTAAAGTCGATCCCCTCAAGAAGCGGGTCTTCTTCGTCACAATGTCTCCTACACATCTCTGGAGCCGAGAGTGGAAGCCAGGAAATGAAGGCAATTGTTACAGTGAGAAATCCCCCATTGACTTGGAGGGCTACTGGGGAAGTGGCTCTGATCTGCCTACTATGAACATGGTGGACAACGTCCTCAGTAAGTTAAATTCAAAGGTTTCAGTTCTCAACATTACTCAACTGTCAGAGTACCGAAAAGATGGTCATCCTTCCATTTACCGGAAATTTTGGGAAGCACTTAAGCCTGAGCAGTTGTCTAATCCAGCGAGTTACTCTGATTGCATACACTGGTGCTTGCCTGGTGTACCTGATGTTTGGAACGAGTTGGTATACCATTTTTTGTAA

Protein Analysis

445

Amino Acids

51.81

Weight (kDa)

6.42

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 105 - 159 7.8e-24 PMR5 N terminal Domain
PC-Esterase PF13839 162 - 442 3.4e-81 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AccBSI CCGCTC 1 cut(s) 635
AccI GTMKAC 1 cut(s) 1320
AciI CCGC 4 cut(s) 284, 365, 633, 967
AclWI GGATC 2 cut(s) 609, 947
AcoI YGGCCR 2 cut(s) 295, 915
AcsI RAATTY 5 cut(s) 105, 677, 871, 1138, 1214
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 689
AfaI GTAC 7 cut(s) 39, 217, 239, 371, 768, 1181, 1296
AfiI CCNNNNNNNGG 5 cut(s) 290, 339, 655, 825, 1209
AflII CTTAAG 1 cut(s) 1229
AflIII ACRYGT 2 cut(s) 393, 501
AgsI TTSAA 4 cut(s) 110, 481, 814, 1143
AjnI CCWGG 3 cut(s) 257, 1021, 1288
AluBI AGCT 1 cut(s) 850
AluI AGCT 1 cut(s) 850
Alw21I GWGCWC 1 cut(s) 863
Alw26I GTCTC 2 cut(s) 826, 993
AlwI GGATC 2 cut(s) 609, 947
AoxI GGCC 4 cut(s) 295, 408, 838, 915
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 5 cut(s) 105, 677, 871, 1138, 1214
ArsI GACNNNNNNTTYG 4 cut(s) 739, 771, 1177, 1209
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 1 cut(s) 839
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 166, 615
BalI TGGCCA 1 cut(s) 917
BanI GGYRCC 1 cut(s) 688
BbsI GAAGAC 2 cut(s) 61, 964
Bbv12I GWGCWC 1 cut(s) 863
BbvI GCAGC 1 cut(s) 105
BccI CCATC 6 cut(s) 144, 186, 450, 480, 887, 1184
BciT130I CCWGG 3 cut(s) 259, 1023, 1290
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 826, 993
BfaI CTAG 1 cut(s) 698
BfoI RGCGCY 1 cut(s) 692
BfrI CTTAAG 1 cut(s) 1229
BglI GCCNNNNNGGC 1 cut(s) 923
BisI GCNGC 2 cut(s) 94, 633
BlsI GCNGC 2 cut(s) 95, 634
BmcAI AGTACT 1 cut(s) 768
Bme1390I CCNGG 4 cut(s) 259, 299, 1023, 1290
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 3 cut(s) 690, 904, 1007
BmrFI CCNGG 4 cut(s) 259, 299, 1023, 1290
BmrI ACTGGG 2 cut(s) 836, 1087
BmsI GCATC 1 cut(s) 788
BmuI ACTGGG 2 cut(s) 836, 1087
BpiI GAAGAC 2 cut(s) 61, 964
BpmI CTGGAG 2 cut(s) 261, 1024
Bpu10I CCTNAGC 1 cut(s) 1236
BpuEI CTTGAG 1 cut(s) 944
BpuMI CCSGG 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 1194
BsaHI GRCGYC 1 cut(s) 689
BsaJI CCNNGG 3 cut(s) 298, 906, 918
BsaWI WCCGGW 1 cut(s) 1209
BsaXI ACNNNNNCTCC 2 cut(s) 973, 1003
Bsc4I CCNNNNNNNGG 5 cut(s) 290, 339, 655, 825, 1209
Bse1I ACTGG 6 cut(s) 45, 146, 403, 842, 1082, 1283
Bse3DI GCAATG 1 cut(s) 569
Bse8I GATNNNNATC 1 cut(s) 1194
BseBI CCWGG 3 cut(s) 259, 1023, 1290
BseDI CCNNGG 3 cut(s) 298, 906, 918
BseGI GGATG 1 cut(s) 1195
BseJI GATNNNNATC 1 cut(s) 1194
BseLI CCNNNNNNNGG 5 cut(s) 290, 339, 655, 825, 1209
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 2 cut(s) 1141, 1227
BseNI ACTGG 6 cut(s) 45, 146, 403, 842, 1082, 1283
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 4 cut(s) 297, 410, 840, 917
BshNI GGYRCC 1 cut(s) 688
BsiHKAI GWGCWC 1 cut(s) 863
BsiSI CCGG 3 cut(s) 298, 333, 1210
BslI CCNNNNNNNGG 5 cut(s) 290, 339, 655, 825, 1209
BsmAI GTCTC 2 cut(s) 826, 993
BsmI GAATGC 2 cut(s) 389, 799
BsnI GGCC 4 cut(s) 297, 410, 840, 917
Bsp1286I GDGCHC 1 cut(s) 863
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 5 cut(s) 121, 614, 742, 952, 1093
Bsp19I CCATGG 2 cut(s) 906, 918
BspACI CCGC 4 cut(s) 284, 365, 633, 967
BspANI GGCC 4 cut(s) 297, 410, 840, 917
BspCNI CTCAG 2 cut(s) 1140, 1228
BspLI GGNNCC 3 cut(s) 690, 904, 1007
BspPI GGATC 2 cut(s) 609, 947
BspT107I GGYRCC 1 cut(s) 688
BspTI CTTAAG 1 cut(s) 1229
BsrBI CCGCTC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 569
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 6 cut(s) 45, 146, 403, 842, 1082, 1283
BssECI CCNNGG 3 cut(s) 298, 906, 918
BssMI GATC 5 cut(s) 121, 614, 742, 952, 1093
BssNAI GTATAC 1 cut(s) 1321
BssNI GRCGYC 1 cut(s) 689
BssT1I CCWWGG 2 cut(s) 906, 918
Bst1107I GTATAC 1 cut(s) 1321
Bst2UI CCWGG 3 cut(s) 259, 1023, 1290
Bst4CI ACNGT 5 cut(s) 242, 293, 673, 1046, 1173
Bst6I CTCTTC 2 cut(s) 476, 699
BstACI GRCGYC 1 cut(s) 689
BstAFI CTTAAG 1 cut(s) 1229
BstAUI TGTACA 1 cut(s) 369
BstC8I GCNNGC 2 cut(s) 412, 1286
BstDEI CTNAG 2 cut(s) 1127, 1236
BstDSI CCRYGG 2 cut(s) 906, 918
BstF5I GGATG 1 cut(s) 1195
BstH2I RGCGCY 1 cut(s) 692
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 5 cut(s) 124, 617, 745, 955, 1096
BstMAI GTCTC 2 cut(s) 826, 993
BstMBI GATC 5 cut(s) 121, 614, 742, 952, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 923, 938
BstNI CCWGG 3 cut(s) 259, 1023, 1290
BstNSI RCATGY 4 cut(s) 222, 397, 505, 779
BstSCI CCNGG 4 cut(s) 257, 297, 1021, 1288
BstV1I GCAGC 1 cut(s) 105
BstV2I GAAGAC 2 cut(s) 61, 964
BstX2I RGATCY 1 cut(s) 614
BstXI CCANNNNNNTGG 3 cut(s) 422, 913, 1066
BstYI RGATCY 1 cut(s) 614
BstZ17I GTATAC 1 cut(s) 1321
BsuRI GGCC 4 cut(s) 297, 410, 840, 917
BtgI CCRYGG 2 cut(s) 906, 918
BtsCI GGATG 1 cut(s) 1195
BtsIMutI CAGTG 5 cut(s) 247, 600, 861, 1051, 1276
Cac8I GCNNGC 2 cut(s) 412, 1286
CfoI GCGC 1 cut(s) 691
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 7 cut(s) 38, 216, 238, 370, 767, 1180, 1295
CviQI GTAC 7 cut(s) 38, 216, 238, 370, 767, 1180, 1295
DdeI CTNAG 2 cut(s) 1127, 1236
DinI GGCGCC 1 cut(s) 690
DpnI GATC 5 cut(s) 123, 616, 744, 954, 1095
DpnII GATC 5 cut(s) 121, 614, 742, 952, 1093
EaeI YGGCCR 2 cut(s) 295, 915
Eam1104I CTCTTC 2 cut(s) 476, 699
EarI CTCTTC 2 cut(s) 476, 699
Eco130I CCWWGG 2 cut(s) 906, 918
Eco32I GATATC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 885
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 3 cut(s) 257, 1021, 1288
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 906, 918
EcoT22I ATGCAT 1 cut(s) 781
EgeI GGCGCC 1 cut(s) 690
EheI GGCGCC 1 cut(s) 690
ErhI CCWWGG 2 cut(s) 906, 918
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FauI CCCGC 1 cut(s) 960
FblI GTMKAC 1 cut(s) 1320
Fnu4HI GCNGC 2 cut(s) 94, 633
FokI GGATG 1 cut(s) 1182
Fsp4HI GCNGC 2 cut(s) 94, 633
FspBI CTAG 1 cut(s) 698
GlaI GCGC 1 cut(s) 690
GluI GCNGC 2 cut(s) 94, 633
GsuI CTGGAG 2 cut(s) 261, 1024
HaeII RGCGCY 1 cut(s) 692
HaeIII GGCC 4 cut(s) 297, 410, 840, 917
HapII CCGG 3 cut(s) 298, 333, 1210
HhaI GCGC 1 cut(s) 691
Hin1I GRCGYC 1 cut(s) 689
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 8 cut(s) 166, 210, 274, 377, 545, 598, 704, 761
HpaII CCGG 3 cut(s) 298, 333, 1210
HphI GGTGA 2 cut(s) 166, 615
Hpy166II GTNNAC 4 cut(s) 727, 1117, 1295, 1321
Hpy188I TCNGA 9 cut(s) 273, 382, 400, 433, 650, 715, 1093, 1177, 1267
Hpy188III TCNNGA 5 cut(s) 110, 278, 758, 961, 1003
Hpy8I GTNNAC 4 cut(s) 727, 1117, 1295, 1321
HpyAV CCTTC 3 cut(s) 420, 1025, 1209
HpyCH4III ACNGT 5 cut(s) 242, 293, 673, 1046, 1173
HpyCH4IV ACGT 1 cut(s) 1122
HpyCH4V TGCA 7 cut(s) 103, 222, 474, 589, 779, 797, 1272
HpyF10VI GCNNNNNNNGC 2 cut(s) 923, 938
HpyF3I CTNAG 2 cut(s) 1127, 1236
HpySE526I ACGT 1 cut(s) 1122
Hsp92I GRCGYC 1 cut(s) 689
HspAI GCGC 1 cut(s) 689
KasI GGCGCC 1 cut(s) 688
Kzo9I GATC 5 cut(s) 121, 614, 742, 952, 1093
LmnI GCTCC 4 cut(s) 133, 858, 902, 1005
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 788
MaeI CTAG 1 cut(s) 698
MaeII ACGT 1 cut(s) 1122
MaeIII GTNAC 6 cut(s) 148, 190, 621, 979, 1040, 1259
MalI GATC 5 cut(s) 123, 616, 744, 954, 1095
MbiI CCGCTC 1 cut(s) 635
MboI GATC 5 cut(s) 121, 614, 742, 952, 1093
MboII GAAGA 8 cut(s) 43, 61, 493, 686, 752, 896, 964, 967
MfeI CAATTG 1 cut(s) 1036
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 1 cut(s) 863
MlsI TGGCCA 1 cut(s) 917
MluNI TGGCCA 1 cut(s) 917
Mly113I GGCGCC 1 cut(s) 689
MlyI GAGTC 1 cut(s) 268
Mox20I TGGCCA 1 cut(s) 917
Mph1103I ATGCAT 1 cut(s) 781
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 917
MseI TTAA 5 cut(s) 551, 771, 846, 1136, 1230
MslI CAYNNNNRTG 2 cut(s) 420, 784
Msp20I TGGCCA 1 cut(s) 917
MspA1I CMGCKG 1 cut(s) 367
MspCI CTTAAG 1 cut(s) 1229
MspI CCGG 3 cut(s) 298, 333, 1210
MspR9I CCNGG 4 cut(s) 259, 299, 1023, 1290
MunI CAATTG 1 cut(s) 1036
Mva1269I GAATGC 2 cut(s) 389, 799
MvaI CCWGG 3 cut(s) 259, 1023, 1290
MwoI GCNNNNNNNGC 2 cut(s) 923, 938
NarI GGCGCC 1 cut(s) 689
NciI CCSGG 1 cut(s) 299
NcoI CCATGG 2 cut(s) 906, 918
NdeII GATC 5 cut(s) 121, 614, 742, 952, 1093
NlaIV GGNNCC 3 cut(s) 690, 904, 1007
NmeAIII GCCGAG 1 cut(s) 1034
NmuCI GTSAC 3 cut(s) 148, 621, 979
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 4 cut(s) 222, 397, 505, 779
PciI ACATGT 2 cut(s) 393, 501
PcsI WCGNNNNNNNCGW 1 cut(s) 751
PctI GAATGC 2 cut(s) 389, 799
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 7 cut(s) 166, 210, 377, 545, 598, 704, 761
PflFI GACNNNGTC 1 cut(s) 1121
PkrI GCNGC 2 cut(s) 95, 634
PleI GAGTC 1 cut(s) 268
PluTI GGCGCC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 268
PscI ACATGT 2 cut(s) 393, 501
Psp6I CCWGG 3 cut(s) 257, 1021, 1288
PspGI CCWGG 3 cut(s) 257, 1021, 1288
PspN4I GGNNCC 3 cut(s) 690, 904, 1007
PspPI GGNCC 1 cut(s) 839
PsuI RGATCY 1 cut(s) 614
PsyI GACNNNGTC 1 cut(s) 1121
RsaI GTAC 7 cut(s) 39, 217, 239, 371, 768, 1181, 1296
RsaNI GTAC 7 cut(s) 38, 216, 238, 370, 767, 1180, 1295
RseI CAYNNNNRTG 2 cut(s) 420, 784
SaqAI TTAA 5 cut(s) 551, 771, 846, 1136, 1230
SatI GCNGC 2 cut(s) 94, 633
Sau3AI GATC 5 cut(s) 121, 614, 742, 952, 1093
Sau96I GGNCC 1 cut(s) 839
ScaI AGTACT 1 cut(s) 768
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 4 cut(s) 259, 299, 1023, 1290
SduI GDGCHC 1 cut(s) 863
SetI ASST 8 cut(s) 201, 431, 530, 825, 852, 1125, 1149, 1300
SfaNI GCATC 1 cut(s) 788
SfoI GGCGCC 1 cut(s) 690
SmiMI CAYNNNNRTG 2 cut(s) 420, 784
SmlI CTYRAG 2 cut(s) 959, 1229
SmoI CTYRAG 2 cut(s) 959, 1229
SsiI CCGC 4 cut(s) 284, 365, 633, 967
SspDI GGCGCC 1 cut(s) 688
SspMI CTAG 1 cut(s) 698
StyD4I CCNGG 4 cut(s) 257, 297, 1021, 1288
StyI CCWWGG 2 cut(s) 906, 918
TaaI ACNGT 5 cut(s) 242, 293, 673, 1046, 1173
TaiI ACGT 1 cut(s) 1125
TaqI TCGA 2 cut(s) 745, 951
TatI WGTACW 5 cut(s) 37, 215, 237, 369, 766
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 7 cut(s) 166, 210, 377, 545, 598, 704, 761
Tru1I TTAA 5 cut(s) 551, 771, 846, 1136, 1230
Tru9I TTAA 5 cut(s) 551, 771, 846, 1136, 1230
TscAI CASTG 5 cut(s) 247, 600, 868, 1051, 1283
TseFI GTSAC 3 cut(s) 148, 621, 979
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 3 cut(s) 148, 621, 979
TspDTI ATGAA 6 cut(s) 17, 102, 390, 537, 1044, 1121
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 5 cut(s) 247, 600, 868, 1051, 1283
Tth111I GACNNNGTC 1 cut(s) 1121
Vha464I CTTAAG 1 cut(s) 1229
XapI RAATTY 5 cut(s) 105, 677, 871, 1138, 1214
XceI RCATGY 4 cut(s) 222, 397, 505, 779
XmiI GTMKAC 1 cut(s) 1320
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 698
ZrmI AGTACT 1 cut(s) 768
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.