Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009175

Physical Location & Seq

Genomic Coordinates Reverse (-)

9057217 .. 9060918

Gene Structure 3702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G009430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTGGGAGAAGTTGAGGGGCAAAAGGTTGATGTTTGTAGGGGATTCATTAAACAGAGGTCAGTGGATATCAATGGTCTGCTTGTTGCAATCAGTGATTCCAGCGGATAAGAGATCCATGTCACCGAATGCCGCCCTTACCATTTTCCGAGCCGAGGAATATAATGCTACTGTGGAATTTCTTTGGGCCCCTCTTCTAGTAGAATCTAATTCTGATGACCCAGTGAATCACAGGTTGGATGATCGAATAATCCGTCCAGATTCAGTTCTTAAACATGCATCAATATGGGAGAATGCAGACATATTGATTTTCAATTCCTACCTGTGGTGGAGACAAGGCCCGGTTAAGCTTTTATGGAGCACTGAAGCAAATGCTGTGTGTGAAGAATTAGATGGTATAGGAGCCATGGAATTGGCCATGGGCGCTTGGGCAGACTGGGCTTCTAAAGTTGATCCCCTCAAGAAGCGGGTCTTCTTTGTTACAATGTCTTCTACACATCTCTGGAGTCAAGAGTGGAAGCCAGGAGATGAAGGTAATTGTTACAATGAGAAATCCCCCATTGAGTTGGAGGGCTACTGGGGAAGTGGCTCTGATCTCCCTACTATGAGCATGGTGGACAATGTCCTCAGTAAGTTGAGTTCAAAGGTTTCAGTTCTCAACATTACTCAACTGTCAGAGTACCGGAAAGATGGTCATCCTTCCATTTACCGGAAATTTTGGGAGGCACTAAAGCCTGAACAGTTGTCTAACCCAGCGAGTTACTCTGATTGCATACACTGGTGCTTGCCTGGTGTACCTGATGTTTGGAACGAGTTGCTTTACCATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

277

Amino Acids

31.76

Weight (kDa)

5.21

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	3 - 275	6.6e-80	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01620 AT5G01620 AT5G01620
fragaria_vesca	FvH4_6g10720 FvH4_6g10720 FvH4_6g10720 FvH4_6g10720
malus_domestica	MD04G1165100.v1.1 MD12G1179100.v1.1
prunus_persica	Prupe.6G284200_v2.0.a1
pyrus_communis	pycom04g14720 pycom12g16900
rosa_chinensis	RchiOBHm_Chr3g0461751
rosa_laevigata	RLG00000024903
rosa_multiflora	Rmu_sc0000619.1_g000010
rosa_roxburghii	Rroxscaffold_6G00417990
rosa_rugosa	Rorug03G0053200
rosa_samantha	Rh3AG111400 Rh3BG114400 Rh3CG116700 Rh3DG116400
rosa_wichuraiana	Rw3G009430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	104, 132, 466
AclWI	GGATC	2 cut(s)	108, 446
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	176, 713
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	680, 795
AfiI	CCNNNNNNNGG	3 cut(s)	154, 324, 708
AgsI	TTSAA	2 cut(s)	313, 642
AjnI	CCWGG	2 cut(s)	520, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	108, 446
AoxI	GGCC	3 cut(s)	186, 337, 414
ApaI	GGGCCC	1 cut(s)	190
ApoI	RAATTY	2 cut(s)	176, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	3 cut(s)	186, 187, 338
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	463, 480
Bbv12I	GWGCWC	1 cut(s)	362
BccI	CCATC	2 cut(s)	386, 683
BciT130I	CCWGG	2 cut(s)	522, 789
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	426
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	3 cut(s)	341, 522, 789
BmgT120I	GGNCC	3 cut(s)	186, 187, 338
BmiI	GGNNCC	3 cut(s)	188, 189, 403
BmrFI	CCNGG	3 cut(s)	341, 522, 789
BmrI	ACTGGG	3 cut(s)	215, 445, 586
BmsI	GCATC	1 cut(s)	287
BmuI	ACTGGG	3 cut(s)	215, 445, 586
BpiI	GAAGAC	2 cut(s)	463, 480
BpmI	CTGGAG	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	693
BsaJI	CCNNGG	3 cut(s)	153, 405, 417
BsaWI	WCCGGW	2 cut(s)	681, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 324, 708
Bse1I	ACTGG	4 cut(s)	221, 440, 581, 782
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	522, 789
BseDI	CCNNGG	3 cut(s)	153, 405, 417
BseGI	GGATG	2 cut(s)	244, 694
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	3 cut(s)	154, 324, 708
BseMII	CTCAG	1 cut(s)	640
BseNI	ACTGG	4 cut(s)	221, 440, 581, 782
BseSI	GKGCMC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	751
BshFI	GGCC	3 cut(s)	188, 339, 416
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	3 cut(s)	341, 682, 709
BslI	CCNNNNNNNGG	3 cut(s)	154, 324, 708
BsmAI	GTCTC	1 cut(s)	325
BsmI	GAATGC	2 cut(s)	133, 298
BsnI	GGCC	3 cut(s)	188, 339, 416
Bsp120I	GGGCCC	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	190, 362
Bsp143I	GATC	4 cut(s)	113, 241, 451, 592
Bsp19I	CCATGG	2 cut(s)	405, 417
BspACI	CCGC	3 cut(s)	104, 132, 466
BspANI	GGCC	3 cut(s)	188, 339, 416
BspCNI	CTCAG	1 cut(s)	639
BspLI	GGNNCC	3 cut(s)	188, 189, 403
BspPI	GGATC	2 cut(s)	108, 446
BsrI	ACTGG	4 cut(s)	221, 440, 581, 782
BssECI	CCNNGG	3 cut(s)	153, 405, 417
BssMI	GATC	4 cut(s)	113, 241, 451, 592
BssT1I	CCWWGG	2 cut(s)	405, 417
Bst2UI	CCWGG	2 cut(s)	522, 789
Bst4CI	ACNGT	3 cut(s)	172, 672, 741
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	785
BstDEI	CTNAG	1 cut(s)	626
BstDSI	CCRYGG	2 cut(s)	405, 417
BstF5I	GGATG	2 cut(s)	244, 694
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	4 cut(s)	116, 244, 454, 595
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	113, 241, 451, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 437
BstNI	CCWGG	2 cut(s)	522, 789
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	3 cut(s)	339, 520, 787
BstSLI	GKGCMC	1 cut(s)	190
BstV2I	GAAGAC	2 cut(s)	463, 480
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	2 cut(s)	412, 565
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	188, 339, 416
BtgI	CCRYGG	2 cut(s)	405, 417
BtsCI	GGATG	2 cut(s)	244, 694
BtsIMutI	CAGTG	5 cut(s)	68, 99, 228, 360, 775
Cac8I	GCNNGC	1 cut(s)	785
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	3 cut(s)	186, 187, 338
Csp6I	GTAC	2 cut(s)	679, 794
CviAII	CATG	5 cut(s)	118, 275, 406, 418, 610
CviQI	GTAC	2 cut(s)	679, 794
DdeI	CTNAG	1 cut(s)	626
DpnI	GATC	4 cut(s)	115, 243, 453, 594
DpnII	GATC	4 cut(s)	113, 241, 451, 592
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	2 cut(s)	405, 417
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	520, 787
EcoRV	GATATC	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	405, 417
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	405, 417
FaeI	CATG	5 cut(s)	121, 278, 409, 421, 613
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FatI	CATG	5 cut(s)	117, 274, 405, 417, 609
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	251, 681
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	1 cut(s)	755
GsuI	CTGGAG	1 cut(s)	523
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	188, 339, 416
HapII	CCGG	3 cut(s)	341, 682, 709
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	5 cut(s)	121, 278, 409, 421, 613
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	6 cut(s)	44, 97, 203, 226, 260, 505
HpaII	CCGG	3 cut(s)	341, 682, 709
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	2 cut(s)	616, 794
Hpy188I	TCNGA	5 cut(s)	149, 214, 592, 676, 766
Hpy188III	TCNNGA	4 cut(s)	257, 460, 502, 509
Hpy8I	GTNNAC	2 cut(s)	616, 794
HpyAV	CCTTC	2 cut(s)	524, 708
HpyCH4III	ACNGT	3 cut(s)	172, 672, 741
HpyCH4V	TGCA	4 cut(s)	88, 278, 296, 771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 437
HpyF3I	CTNAG	1 cut(s)	626
Hsp92II	CATG	5 cut(s)	121, 278, 409, 421, 613
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	4 cut(s)	113, 241, 451, 592
LmnI	GCTCC	2 cut(s)	357, 401
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	4 cut(s)	120, 478, 539, 758
MalI	GATC	4 cut(s)	115, 243, 453, 594
MboI	GATC	4 cut(s)	113, 241, 451, 592
MboII	GAAGA	4 cut(s)	185, 395, 463, 480
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	190, 362
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	7 cut(s)	176, 208, 313, 386, 410, 535, 713
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	2 cut(s)	216, 546
MnlI	CCTC	8 cut(s)	9, 50, 148, 201, 467, 562, 635, 715
Mox20I	TGGCCA	1 cut(s)	416
Mph1103I	ATGCAT	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	3 cut(s)	50, 270, 345
MslI	CAYNNNNRTG	1 cut(s)	283
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	341, 682, 709
MspR9I	CCNGG	3 cut(s)	341, 522, 789
Mva1269I	GAATGC	2 cut(s)	133, 298
MvaI	CCWGG	2 cut(s)	522, 789
MwoI	GCNNNNNNNGC	2 cut(s)	422, 437
NciI	CCSGG	1 cut(s)	341
NcoI	CCATGG	2 cut(s)	405, 417
NdeII	GATC	4 cut(s)	113, 241, 451, 592
NlaIII	CATG	5 cut(s)	121, 278, 409, 421, 613
NlaIV	GGNNCC	3 cut(s)	188, 189, 403
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PctI	GAATGC	2 cut(s)	133, 298
PfeI	GAWTC	5 cut(s)	44, 97, 203, 226, 260
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	520, 787
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	2 cut(s)	520, 787
PspN4I	GGNNCC	3 cut(s)	188, 189, 403
PspOMI	GGGCCC	1 cut(s)	186
PspPI	GGNCC	3 cut(s)	186, 187, 338
PsrI	GAACNNNNNNTAC	2 cut(s)	622, 654
PsuI	RGATCY	1 cut(s)	113
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	2 cut(s)	680, 795
RsaNI	GTAC	2 cut(s)	679, 794
RseI	CAYNNNNRTG	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	50, 270, 345
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	4 cut(s)	113, 241, 451, 592
Sau96I	GGNCC	3 cut(s)	186, 187, 338
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	3 cut(s)	341, 522, 789
SduI	GDGCHC	2 cut(s)	190, 362
SetI	ASST	8 cut(s)	29, 61, 236, 324, 351, 535, 648, 799
SfaNI	GCATC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	7 cut(s)	176, 208, 313, 386, 410, 535, 713
SsiI	CCGC	3 cut(s)	104, 132, 466
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	339, 520, 787
StyI	CCWWGG	2 cut(s)	405, 417
TaaI	ACNGT	3 cut(s)	172, 672, 741
TaqI	TCGA	1 cut(s)	244
TasI	AATT	7 cut(s)	176, 208, 313, 386, 410, 535, 713
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	5 cut(s)	44, 97, 203, 226, 260
Tru1I	TTAA	3 cut(s)	50, 270, 345
Tru9I	TTAA	3 cut(s)	50, 270, 345
TscAI	CASTG	5 cut(s)	68, 99, 228, 367, 782
TseFI	GTSAC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	36, 543
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	5 cut(s)	68, 99, 228, 367, 782
Tth111I	GACNNNGTC	1 cut(s)	620
XapI	RAATTY	2 cut(s)	176, 713
XceI	RCATGY	1 cut(s)	278
XspI	CTAG	1 cut(s)	197
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.