Rh3DG116400

Protein trichome birefringence-like 35

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
9726655 .. 9730477
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG116400.1

Sequence Viewer

Length: 1332 bp
ATGATGAAGCTGTGGAACAGAAAGAAAACCCATTTTCCTCTACTGGTCTTCGTCTTCTCTCTGTTCTTGGTTTTTTCAATTCTCCACAATGAACGCAGCATTTTGGAAATTCAAGACAACCCAGATCGTGCTCCTCGCCATCAAATTCCAGTCACTTATGTAAAGCCGAATCGTCTCACCCATCAAAACCATGCTCCAGAGGTGTTGGATAGATTCAGTACGTGCAACTCCACCAGTGAGTACAGTGGGAGGAAAATAGCGTGGAGTGGTCATCTTAAGCCGGAGTACGGTGGCCGGAGGGAGAGTTTGGAGAGCTGTGACTTGTTTTCCGGCAAATGGGTATTAGATAATTCTTCGTATCCACTGTACAATGAGGCCGAGTGCCCTTACATGTCGGACCAGTTGGCCTGCCACAAACATGGAAGGTCTGATTTGGATTATCAGTATTGGAGATGGCAACCCCATAATTGCAACTTGAAGAGATGGAATGTGATTGACATGTGGGAGAAGTTGAGGGGCAAAAGGTTGATGTTTGTAGGGGATTCATTAAACAGAGGTCAGTGGATATCAATGGTCTGCTTGTTGCAATCAGTGATTCCAGCGGATAAGAGATCCATGTCACCGAATGCCGCCCTTACCATTTTCCGAGCCGAGGAATATAATGCTACTGTGGAATTTCTTTGGGCCCCTCTTCTAGTAGAATCTAATTCTGATGACCCAGTGAATCACAGGTTGGATGATCGAATAATCCGTCCAGATTCAGTTCTTAAACATGCATCAATATGGGAGAATGCAGACATATTGATTTTCAATTCCTACCTGTGGTGGAGACAAGGCCCGGTTAAGCTTTTATGGAGCACTGAAGCAAATGCTGTGTGTGAAGAATTAGATGGTATAGGAGCCATGGAATTGGCCATGGGCGCTTGGGCAGACTGGGCTTCTAAAGTTGATCCCCTCAAGAAGCGGGTCTTCTTTGTCACTATGTCTCCTACACATCTCTGGAGTCAAGAGTGGAAGCCAGGAGATGAAGGTAATTGTTACAATGAGAAATCCCCCATTGAGTTGGAGGGCTACTGGGGAAGTGGCTCTGATCTCCCTACTATGAGCATGGTGGACAATGTCCTCAGTAAGTTGAGTTCAAAGGTTTCAGTTCTCAACATTACTCAACTGTCAGAGTACCGGAAAGATGGTCATCCTTCCATTTACCGGAAATTTTGGGAGGCACTAAAGCCTGAACAGTTGTCTAACCCAGCGAGTTACTCTGATTGCATACACTGGTGCTTGCCTGGTGTACCTGATGTTTGGAACGAGTTGCTTTACCATTTTTTGTAA

Protein Analysis

443

Amino Acids

51.49

Weight (kDa)

6.22

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 104 - 158 1.2e-23 PMR5 N terminal Domain
PC-Esterase PF13839 161 - 441 2.5e-81 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 602, 630, 964
AclWI GGATC 2 cut(s) 606, 944
AcoI YGGCCR 2 cut(s) 292, 912
AcsI RAATTY 4 cut(s) 108, 144, 674, 1211
AcuI CTGAAG 1 cut(s) 882
AfaI GTAC 6 cut(s) 220, 242, 287, 368, 1178, 1293
AfiI CCNNNNNNNGG 5 cut(s) 287, 336, 652, 822, 1206
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 2 cut(s) 390, 498
AgsI TTSAA 5 cut(s) 78, 113, 478, 811, 1140
AjnI CCWGG 2 cut(s) 1018, 1285
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AluBI AGCT 3 cut(s) 10, 315, 847
AluI AGCT 3 cut(s) 10, 315, 847
Alw21I GWGCWC 2 cut(s) 133, 860
Alw26I GTCTC 3 cut(s) 179, 823, 990
AlwI GGATC 2 cut(s) 606, 944
AoxI GGCC 6 cut(s) 292, 375, 405, 684, 835, 912
ApaI GGGCCC 1 cut(s) 688
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 4 cut(s) 108, 144, 674, 1211
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
AspLEI GCGC 1 cut(s) 923
AspS9I GGNCC 4 cut(s) 397, 684, 685, 836
AsuC2I CCSGG 1 cut(s) 839
AsuHPI GGTGA 2 cut(s) 169, 612
AvaII GGWCC 1 cut(s) 397
BaeGI GKGCMC 2 cut(s) 386, 688
BalI TGGCCA 1 cut(s) 914
BanII GRGCYC 1 cut(s) 688
BbsI GAAGAC 3 cut(s) 40, 46, 961
Bbv12I GWGCWC 2 cut(s) 133, 860
BbvI GCAGC 1 cut(s) 108
BccI CCATC 6 cut(s) 147, 189, 447, 477, 884, 1181
BciT130I CCWGG 2 cut(s) 1020, 1287
BciVI GTATCC 1 cut(s) 369
BcnI CCSGG 1 cut(s) 839
BcoDI GTCTC 3 cut(s) 179, 823, 990
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 924
BfrI CTTAAG 1 cut(s) 275
BfuI GTATCC 1 cut(s) 369
BisI GCNGC 2 cut(s) 97, 630
BlsI GCNGC 2 cut(s) 98, 631
Bme1390I CCNGG 3 cut(s) 839, 1020, 1287
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 4 cut(s) 397, 684, 685, 836
BmiI GGNNCC 3 cut(s) 686, 687, 901
BmrFI CCNGG 3 cut(s) 839, 1020, 1287
BmrI ACTGGG 3 cut(s) 713, 943, 1084
BmsI GCATC 1 cut(s) 785
BmuI ACTGGG 3 cut(s) 713, 943, 1084
BpiI GAAGAC 3 cut(s) 40, 46, 961
BpmI CTGGAG 2 cut(s) 180, 1021
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 1 cut(s) 839
BsaAI YACGTR 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 1191
BsaJI CCNNGG 3 cut(s) 651, 903, 915
BsaWI WCCGGW 2 cut(s) 1179, 1206
BsaXI ACNNNNNCTCC 4 cut(s) 289, 319, 970, 1000
Bsc4I CCNNNNNNNGG 5 cut(s) 287, 336, 652, 822, 1206
Bse1I ACTGG 8 cut(s) 48, 149, 234, 400, 719, 938, 1079, 1280
Bse8I GATNNNNATC 1 cut(s) 1191
BseBI CCWGG 2 cut(s) 1020, 1287
BseDI CCNNGG 3 cut(s) 651, 903, 915
BseGI GGATG 2 cut(s) 742, 1192
BseJI GATNNNNATC 1 cut(s) 1191
BseLI CCNNNNNNNGG 5 cut(s) 287, 336, 652, 822, 1206
BseMII CTCAG 1 cut(s) 1138
BseNI ACTGG 8 cut(s) 48, 149, 234, 400, 719, 938, 1079, 1280
BseRI GAGGAG 1 cut(s) 123
BseSI GKGCMC 2 cut(s) 386, 688
BseXI GCAGC 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 1249
BshFI GGCC 6 cut(s) 294, 377, 407, 686, 837, 914
BsiHKAI GWGCWC 2 cut(s) 133, 860
BsiSI CCGG 6 cut(s) 281, 295, 330, 839, 1180, 1207
BslI CCNNNNNNNGG 5 cut(s) 287, 336, 652, 822, 1206
BsmAI GTCTC 3 cut(s) 179, 823, 990
BsmBI CGTCTC 1 cut(s) 179
BsmI GAATGC 2 cut(s) 631, 796
BsnI GGCC 6 cut(s) 294, 377, 407, 686, 837, 914
Bsp120I GGGCCC 1 cut(s) 684
Bsp1286I GDGCHC 4 cut(s) 133, 386, 688, 860
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 5 cut(s) 124, 611, 739, 949, 1090
Bsp19I CCATGG 2 cut(s) 903, 915
BspACI CCGC 3 cut(s) 602, 630, 964
BspANI GGCC 6 cut(s) 294, 377, 407, 686, 837, 914
BspCNI CTCAG 1 cut(s) 1137
BspLI GGNNCC 3 cut(s) 686, 687, 901
BspPI GGATC 2 cut(s) 606, 944
BspTI CTTAAG 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 8 cut(s) 48, 149, 234, 400, 719, 938, 1079, 1280
BssECI CCNNGG 3 cut(s) 651, 903, 915
BssMI GATC 5 cut(s) 124, 611, 739, 949, 1090
BssT1I CCWWGG 2 cut(s) 903, 915
Bst2UI CCWGG 2 cut(s) 1020, 1287
Bst4CI ACNGT 6 cut(s) 245, 290, 366, 670, 1170, 1239
Bst6I CTCTTC 2 cut(s) 473, 696
BstAFI CTTAAG 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 409, 1283
BstDEI CTNAG 1 cut(s) 1124
BstDSI CCRYGG 2 cut(s) 903, 915
BstF5I GGATG 2 cut(s) 742, 1192
BstH2I RGCGCY 1 cut(s) 924
BstHHI GCGC 1 cut(s) 923
BstKTI GATC 5 cut(s) 127, 614, 742, 952, 1093
BstMAI GTCTC 3 cut(s) 179, 823, 990
BstMBI GATC 5 cut(s) 124, 611, 739, 949, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 920, 935
BstNI CCWGG 2 cut(s) 1020, 1287
BstNSI RCATGY 3 cut(s) 394, 502, 776
BstSCI CCNGG 3 cut(s) 837, 1018, 1285
BstSLI GKGCMC 2 cut(s) 386, 688
BstV1I GCAGC 1 cut(s) 108
BstV2I GAAGAC 3 cut(s) 40, 46, 961
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 3 cut(s) 419, 910, 1063
BstYI RGATCY 1 cut(s) 611
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 6 cut(s) 294, 377, 407, 686, 837, 914
BtgI CCRYGG 2 cut(s) 903, 915
BtsCI GGATG 2 cut(s) 742, 1192
BtsIMutI CAGTG 8 cut(s) 241, 250, 362, 566, 597, 726, 858, 1273
Cac8I GCNNGC 2 cut(s) 409, 1283
CfoI GCGC 1 cut(s) 923
Cfr13I GGNCC 4 cut(s) 397, 684, 685, 836
Csp6I GTAC 6 cut(s) 219, 241, 286, 367, 1177, 1292
CviAII CATG 9 cut(s) 191, 391, 419, 499, 616, 773, 904, 916, 1108
CviQI GTAC 6 cut(s) 219, 241, 286, 367, 1177, 1292
DdeI CTNAG 1 cut(s) 1124
DpnI GATC 5 cut(s) 126, 613, 741, 951, 1092
DpnII GATC 5 cut(s) 124, 611, 739, 949, 1090
EaeI YGGCCR 2 cut(s) 292, 912
Eam1104I CTCTTC 2 cut(s) 473, 696
EarI CTCTTC 2 cut(s) 473, 696
Eco130I CCWWGG 2 cut(s) 903, 915
Eco24I GRGCYC 1 cut(s) 688
Eco32I GATATC 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 882
EcoO109I RGGNCCY 1 cut(s) 685
EcoRII CCWGG 2 cut(s) 1018, 1285
EcoRV GATATC 1 cut(s) 567
EcoT14I CCWWGG 2 cut(s) 903, 915
EcoT22I ATGCAT 1 cut(s) 778
EcoT38I GRGCYC 1 cut(s) 688
ErhI CCWWGG 2 cut(s) 903, 915
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 9 cut(s) 194, 394, 422, 502, 619, 776, 907, 919, 1111
FalI AAGNNNNNCTT 2 cut(s) 953, 985
FatI CATG 9 cut(s) 190, 390, 418, 498, 615, 772, 903, 915, 1107
FauI CCCGC 1 cut(s) 957
Fnu4HI GCNGC 2 cut(s) 97, 630
FokI GGATG 2 cut(s) 749, 1179
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 2 cut(s) 97, 630
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 922
GluI GCNGC 2 cut(s) 97, 630
GsaI CCCAGC 1 cut(s) 1253
GsuI CTGGAG 2 cut(s) 180, 1021
HaeII RGCGCY 1 cut(s) 924
HaeIII GGCC 6 cut(s) 294, 377, 407, 686, 837, 914
HapII CCGG 6 cut(s) 281, 295, 330, 839, 1180, 1207
HhaI GCGC 1 cut(s) 923
Hin1II CATG 9 cut(s) 194, 394, 422, 502, 619, 776, 907, 919, 1111
Hin6I GCGC 1 cut(s) 921
HinP1I GCGC 1 cut(s) 921
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 8 cut(s) 169, 213, 542, 595, 701, 724, 758, 1003
HpaII CCGG 6 cut(s) 281, 295, 330, 839, 1180, 1207
HphI GGTGA 2 cut(s) 169, 612
Hpy166II GTNNAC 2 cut(s) 1114, 1292
Hpy188I TCNGA 7 cut(s) 397, 430, 647, 712, 1090, 1174, 1264
Hpy188III TCNNGA 6 cut(s) 113, 197, 755, 958, 1000, 1007
Hpy8I GTNNAC 2 cut(s) 1114, 1292
HpyAV CCTTC 3 cut(s) 417, 1022, 1206
HpyCH4III ACNGT 6 cut(s) 245, 290, 366, 670, 1170, 1239
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 6 cut(s) 225, 471, 586, 776, 794, 1269
HpyF10VI GCNNNNNNNGC 2 cut(s) 920, 935
HpyF3I CTNAG 1 cut(s) 1124
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 9 cut(s) 194, 394, 422, 502, 619, 776, 907, 919, 1111
HspAI GCGC 1 cut(s) 921
Kzo9I GATC 5 cut(s) 124, 611, 739, 949, 1090
LmnI GCTCC 4 cut(s) 136, 199, 855, 899
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 1 cut(s) 785
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 6 cut(s) 151, 317, 618, 976, 1037, 1256
MalI GATC 5 cut(s) 126, 613, 741, 951, 1092
MboI GATC 5 cut(s) 124, 611, 739, 949, 1090
MboII GAAGA 7 cut(s) 40, 46, 345, 490, 683, 893, 961
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 4 cut(s) 133, 386, 688, 860
MlsI TGGCCA 1 cut(s) 914
MluNI TGGCCA 1 cut(s) 914
MlyI GAGTC 1 cut(s) 1012
MmeI TCCRAC 4 cut(s) 186, 375, 714, 1044
Mox20I TGGCCA 1 cut(s) 914
Mph1103I ATGCAT 1 cut(s) 778
MscI TGGCCA 1 cut(s) 914
MseI TTAA 4 cut(s) 276, 548, 768, 843
MslI CAYNNNNRTG 2 cut(s) 417, 781
Msp20I TGGCCA 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 602
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 6 cut(s) 281, 295, 330, 839, 1180, 1207
MspR9I CCNGG 3 cut(s) 839, 1020, 1287
Mva1269I GAATGC 2 cut(s) 631, 796
MvaI CCWGG 2 cut(s) 1020, 1287
MwoI GCNNNNNNNGC 2 cut(s) 920, 935
NciI CCSGG 1 cut(s) 839
NcoI CCATGG 2 cut(s) 903, 915
NdeII GATC 5 cut(s) 124, 611, 739, 949, 1090
NlaIII CATG 9 cut(s) 194, 394, 422, 502, 619, 776, 907, 919, 1111
NlaIV GGNNCC 3 cut(s) 686, 687, 901
NmeAIII GCCGAG 2 cut(s) 403, 676
NmuCI GTSAC 4 cut(s) 151, 317, 618, 976
NsiI ATGCAT 1 cut(s) 778
NspI RCATGY 3 cut(s) 394, 502, 776
PciI ACATGT 2 cut(s) 390, 498
PcsI WCGNNNNNNNCGW 1 cut(s) 748
PctI GAATGC 2 cut(s) 631, 796
PfeI GAWTC 7 cut(s) 169, 213, 542, 595, 701, 724, 758
PflFI GACNNNGTC 1 cut(s) 1118
PkrI GCNGC 2 cut(s) 98, 631
PleI GAGTC 1 cut(s) 1011
PpsI GAGTC 1 cut(s) 1011
Ppu21I YACGTR 1 cut(s) 222
PscI ACATGT 2 cut(s) 390, 498
Psp6I CCWGG 2 cut(s) 1018, 1285
PspFI CCCAGC 1 cut(s) 1249
PspGI CCWGG 2 cut(s) 1018, 1285
PspN4I GGNNCC 3 cut(s) 686, 687, 901
PspOMI GGGCCC 1 cut(s) 684
PspPI GGNCC 4 cut(s) 397, 684, 685, 836
PsrI GAACNNNNNNTAC 2 cut(s) 1120, 1152
PsuI RGATCY 1 cut(s) 611
PsyI GACNNNGTC 1 cut(s) 1118
RsaI GTAC 6 cut(s) 220, 242, 287, 368, 1178, 1293
RsaNI GTAC 6 cut(s) 219, 241, 286, 367, 1177, 1292
RseI CAYNNNNRTG 2 cut(s) 417, 781
SaqAI TTAA 4 cut(s) 276, 548, 768, 843
SatI GCNGC 2 cut(s) 97, 630
Sau3AI GATC 5 cut(s) 124, 611, 739, 949, 1090
Sau96I GGNCC 4 cut(s) 397, 684, 685, 836
SchI GAGTC 1 cut(s) 1012
ScrFI CCNGG 3 cut(s) 839, 1020, 1287
SduI GDGCHC 4 cut(s) 133, 386, 688, 860
SfaNI GCATC 1 cut(s) 785
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 417, 781
SmlI CTYRAG 2 cut(s) 275, 956
SmoI CTYRAG 2 cut(s) 275, 956
SsiI CCGC 3 cut(s) 602, 630, 964
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 3 cut(s) 837, 1018, 1285
StyI CCWWGG 2 cut(s) 903, 915
TaaI ACNGT 6 cut(s) 245, 290, 366, 670, 1170, 1239
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 742
TatI WGTACW 2 cut(s) 240, 366
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 7 cut(s) 169, 213, 542, 595, 701, 724, 758
Tru1I TTAA 4 cut(s) 276, 548, 768, 843
Tru9I TTAA 4 cut(s) 276, 548, 768, 843
TscAI CASTG 8 cut(s) 241, 250, 369, 566, 597, 726, 865, 1280
TseFI GTSAC 4 cut(s) 151, 317, 618, 976
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 4 cut(s) 151, 317, 618, 976
TspDTI ATGAA 4 cut(s) 20, 105, 534, 1041
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 8 cut(s) 241, 250, 369, 566, 597, 726, 865, 1280
Tth111I GACNNNGTC 1 cut(s) 1118
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 4 cut(s) 108, 144, 674, 1211
XceI RCATGY 3 cut(s) 394, 502, 776
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.