Rmu_sc0010030.1_g000003

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010030.1
OG0011345
Physical Location & Seq
Forward (+)
7897 .. 8585
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010030.1_g000003.1.cds

Sequence Viewer

Length: 615 bp
atgcaagccctccagcatcatccactcgccggagaccacattctccggcccaaaagcggccggacgcctctcaagcctgtgaactctccagcaactccggtcaaagccggtccggtcacaaaggcaaagccaccagcacaagaatgtatcagcatctctctgttgggcccctcgaacaaggagaacgggccggtttatgcggctcagatgatcgaaactgcggcgatggacgcttctttggcggaggagctgagtgcgatgaggaagaagctggagaggataagactggatagagagagaacagagaagatgctccaggaaagggatgcaatgctggatttgcagatgaaggagatagaaaacagaggtcaaatccagaagatggttgagattgatgttgatagggtgttcagattgaatcagctccattctcaatccattagattttctccgattcggtctctgagagaaaaggagcagcaaaagaaggccgctggatcaccagcagttaaggtaattcatacatccccaaatctcatagtttctgttctaagattgaaaatattgttccgagatttcaatttcaatttcttttctcttgacatcagcctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.02

Weight (kDa)

9.85

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 5 cut(s) 57, 200, 221, 242, 492
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 4 cut(s) 29, 56, 322, 382
AgsI TTSAA 4 cut(s) 418, 559, 580, 586
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 3 cut(s) 250, 271, 424
AluI AGCT 3 cut(s) 250, 271, 424
Alw26I GTCTC 2 cut(s) 27, 465
AlwI GGATC 1 cut(s) 505
AoxI GGCC 5 cut(s) 47, 58, 166, 188, 489
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 478
AspS9I GGNCC 5 cut(s) 48, 110, 166, 167, 188
AsuHPI GGTGA 1 cut(s) 492
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 490
BccI CCATC 2 cut(s) 220, 376
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 27, 465
BisI GCNGC 5 cut(s) 58, 201, 222, 479, 492
BlsI GCNGC 5 cut(s) 59, 202, 223, 480, 493
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 5 cut(s) 48, 110, 166, 167, 188
BmiI GGNNCC 2 cut(s) 168, 169
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 4 cut(s) 25, 162, 300, 316
BpmI CTGGAG 3 cut(s) 72, 293, 299
BpuEI CTTGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 27, 465
BsaWI WCCGGW 2 cut(s) 97, 112
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 56, 322, 382
Bse118I RCCGGY 2 cut(s) 107, 190
Bse1I ACTGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 317
BseGI GGATG 3 cut(s) 19, 331, 524
BseLI CCNNNNNNNGG 4 cut(s) 29, 56, 322, 382
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 218, 242, 455
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 490
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 49, 60, 168, 190, 491
BsiEI CGRYCG 1 cut(s) 61
BsiSI CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
BslI CCNNNNNNNGG 4 cut(s) 29, 56, 322, 382
BsmAI GTCTC 2 cut(s) 27, 465
BsnI GGCC 5 cut(s) 49, 60, 168, 190, 491
Bso31I GGTCTC 2 cut(s) 27, 465
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 210, 497
BspACI CCGC 5 cut(s) 57, 200, 221, 242, 492
BspANI GGCC 5 cut(s) 49, 60, 168, 190, 491
BspCNI CTCAG 3 cut(s) 217, 243, 456
BspLI GGNNCC 2 cut(s) 168, 169
BspPI GGATC 1 cut(s) 505
BspTNI GGTCTC 2 cut(s) 27, 465
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 2 cut(s) 107, 190
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 2 cut(s) 107, 190
BssMI GATC 2 cut(s) 210, 497
BssNI GRCGYC 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 204, 251, 464, 551
BstF5I GGATG 3 cut(s) 19, 331, 524
BstKTI GATC 2 cut(s) 213, 500
BstMAI GTCTC 2 cut(s) 27, 465
BstMBI GATC 2 cut(s) 210, 497
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 73, 230, 239, 340
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 490
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 5 cut(s) 49, 60, 168, 190, 491
BtgZI GCGATG 2 cut(s) 239, 272
BtsCI GGATG 3 cut(s) 19, 331, 524
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 2 cut(s) 107, 190
Cfr13I GGNCC 5 cut(s) 48, 110, 166, 167, 188
CpoI CGGWCCG 1 cut(s) 110
CseI GACGC 2 cut(s) 73, 239
CspI CGGWCCG 1 cut(s) 110
DdeI CTNAG 4 cut(s) 204, 251, 464, 551
DpnI GATC 2 cut(s) 212, 499
DpnII GATC 2 cut(s) 210, 497
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
EciI GGCGGA 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 2 cut(s) 27, 465
Eco47I GGWCC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 170
FaiI YATR 3 cut(s) 198, 522, 539
Fnu4HI GCNGC 5 cut(s) 58, 201, 222, 479, 492
FokI GGATG 3 cut(s) 6, 338, 511
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 5 cut(s) 58, 201, 222, 479, 492
GluI GCNGC 5 cut(s) 58, 201, 222, 479, 492
GsuI CTGGAG 3 cut(s) 72, 293, 299
HaeIII GGCC 5 cut(s) 49, 60, 168, 190, 491
HapII CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
HgaI GACGC 2 cut(s) 73, 239
Hin1I GRCGYC 1 cut(s) 65
HinfI GANTC 2 cut(s) 418, 454
HpaII CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
HphI GGTGA 1 cut(s) 492
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 5 cut(s) 207, 413, 453, 465, 572
Hpy188III TCNNGA 2 cut(s) 376, 599
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 343, 481
HpyCH4V TGCA 3 cut(s) 4, 329, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 230, 239, 340
HpyF3I CTNAG 4 cut(s) 204, 251, 464, 551
Hsp92I GRCGYC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 210, 497
LmnI GCTCC 4 cut(s) 247, 318, 429, 475
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 4 cut(s) 25, 162, 300, 316
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 212, 499
MboI GATC 2 cut(s) 210, 497
MboII GAAGA 3 cut(s) 277, 319, 391
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 3 cut(s) 516, 580, 586
MnlI CCTC 7 cut(s) 20, 78, 181, 238, 255, 270, 359
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 142
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
MspR9I CCNGG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 73, 230, 239, 340
NdeII GATC 2 cut(s) 210, 497
NlaIV GGNNCC 2 cut(s) 168, 169
NmuCI GTSAC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 418, 454
PflMI CCANNNNNTGG 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 5 cut(s) 59, 202, 223, 480, 493
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 168, 169
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 5 cut(s) 48, 110, 166, 167, 188
RseI CAYNNNNRTG 1 cut(s) 142
Rsr2I CGGWCCG 1 cut(s) 110
RsrII CGGWCCG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 5 cut(s) 58, 201, 222, 479, 492
Sau3AI GATC 2 cut(s) 210, 497
Sau96I GGNCC 5 cut(s) 48, 110, 166, 167, 188
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 170
SetI ASST 5 cut(s) 252, 273, 370, 426, 516
SfaNI GCATC 4 cut(s) 25, 162, 300, 316
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 3 cut(s) 516, 580, 586
SsiI CCGC 5 cut(s) 57, 200, 221, 242, 492
SspI AATATT 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 315
TaqI TCGA 2 cut(s) 173, 213
TaqII GACCGA 1 cut(s) 447
TasI AATT 3 cut(s) 516, 580, 586
TauI GCSGC 4 cut(s) 60, 203, 224, 494
TfiI GAWTC 2 cut(s) 418, 454
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 478
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 362, 509
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.