AT5G01910

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011345
Physical Location & Seq
Reverse (-)
357675 .. 358962
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01910.1

Sequence Viewer

Length: 543 bp
ATGAAATGTTCAGGTCGAAAAGCACTGCAGCCGAGAAACATCTACCAGACCCCAAAGGAGGATGCTTTCTTCGTGAAGCCCAAAGCTGCAGAGAAGCTCAAGGAGAATCTGAATCTTGAGACATCAATCGATGCTTCTCTTGCGGAGGAGCTTAGTGCCTTCAAGAAGAAACTCGAGAGGCTGAGAGAGGATCGAGAGAGCACTGAGAAGCTGCTAAAGGAGAGAGATGAAGCCATGGATCTGCACATGAGCCATCTTCTCCAGAGAGGAGAGACACAGAAAAGCCTTGAAATCCAGGTCGATCGCCTCTTTCGATTGAAGGAGCTCCACGCCTATTCCTCTAAGATTTCTCCAATCCGATCTCTGAGAGCCAAGGAGCAGCAGGAGAAGATGAGACGCTTCACCTTCGCAGGTGAAGAACAACCAGATGAAGAAAGCTCCGTCGAGATCGCTAATGGGCCCATTGAAGAAGAAAGCTCGACCAAAAGTAATGTGTTGGAGAGAGATATGATCATCGCAAATACCCAACCCATCATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.82

Weight (kDa)

6.05

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 198, 246
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 4 cut(s) 163, 290, 319, 467
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 7 cut(s) 86, 97, 151, 211, 325, 438, 477
AluI AGCT 7 cut(s) 86, 97, 151, 211, 325, 438, 477
Alw21I GWGCWC 2 cut(s) 203, 327
Alw26I GTCTC 3 cut(s) 113, 266, 388
AlwI GGATC 2 cut(s) 198, 246
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 458
ApaI GGGCCC 1 cut(s) 462
ApeKI GCWGC 4 cut(s) 28, 86, 211, 379
AspS9I GGNCC 2 cut(s) 458, 459
AsuHPI GGTGA 2 cut(s) 394, 425
AvaI CYCGRG 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 462
BanII GRGCYC 2 cut(s) 327, 462
Bbv12I GWGCWC 2 cut(s) 203, 327
BbvI GCAGC 4 cut(s) 40, 73, 198, 391
BccI CCATC 2 cut(s) 261, 539
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 1 cut(s) 510
BcoDI GTCTC 3 cut(s) 113, 266, 388
BfmI CTRYAG 2 cut(s) 26, 87
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 4 cut(s) 29, 87, 212, 380
BlsI GCNGC 4 cut(s) 30, 88, 213, 381
Bme1390I CCNGG 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 458, 459
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 52, 121
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 2 cut(s) 83, 137
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 234, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 234, 372
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 3 cut(s) 173, 195, 356
BseRI GAGGAG 2 cut(s) 161, 282
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 4 cut(s) 40, 73, 198, 391
BsgI GTGCAG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 460
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 203, 327
BsiHKCI CYCGRG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 3 cut(s) 113, 266, 388
BsmBI CGTCTC 1 cut(s) 388
BsnI GGCC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 173
Bsp120I GGGCCC 1 cut(s) 458
Bsp1286I GDGCHC 3 cut(s) 203, 327, 462
Bsp143I GATC 6 cut(s) 190, 238, 301, 359, 447, 510
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 3 cut(s) 174, 196, 357
BspDI ATCGAT 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 460
BspMAI CTGCAG 2 cut(s) 30, 91
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 2 cut(s) 198, 246
BssECI CCNNGG 2 cut(s) 234, 372
BssMI GATC 6 cut(s) 190, 238, 301, 359, 447, 510
BssT1I CCWWGG 2 cut(s) 234, 372
Bst2UI CCWGG 1 cut(s) 296
BstDEI CTNAG 5 cut(s) 152, 182, 204, 342, 365
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 6 cut(s) 193, 241, 304, 362, 450, 513
BstMAI GTCTC 3 cut(s) 113, 266, 388
BstMBI GATC 6 cut(s) 190, 238, 301, 359, 447, 510
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 2 cut(s) 26, 87
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 4 cut(s) 40, 73, 198, 391
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 460
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 499
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 2 cut(s) 23, 201
BveI ACCTGC 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 458, 459
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 405
CviAII CATG 2 cut(s) 235, 247
DdeI CTNAG 5 cut(s) 152, 182, 204, 342, 365
DpnI GATC 6 cut(s) 192, 240, 303, 361, 449, 512
DpnII GATC 6 cut(s) 190, 238, 301, 359, 447, 510
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 2 cut(s) 234, 372
Eco24I GRGCYC 2 cut(s) 327, 462
Eco53kI GAGCTC 1 cut(s) 325
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 234, 372
EcoT38I GRGCYC 2 cut(s) 327, 462
ErhI CCWWGG 2 cut(s) 234, 372
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 2 cut(s) 238, 250
FaiI YATR 4 cut(s) 236, 248, 509, 536
FatI CATG 2 cut(s) 234, 246
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 29, 87, 212, 380
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 327, 462
Fsp4HI GCNGC 4 cut(s) 29, 87, 212, 380
GluI GCNGC 4 cut(s) 29, 87, 212, 380
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 460
HgaI GACGC 1 cut(s) 405
Hin1II CATG 2 cut(s) 238, 250
HinfI GANTC 2 cut(s) 106, 112
HphI GGTGA 2 cut(s) 394, 425
Hpy188I TCNGA 3 cut(s) 111, 359, 366
Hpy188III TCNNGA 8 cut(s) 73, 116, 163, 175, 194, 262, 445, 540
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 169, 313, 415
HpyCH4V TGCA 3 cut(s) 28, 89, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 5 cut(s) 152, 182, 204, 342, 365
Hsp92II CATG 2 cut(s) 238, 250
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 6 cut(s) 190, 238, 301, 359, 447, 510
LmnI GCTCC 5 cut(s) 148, 322, 330, 376, 443
LpnPI CCDG 7 cut(s) 59, 275, 281, 308, 368, 396, 438
Lsp1109I GCAGC 4 cut(s) 40, 73, 198, 391
LweI GCATC 2 cut(s) 52, 121
MalI GATC 6 cut(s) 192, 240, 303, 361, 449, 512
MboI GATC 6 cut(s) 190, 238, 301, 359, 447, 510
MboII GAAGA 8 cut(s) 61, 178, 248, 400, 428, 443, 479, 482
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 3 cut(s) 203, 327, 462
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 7 cut(s) 52, 139, 171, 181, 260, 317, 349
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 140
NcoI CCATGG 1 cut(s) 234
NdeII GATC 6 cut(s) 190, 238, 301, 359, 447, 510
NlaIII CATG 2 cut(s) 238, 250
NlaIV GGNNCC 1 cut(s) 460
NmeAIII GCCGAG 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 173
PaqCI CACCTGC 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 310
PfeI GAWTC 2 cut(s) 106, 112
PkrI GCNGC 4 cut(s) 30, 88, 213, 381
Ple19I CGATCG 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 460
PspOMI GGGCCC 1 cut(s) 458
PspPI GGNCC 2 cut(s) 458, 459
PstI CTGCAG 2 cut(s) 30, 91
PsuI RGATCY 1 cut(s) 238
PvuI CGATCG 1 cut(s) 304
SacI GAGCTC 1 cut(s) 327
SatI GCNGC 4 cut(s) 29, 87, 212, 380
Sau3AI GATC 6 cut(s) 190, 238, 301, 359, 447, 510
Sau96I GGNCC 2 cut(s) 458, 459
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 3 cut(s) 203, 327, 462
SfaNI GCATC 2 cut(s) 52, 121
SfcI CTRYAG 2 cut(s) 26, 87
Sfr274I CTCGAG 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 173
SmlI CTYRAG 3 cut(s) 98, 116, 173
SmoI CTYRAG 3 cut(s) 98, 116, 173
SsiI CCGC 1 cut(s) 143
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 234, 372
TaqI TCGA 8 cut(s) 16, 129, 174, 193, 300, 313, 444, 479
TfiI GAWTC 2 cut(s) 106, 112
TscAI CASTG 2 cut(s) 30, 208
TseI GCWGC 4 cut(s) 28, 86, 211, 379
TspDTI ATGAA 3 cut(s) 17, 243, 444
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 2 cut(s) 30, 208
XhoI CTCGAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.