Prupe.6G295300_v2.0.a1

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011345
Physical Location & Seq
Reverse (-)
27047487 .. 27048764
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G295300.1

Sequence Viewer

Length: 609 bp
ATGCAAGCGCTACAATCTCCCGTCACCGGAGACCAGCTTCTCCGGCCAAAAAGCGGCAGGAAACCTCTCCAGCCGAGGAACACTCGGGCGACTCTTGTGAATTCCAATCTCACAAAACTCAAGCCGATGCATAAATGGATAGGCGTTGACGATGATTCGAACAAGGAGAACCGTCCGATCTACGCGACTCCGACGAAGATGATCGAGCCGATCGACGCGTCCCTGGCGGAGGAGCTGAGCGCCATCAGGAAGAAGATGGAGAGGCTGAGATTGGACAGGGAGAGAACGGAGAAGATGCTCGAGGAAAGGGATATGGTGATGGAGATGCAGATGAAGGAGCTCGAGAGCAGAGGCCAGATTCAGAAGATGCTTGAGATCGAGCTTGATAGGATTTACAGGCTGAACCAGCTCCATACTCGATCAAATAGAGTGTCTCCGATTCGATCGCTGAGAGAGAAGGAGCAACAAAAGAAGGCCACTAAAATTGAATCGACAACGCAGGAAGTGACAGCTGAAGATATGGAAGAATCGGTGGATGAAAACACTCCACAGAAGCTGAGTTCTGCTTCGTCCAATTCCGAAATCGTTACAGAGAAGACTGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.45

Weight (kDa)

8.71

Isoelectric Point (pI)

60.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 185, 218
AciI CCGC 2 cut(s) 54, 227
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 534
AfeI AGCGCT 1 cut(s) 9
AfiI CCNNNNNNNGG 3 cut(s) 26, 53, 229
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 488
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 7 cut(s) 37, 235, 340, 382, 409, 512, 556
AluI AGCT 7 cut(s) 37, 235, 340, 382, 409, 512, 556
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 2 cut(s) 24, 438
AlwNI CAGNNNCTG 1 cut(s) 556
Ama87I CYCGRG 3 cut(s) 84, 299, 341
Aor51HI AGCGCT 1 cut(s) 9
AoxI GGCC 3 cut(s) 44, 352, 474
ApoI RAATTY 1 cut(s) 100
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AspLEI GCGC 2 cut(s) 10, 242
AsuHPI GGTGA 2 cut(s) 16, 328
AsuII TTCGAA 1 cut(s) 158
AvaI CYCGRG 3 cut(s) 84, 299, 341
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 342
BccI CCATC 3 cut(s) 250, 251, 313
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 24, 438
BfoI RGCGCY 2 cut(s) 11, 243
BisI GCNGC 1 cut(s) 55
BlpI GCTNAGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 224
BmeT110I CYCGRG 3 cut(s) 84, 299, 341
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 4 cut(s) 117, 285, 315, 357
BpiI GAAGAC 1 cut(s) 602
BplI GAGNNNNNCTC 2 cut(s) 67, 99
BpmI CTGGAG 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 158
BpuEI CTTGAG 2 cut(s) 104, 392
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 74, 222
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 53, 229
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 74, 222
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 3 cut(s) 26, 53, 229
BseMII CTCAG 4 cut(s) 227, 257, 440, 548
BseRI GAGGAG 1 cut(s) 245
Bsh1236I CGCG 2 cut(s) 185, 218
Bsh1285I CGRYCG 2 cut(s) 213, 446
BshFI GGCC 3 cut(s) 46, 354, 476
BsiEI CGRYCG 2 cut(s) 213, 446
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 3 cut(s) 84, 299, 341
BsiSI CCGG 2 cut(s) 27, 43
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 3 cut(s) 26, 53, 229
BsmAI GTCTC 2 cut(s) 24, 438
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 3 cut(s) 46, 354, 476
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 3 cut(s) 84, 299, 341
Bsp119I TTCGAA 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 6 cut(s) 177, 201, 210, 375, 419, 443
Bsp1720I GCTNAGC 1 cut(s) 236
BspACI CCGC 2 cut(s) 54, 227
BspANI GGCC 3 cut(s) 46, 354, 476
BspCNI CTCAG 4 cut(s) 228, 258, 441, 549
BspFNI CGCG 2 cut(s) 185, 218
BspT104I TTCGAA 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 74, 222
BssMI GATC 6 cut(s) 177, 201, 210, 375, 419, 443
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 236, 266, 449, 557
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 2 cut(s) 185, 218
BstH2I RGCGCY 2 cut(s) 11, 243
BstHHI GCGC 2 cut(s) 10, 242
BstKTI GATC 6 cut(s) 180, 204, 213, 378, 422, 446
BstMAI GTCTC 2 cut(s) 24, 438
BstMBI GATC 6 cut(s) 177, 201, 210, 375, 419, 443
BstMCI CGRYCG 2 cut(s) 213, 446
BstMWI GCNNNNNNNGC 3 cut(s) 43, 224, 406
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 2 cut(s) 185, 218
BstV2I GAAGAC 1 cut(s) 602
BsuRI GGCC 3 cut(s) 46, 354, 476
BtsCI GGATG 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 556
CfoI GCGC 2 cut(s) 10, 242
CseI GACGC 2 cut(s) 207, 224
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
DdeI CTNAG 4 cut(s) 236, 266, 449, 557
DpnI GATC 6 cut(s) 179, 203, 212, 377, 421, 445
DpnII GATC 6 cut(s) 177, 201, 210, 375, 419, 443
EaeI YGGCCR 1 cut(s) 44
EciI GGCGGA 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 24
Eco47III AGCGCT 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 3 cut(s) 84, 299, 341
EcoICRI GAGCTC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 342
FaiI YATR 4 cut(s) 132, 314, 414, 521
FaqI GGGAC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 548
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 55
GlaI GCGC 2 cut(s) 9, 241
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 2 cut(s) 11, 243
HaeIII GGCC 3 cut(s) 46, 354, 476
HapII CCGG 2 cut(s) 27, 43
HgaI GACGC 2 cut(s) 207, 224
HhaI GCGC 2 cut(s) 10, 242
Hin6I GCGC 2 cut(s) 8, 240
HinP1I GCGC 2 cut(s) 8, 240
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 7 cut(s) 91, 155, 187, 358, 439, 488, 527
HpaII CCGG 2 cut(s) 27, 43
HphI GGTGA 2 cut(s) 16, 328
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 5 cut(s) 177, 192, 363, 438, 580
Hpy188III TCNNGA 2 cut(s) 247, 343
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 196, 218
HpyAV CCTTC 3 cut(s) 328, 451, 466
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 4, 130, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 224, 406
HpyF3I CTNAG 4 cut(s) 236, 266, 449, 557
HspAI GCGC 2 cut(s) 8, 240
Kzo9I GATC 6 cut(s) 177, 201, 210, 375, 419, 443
LmnI GCTCC 4 cut(s) 232, 337, 414, 460
LweI GCATC 4 cut(s) 117, 285, 315, 357
MaeIII GTNAC 3 cut(s) 22, 505, 586
MalI GATC 6 cut(s) 179, 203, 212, 377, 421, 445
MboI GATC 6 cut(s) 177, 201, 210, 375, 419, 443
MboII GAAGA 8 cut(s) 208, 262, 265, 304, 376, 527, 536, 607
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 3 cut(s) 100, 483, 574
MluI ACGCGT 1 cut(s) 216
MlyI GAGTC 2 cut(s) 85, 181
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 6 cut(s) 69, 75, 223, 255, 295, 344
Mph1103I ATGCAT 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 27, 43
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 185, 218
MwoI GCNNNNNNNGC 3 cut(s) 43, 224, 406
NdeII GATC 6 cut(s) 177, 201, 210, 375, 419, 443
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 2 cut(s) 22, 505
NsiI ATGCAT 1 cut(s) 132
NspV TTCGAA 1 cut(s) 158
PaeR7I CTCGAG 2 cut(s) 299, 341
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 5 cut(s) 155, 358, 439, 488, 527
PkrI GCNGC 1 cut(s) 56
Ple19I CGATCG 2 cut(s) 213, 446
PleI GAGTC 2 cut(s) 85, 181
PpsI GAGTC 2 cut(s) 85, 181
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspXI VCTCGAGB 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 556
PvuI CGATCG 2 cut(s) 213, 446
PvuII CAGCTG 1 cut(s) 512
SacI GAGCTC 1 cut(s) 342
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 6 cut(s) 177, 201, 210, 375, 419, 443
SchI GAGTC 2 cut(s) 85, 181
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 342
SetI ASST 8 cut(s) 39, 67, 237, 342, 384, 411, 514, 558
SfaNI GCATC 4 cut(s) 117, 285, 315, 357
Sfr274I CTCGAG 2 cut(s) 299, 341
SfuI TTCGAA 1 cut(s) 158
SlaI CTCGAG 2 cut(s) 299, 341
SmlI CTYRAG 4 cut(s) 119, 299, 341, 371
SmoI CTYRAG 4 cut(s) 119, 299, 341, 371
Sse9I AATT 3 cut(s) 100, 483, 574
SsiI CCGC 2 cut(s) 54, 227
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 9 cut(s) 158, 204, 213, 300, 342, 378, 418, 442, 491
TasI AATT 3 cut(s) 100, 483, 574
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 5 cut(s) 155, 358, 439, 488, 527
TseFI GTSAC 2 cut(s) 22, 505
Tsp45I GTSAC 2 cut(s) 22, 505
TspDTI ATGAA 2 cut(s) 347, 552
TspGWI ACGGA 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 1 cut(s) 100
XhoI CTCGAG 2 cut(s) 299, 341
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.