Rh3BG103400

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011345
Physical Location & Seq
Forward (+)
8285373 .. 8286175
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG103400.1

Sequence Viewer

Length: 621 bp
ATGCAAGCCCTCCAGCATCATCCACTCGCCGGAGACCACATTCTCCGGCCCAAAAGCGGCCGGACGCCTCTCAAGCCTGTGAACTCTCCAGCAACTCCGGTCACAAAGGCAAAGCCACCAGCACAAGAATGTATCAGCATCTCTCTGTTGGGCCCCTCGAACAAGGAGAACGGGCCGGTTTATGCGGCTCAGATGATCGAAACTGCGGCGATGGACGCTTCTTTGGCGGAGGAGCTGAGTGCGATGAGGAAGAAGCTGGAGAGGATAAGACTGGATAGAGAGAGAACAGAGAAGATGCTCCAGGAAAGGGATGCAATGCTGGATTTGCAGATGAAGGAGATAGAAAACAGAGGTCAAATCCAGAAGATGGTTGAGATTGATGTTGATAGGGTGTTCAGATTGAATCAGCTCCATTCTCAATCCATTAGATTTTCTCCGATTCGGTCTCTGAGAGAAAAGGAGCAGCAAAAGAAGGCCGCTGGATCACCAGCAGTTAAGATAGTGAATTTTGAAGAGATGGAGGAATCAGTAGGTGAAAACACACCACAGAAGCTGAGTTCTGCTTCAATTGATTCCGAAAGTATTACAGCAAGGGATACTGTGATTACCAAATCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.04

Weight (kDa)

8.65

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 367
AciI CCGC 5 cut(s) 57, 185, 206, 227, 477
AclWI GGATC 1 cut(s) 490
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 505
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 4 cut(s) 29, 56, 307, 367
AgsI TTSAA 3 cut(s) 403, 512, 567
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 4 cut(s) 235, 256, 409, 553
AluI AGCT 4 cut(s) 235, 256, 409, 553
Alw26I GTCTC 2 cut(s) 27, 450
AlwI GGATC 1 cut(s) 490
AlwNI CAGNNNCTG 1 cut(s) 553
AoxI GGCC 5 cut(s) 47, 58, 151, 173, 474
ApaI GGGCCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 1 cut(s) 505
AspS9I GGNCC 4 cut(s) 48, 151, 152, 173
AsuHPI GGTGA 2 cut(s) 477, 545
BaeGI GKGCMC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 475
BccI CCATC 3 cut(s) 205, 361, 511
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 589
BcoDI GTCTC 2 cut(s) 27, 450
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 5 cut(s) 58, 186, 207, 464, 477
BlsI GCNGC 5 cut(s) 59, 187, 208, 465, 478
Bme1390I CCNGG 1 cut(s) 302
BmgT120I GGNCC 4 cut(s) 48, 151, 152, 173
BmiI GGNNCC 2 cut(s) 153, 154
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 4 cut(s) 25, 147, 285, 301
BpmI CTGGAG 3 cut(s) 72, 278, 284
BpuEI CTTGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 27, 450
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 56, 307, 367
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 302
BseGI GGATG 2 cut(s) 19, 316
BseLI CCNNNNNNNGG 4 cut(s) 29, 56, 307, 367
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 4 cut(s) 203, 227, 440, 545
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 155
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 49, 60, 153, 175, 476
BsiEI CGRYCG 1 cut(s) 61
BsiSI CCGG 5 cut(s) 30, 46, 61, 98, 176
BslI CCNNNNNNNGG 4 cut(s) 29, 56, 307, 367
BsmAI GTCTC 2 cut(s) 27, 450
BsnI GGCC 5 cut(s) 49, 60, 153, 175, 476
Bso31I GGTCTC 2 cut(s) 27, 450
Bsp120I GGGCCC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 195, 482
BspACI CCGC 5 cut(s) 57, 185, 206, 227, 477
BspANI GGCC 5 cut(s) 49, 60, 153, 175, 476
BspCNI CTCAG 4 cut(s) 202, 228, 441, 546
BspLI GGNNCC 2 cut(s) 153, 154
BspPI GGATC 1 cut(s) 490
BspTNI GGTCTC 2 cut(s) 27, 450
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 175
BssMI GATC 2 cut(s) 195, 482
BssNI GRCGYC 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 601
Bst6I CTCTTC 1 cut(s) 507
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 189, 236, 449, 554
BstF5I GGATG 2 cut(s) 19, 316
BstKTI GATC 2 cut(s) 198, 485
BstMAI GTCTC 2 cut(s) 27, 450
BstMBI GATC 2 cut(s) 195, 482
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 73, 215, 224, 325
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 475
BstZI CGGCCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 5 cut(s) 49, 60, 153, 175, 476
BtgZI GCGATG 2 cut(s) 224, 257
BtsCI GGATG 2 cut(s) 19, 316
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 4 cut(s) 48, 151, 152, 173
CseI GACGC 2 cut(s) 73, 224
DdeI CTNAG 4 cut(s) 189, 236, 449, 554
DpnI GATC 2 cut(s) 197, 484
DpnII GATC 2 cut(s) 195, 482
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
EciI GGCGGA 1 cut(s) 242
EclXI CGGCCG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 2 cut(s) 27, 450
Eco52I CGGCCG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 155
FaiI YATR 1 cut(s) 183
Fnu4HI GCNGC 5 cut(s) 58, 186, 207, 464, 477
FokI GGATG 2 cut(s) 6, 323
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 5 cut(s) 58, 186, 207, 464, 477
GluI GCNGC 5 cut(s) 58, 186, 207, 464, 477
GsuI CTGGAG 3 cut(s) 72, 278, 284
HaeIII GGCC 5 cut(s) 49, 60, 153, 175, 476
HapII CCGG 5 cut(s) 30, 46, 61, 98, 176
HgaI GACGC 2 cut(s) 73, 224
Hin1I GRCGYC 1 cut(s) 65
HinfI GANTC 4 cut(s) 403, 439, 524, 572
HpaII CCGG 5 cut(s) 30, 46, 61, 98, 176
HphI GGTGA 2 cut(s) 477, 545
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 5 cut(s) 192, 398, 438, 450, 577
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 328, 466
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4V TGCA 3 cut(s) 4, 314, 328
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 215, 224, 325
HpyF3I CTNAG 4 cut(s) 189, 236, 449, 554
Hsp92I GRCGYC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 195, 482
LmnI GCTCC 4 cut(s) 232, 303, 414, 460
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 4 cut(s) 25, 147, 285, 301
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 197, 484
MboI GATC 2 cut(s) 195, 482
MboII GAAGA 4 cut(s) 262, 304, 376, 524
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 2 cut(s) 505, 567
MnlI CCTC 8 cut(s) 20, 78, 166, 223, 240, 255, 344, 514
MseI TTAA 2 cut(s) 495, 619
MslI CAYNNNNRTG 1 cut(s) 127
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 5 cut(s) 30, 46, 61, 98, 176
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 4 cut(s) 73, 215, 224, 325
NdeII GATC 2 cut(s) 195, 482
NlaIV GGNNCC 2 cut(s) 153, 154
NmuCI GTSAC 1 cut(s) 100
PfeI GAWTC 4 cut(s) 403, 439, 524, 572
PflMI CCANNNNNTGG 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 5 cut(s) 59, 187, 208, 465, 478
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 153, 154
PspOMI GGGCCC 1 cut(s) 151
PspPI GGNCC 4 cut(s) 48, 151, 152, 173
PstNI CAGNNNCTG 1 cut(s) 553
RseI CAYNNNNRTG 1 cut(s) 127
SaqAI TTAA 2 cut(s) 495, 619
SatI GCNGC 5 cut(s) 58, 186, 207, 464, 477
Sau3AI GATC 2 cut(s) 195, 482
Sau96I GGNCC 4 cut(s) 48, 151, 152, 173
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 155
SetI ASST 6 cut(s) 237, 258, 355, 411, 535, 555
SfaNI GCATC 4 cut(s) 25, 147, 285, 301
SmiMI CAYNNNNRTG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 505, 567
SsiI CCGC 5 cut(s) 57, 185, 206, 227, 477
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 601
TaqI TCGA 2 cut(s) 158, 198
TaqII GACCGA 1 cut(s) 432
TasI AATT 2 cut(s) 505, 567
TauI GCSGC 4 cut(s) 60, 188, 209, 479
TfiI GAWTC 4 cut(s) 403, 439, 524, 572
Tru1I TTAA 2 cut(s) 495, 619
Tru9I TTAA 2 cut(s) 495, 619
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 347
Van91I CCANNNNNTGG 1 cut(s) 367
XapI RAATTY 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.