Rmu_sc0000449.1_g000011

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000449.1
OG0011345
Physical Location & Seq
Reverse (-)
45025 .. 45689
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000449.1_g000011.1.cds

Sequence Viewer

Length: 558 bp
atgcaagccctccagcatcatccactcgccggagaccacattctccggcccaaaagcggccggacgcctctcaagcctgtgaactctccagcaactccggtcaaagccggtccggtcacaaaggcaaagccaccagcacaagaatgtatcagcatctctctgttgggcccctcgaacaaggagaacgggccggtttatgcggctcagatgatcgaaactgcggcgatggacgcttctttggcggaggagctgagtgcgatgaggaagaagctggagaggataagactggatagagagagaacagagattatttttttttttttttttttttttttttgcttatgcctcttggatttggaacagagattttctccgattcggtctctgagagaaaaggagcagcaaaagaaggccgctggatcaccagcagttaagatagtgaattttgaagagttggaggaatcagtaggtgaaaacacaccacagaagctgagttctgctacaattgattccgaaagtgttacagcaagggatactgtgattaccaaatctgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.49

Weight (kDa)

8.44

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 57, 200, 221, 242, 414
AclWI GGATC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 442
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 29, 56
AgsI TTSAA 1 cut(s) 449
AluBI AGCT 3 cut(s) 250, 271, 490
AluI AGCT 3 cut(s) 250, 271, 490
Alw26I GTCTC 2 cut(s) 27, 387
AlwI GGATC 1 cut(s) 427
AlwNI CAGNNNCTG 1 cut(s) 490
AoxI GGCC 5 cut(s) 47, 58, 166, 188, 411
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 400
ApoI RAATTY 1 cut(s) 442
AspS9I GGNCC 5 cut(s) 48, 110, 166, 167, 188
AsuHPI GGTGA 2 cut(s) 414, 482
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 412
BccI CCATC 1 cut(s) 220
BciVI GTATCC 1 cut(s) 526
BcoDI GTCTC 2 cut(s) 27, 387
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 5 cut(s) 58, 201, 222, 401, 414
BlsI GCNGC 5 cut(s) 59, 202, 223, 402, 415
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 5 cut(s) 48, 110, 166, 167, 188
BmiI GGNNCC 2 cut(s) 168, 169
BmsI GCATC 2 cut(s) 25, 162
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpmI CTGGAG 2 cut(s) 72, 293
BpuEI CTTGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 27, 387
BsaWI WCCGGW 2 cut(s) 97, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 56
Bse118I RCCGGY 2 cut(s) 107, 190
Bse1I ACTGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 29, 56
BseMII CTCAG 4 cut(s) 218, 242, 377, 482
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 49, 60, 168, 190, 413
BsiEI CGRYCG 1 cut(s) 61
BsiSI CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
BslI CCNNNNNNNGG 2 cut(s) 29, 56
BsmAI GTCTC 2 cut(s) 27, 387
BsnI GGCC 5 cut(s) 49, 60, 168, 190, 413
Bso31I GGTCTC 2 cut(s) 27, 387
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 210, 419
BspACI CCGC 5 cut(s) 57, 200, 221, 242, 414
BspANI GGCC 5 cut(s) 49, 60, 168, 190, 413
BspCNI CTCAG 4 cut(s) 217, 243, 378, 483
BspLI GGNNCC 2 cut(s) 168, 169
BspPI GGATC 1 cut(s) 427
BspTNI GGTCTC 2 cut(s) 27, 387
BsrFI RCCGGY 2 cut(s) 107, 190
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 2 cut(s) 107, 190
BssMI GATC 2 cut(s) 210, 419
BssNI GRCGYC 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 444
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 204, 251, 386, 491
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 2 cut(s) 213, 422
BstMAI GTCTC 2 cut(s) 27, 387
BstMBI GATC 2 cut(s) 210, 419
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 73, 230, 239
BstSLI GKGCMC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 412
BstZI CGGCCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 5 cut(s) 49, 60, 168, 190, 413
BtgZI GCGATG 2 cut(s) 239, 272
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 490
Cfr10I RCCGGY 2 cut(s) 107, 190
Cfr13I GGNCC 5 cut(s) 48, 110, 166, 167, 188
CpoI CGGWCCG 1 cut(s) 110
CseI GACGC 2 cut(s) 73, 239
CspI CGGWCCG 1 cut(s) 110
DdeI CTNAG 4 cut(s) 204, 251, 386, 491
DpnI GATC 2 cut(s) 212, 421
DpnII GATC 2 cut(s) 210, 419
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
EciI GGCGGA 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 2 cut(s) 27, 387
Eco47I GGWCC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 170
FaiI YATR 2 cut(s) 198, 343
Fnu4HI GCNGC 5 cut(s) 58, 201, 222, 401, 414
FokI GGATG 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 5 cut(s) 58, 201, 222, 401, 414
GluI GCNGC 5 cut(s) 58, 201, 222, 401, 414
GsuI CTGGAG 2 cut(s) 72, 293
HaeIII GGCC 5 cut(s) 49, 60, 168, 190, 413
HapII CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
HgaI GACGC 2 cut(s) 73, 239
Hin1I GRCGYC 1 cut(s) 65
HinfI GANTC 3 cut(s) 376, 461, 509
HpaII CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
HphI GGTGA 2 cut(s) 414, 482
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 4 cut(s) 207, 375, 387, 514
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 230, 239
HpyF3I CTNAG 4 cut(s) 204, 251, 386, 491
Hsp92I GRCGYC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 210, 419
LmnI GCTCC 2 cut(s) 247, 397
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 2 cut(s) 25, 162
MaeIII GTNAC 2 cut(s) 115, 520
MalI GATC 2 cut(s) 212, 421
MboI GATC 2 cut(s) 210, 419
MboII GAAGA 2 cut(s) 277, 461
MfeI CAATTG 1 cut(s) 504
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 2 cut(s) 442, 504
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 8 cut(s) 20, 78, 181, 238, 255, 270, 356, 451
MseI TTAA 2 cut(s) 432, 556
MslI CAYNNNNRTG 1 cut(s) 142
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
MunI CAATTG 1 cut(s) 504
MwoI GCNNNNNNNGC 3 cut(s) 73, 230, 239
NdeII GATC 2 cut(s) 210, 419
NlaIV GGNNCC 2 cut(s) 168, 169
NmuCI GTSAC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 376, 461, 509
PkrI GCNGC 5 cut(s) 59, 202, 223, 402, 415
PspN4I GGNNCC 2 cut(s) 168, 169
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 5 cut(s) 48, 110, 166, 167, 188
PstNI CAGNNNCTG 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 142
Rsr2I CGGWCCG 1 cut(s) 110
RsrII CGGWCCG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 432, 556
SatI GCNGC 5 cut(s) 58, 201, 222, 401, 414
Sau3AI GATC 2 cut(s) 210, 419
Sau96I GGNCC 5 cut(s) 48, 110, 166, 167, 188
SduI GDGCHC 1 cut(s) 170
SetI ASST 4 cut(s) 252, 273, 472, 492
SfaNI GCATC 2 cut(s) 25, 162
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 442, 504
SsiI CCGC 5 cut(s) 57, 200, 221, 242, 414
TaaI ACNGT 1 cut(s) 538
TaqI TCGA 2 cut(s) 173, 213
TaqII GACCGA 1 cut(s) 369
TasI AATT 2 cut(s) 442, 504
TauI GCSGC 4 cut(s) 60, 203, 224, 416
TfiI GAWTC 3 cut(s) 376, 461, 509
Tru1I TTAA 2 cut(s) 432, 556
Tru9I TTAA 2 cut(s) 432, 556
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.