pycom04g15510

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0011345
Physical Location & Seq
Reverse (-)
18389197 .. 18390008
812 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15510.2

Sequence Viewer

Length: 633 bp
ATGCAGGCGCTTCAATCTCCTGTTGCCGGGATTGCCGGAATTGCCGGGAACCAGATTGTTCGGCCTAGAAGCGGCCGGACGCCTCTCCAGCTGAAGAACACTCCGGCGACTCCGACAAACTCCGATGTCAAAATCAAGCCCGTACAGCAATTGATTGGCGTTGGGGATGATTCGAACAAGGAGAACCGTCCGATCTATGTGACTCCGGTGAAGATTGAGGCGATGGACGCGTCGCTGGCGGAGGAGCTGAGCGCCATCAGGAAGAAGATGGAGAGGATGAAATCGGACAGAGAGACGACGGAAAAGATGCTCAAGGAGAGGGATCTGATGATGGAAATGCAGACGAAGGAGCTCGAAAACAGAGGGCAGATTCAGAGGATGCTGGAGATCGAGCTCGATCGGATTTACCGATTGAACCAGCTCCATGTTCGATCAATCAGAGTGTCGCCGATTCGATCGCTCAGGGAGAAGGAGAAAGAAAAGAAGACCGCAGAATGGCCGTCTCAGGAAGTGGAAGCGGAAGATGAAGCGGAGGAGGAAATGGAGGAATCTGTGGATGAAAACTCACCGCGGAAGCCGGAGAGTTGTTCTGCATCCAGTTCCGAAATCGTTACAGAGAAAACAGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.93

Weight (kDa)

5.32

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 230, 571
AciI CCGC 7 cut(s) 72, 239, 489, 518, 530, 569, 571
AclWI GGATC 1 cut(s) 330
AcoI YGGCCR 2 cut(s) 73, 497
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 3 cut(s) 26, 71, 495
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 2 cut(s) 14, 415
AluBI AGCT 5 cut(s) 91, 247, 352, 394, 421
AluI AGCT 5 cut(s) 91, 247, 352, 394, 421
Alw21I GWGCWC 2 cut(s) 354, 396
Alw26I GTCTC 2 cut(s) 287, 507
AlwI GGATC 1 cut(s) 330
AoxI GGCC 3 cut(s) 62, 73, 497
AspLEI GCGC 2 cut(s) 10, 254
AsuC2I CCSGG 2 cut(s) 28, 46
AsuHPI GGTGA 2 cut(s) 220, 558
AsuII TTCGAA 1 cut(s) 173
BanII GRGCYC 2 cut(s) 354, 396
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 354, 396
BccI CCATC 4 cut(s) 217, 262, 263, 325
BceAI ACGGC 1 cut(s) 484
BcnI CCSGG 2 cut(s) 28, 46
BcoDI GTCTC 2 cut(s) 287, 507
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 2 cut(s) 11, 255
BisI GCNGC 1 cut(s) 73
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 28, 46
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 28, 46
BmsI GCATC 3 cut(s) 297, 369, 602
BpiI GAAGAC 1 cut(s) 491
BpmI CTGGAG 2 cut(s) 71, 404
Bpu10I CCTNAGC 1 cut(s) 461
Bpu1102I GCTNAGC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 28, 46
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 569
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 71, 495
Bse1I ACTGG 1 cut(s) 597
BseDI CCNNGG 1 cut(s) 569
BseGI GGATG 5 cut(s) 172, 282, 384, 562, 593
BseLI CCNNNNNNNGG 3 cut(s) 26, 71, 495
BseMII CTCAG 3 cut(s) 239, 475, 518
BseNI ACTGG 1 cut(s) 597
BseRI GAGGAG 2 cut(s) 257, 548
BseX3I CGGCCG 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 230, 571
Bsh1285I CGRYCG 3 cut(s) 76, 400, 458
BshFI GGCC 3 cut(s) 64, 75, 499
BsiEI CGRYCG 3 cut(s) 76, 400, 458
BsiHKAI GWGCWC 2 cut(s) 354, 396
BsiSI CCGG 7 cut(s) 27, 36, 45, 76, 104, 206, 578
BslI CCNNNNNNNGG 3 cut(s) 26, 71, 495
BsmAI GTCTC 2 cut(s) 287, 507
BsmBI CGTCTC 2 cut(s) 287, 507
BsnI GGCC 3 cut(s) 64, 75, 499
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 354, 396
Bsp143I GATC 6 cut(s) 192, 322, 387, 397, 431, 455
Bsp1720I GCTNAGC 1 cut(s) 248
BspACI CCGC 7 cut(s) 72, 239, 489, 518, 530, 569, 571
BspANI GGCC 3 cut(s) 64, 75, 499
BspCNI CTCAG 3 cut(s) 240, 474, 517
BspFNI CGCG 2 cut(s) 230, 571
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 173
BsrI ACTGG 1 cut(s) 597
BssECI CCNNGG 1 cut(s) 569
BssMI GATC 6 cut(s) 192, 322, 387, 397, 431, 455
BssNI GRCGYC 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 6, 237
BstDEI CTNAG 3 cut(s) 248, 461, 504
BstDSI CCRYGG 1 cut(s) 569
BstF5I GGATG 5 cut(s) 172, 282, 384, 562, 593
BstFNI CGCG 2 cut(s) 230, 571
BstH2I RGCGCY 2 cut(s) 11, 255
BstHHI GCGC 2 cut(s) 10, 254
BstKTI GATC 6 cut(s) 195, 325, 390, 400, 434, 458
BstMAI GTCTC 2 cut(s) 287, 507
BstMBI GATC 6 cut(s) 192, 322, 387, 397, 431, 455
BstMCI CGRYCG 3 cut(s) 76, 400, 458
BstMWI GCNNNNNNNGC 6 cut(s) 32, 41, 88, 145, 227, 236
BstSCI CCNGG 2 cut(s) 26, 44
BstUI CGCG 2 cut(s) 230, 571
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 3 cut(s) 64, 75, 499
BtgI CCRYGG 1 cut(s) 569
BtgZI GCGATG 1 cut(s) 236
BtsCI GGATG 5 cut(s) 172, 282, 384, 562, 593
Cac8I GCNNGC 2 cut(s) 6, 237
CfoI GCGC 2 cut(s) 10, 254
Cfr42I CCGCGG 1 cut(s) 572
CseI GACGC 3 cut(s) 88, 219, 236
Csp6I GTAC 1 cut(s) 143
CviAII CATG 1 cut(s) 425
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 3 cut(s) 248, 461, 504
DpnI GATC 6 cut(s) 194, 324, 389, 399, 433, 457
DpnII GATC 6 cut(s) 192, 322, 387, 397, 431, 455
EaeI YGGCCR 2 cut(s) 73, 497
EagI CGGCCG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 254
Ecl136II GAGCTC 2 cut(s) 352, 394
EclXI CGGCCG 1 cut(s) 73
Eco24I GRGCYC 2 cut(s) 354, 396
Eco52I CGGCCG 1 cut(s) 73
Eco53kI GAGCTC 2 cut(s) 352, 394
Eco57I CTGAAG 1 cut(s) 113
EcoICRI GAGCTC 2 cut(s) 352, 394
EcoT38I GRGCYC 2 cut(s) 354, 396
Esp3I CGTCTC 2 cut(s) 287, 507
FaeI CATG 1 cut(s) 428
FaiI YATR 2 cut(s) 198, 426
FatI CATG 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 5 cut(s) 179, 289, 391, 569, 580
FriOI GRGCYC 2 cut(s) 354, 396
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 66
GlaI GCGC 2 cut(s) 9, 253
GluI GCNGC 1 cut(s) 73
GsuI CTGGAG 2 cut(s) 71, 404
HaeII RGCGCY 2 cut(s) 11, 255
HaeIII GGCC 3 cut(s) 64, 75, 499
HapII CCGG 7 cut(s) 27, 36, 45, 76, 104, 206, 578
HgaI GACGC 3 cut(s) 88, 219, 236
HhaI GCGC 2 cut(s) 10, 254
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 1 cut(s) 428
Hin6I GCGC 2 cut(s) 8, 252
HinP1I GCGC 2 cut(s) 8, 252
HinfI GANTC 6 cut(s) 109, 170, 202, 370, 451, 548
HpaII CCGG 7 cut(s) 27, 36, 45, 76, 104, 206, 578
HphI GGTGA 2 cut(s) 220, 558
Hpy188I TCNGA 9 cut(s) 114, 124, 192, 286, 327, 375, 402, 440, 604
Hpy188III TCNNGA 2 cut(s) 259, 506
Hpy99I CGWCG 2 cut(s) 235, 301
HpyAV CCTTC 2 cut(s) 340, 463
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 4, 340, 593
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 41, 88, 145, 227, 236
HpyF3I CTNAG 3 cut(s) 248, 461, 504
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 428
HspAI GCGC 2 cut(s) 8, 252
KspI CCGCGG 1 cut(s) 572
Kzo9I GATC 6 cut(s) 192, 322, 387, 397, 431, 455
LmnI GCTCC 3 cut(s) 244, 349, 426
LweI GCATC 3 cut(s) 297, 369, 602
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 199, 610
MalI GATC 6 cut(s) 194, 324, 389, 399, 433, 457
MboI GATC 6 cut(s) 192, 322, 387, 397, 431, 455
MboII GAAGA 6 cut(s) 106, 223, 274, 277, 496, 533
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 354, 396
MluCI AATT 2 cut(s) 39, 149
MluI ACGCGT 1 cut(s) 228
MlyI GAGTC 2 cut(s) 103, 196
MmeI TCCRAC 1 cut(s) 137
MspA1I CMGCKG 2 cut(s) 91, 571
MspI CCGG 7 cut(s) 27, 36, 45, 76, 104, 206, 578
MspR9I CCNGG 2 cut(s) 28, 46
MunI CAATTG 1 cut(s) 149
MvnI CGCG 2 cut(s) 230, 571
MwoI GCNNNNNNNGC 6 cut(s) 32, 41, 88, 145, 227, 236
NciI CCSGG 2 cut(s) 28, 46
NdeII GATC 6 cut(s) 192, 322, 387, 397, 431, 455
NlaIII CATG 1 cut(s) 428
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 199
NspV TTCGAA 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PfeI GAWTC 4 cut(s) 170, 370, 451, 548
PkrI GCNGC 1 cut(s) 74
Ple19I CGATCG 2 cut(s) 400, 458
PleI GAGTC 2 cut(s) 103, 196
PpsI GAGTC 2 cut(s) 103, 196
Psp124BI GAGCTC 2 cut(s) 354, 396
PspN4I GGNNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 322
PvuI CGATCG 2 cut(s) 400, 458
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SacI GAGCTC 2 cut(s) 354, 396
SacII CCGCGG 1 cut(s) 572
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 6 cut(s) 192, 322, 387, 397, 431, 455
SchI GAGTC 2 cut(s) 103, 196
ScrFI CCNGG 2 cut(s) 28, 46
SduI GDGCHC 2 cut(s) 354, 396
SetI ASST 5 cut(s) 93, 249, 354, 396, 423
SfaNI GCATC 3 cut(s) 297, 369, 602
Sfr303I CCGCGG 1 cut(s) 572
SfuI TTCGAA 1 cut(s) 173
SgrBI CCGCGG 1 cut(s) 572
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 2 cut(s) 39, 149
SsiI CCGC 7 cut(s) 72, 239, 489, 518, 530, 569, 571
SspMI CTAG 1 cut(s) 66
SstI GAGCTC 2 cut(s) 354, 396
StyD4I CCNGG 2 cut(s) 26, 44
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 6 cut(s) 173, 354, 390, 396, 430, 454
TasI AATT 2 cut(s) 39, 149
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 4 cut(s) 170, 370, 451, 548
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 293, 540, 573
TspGWI ACGGA 1 cut(s) 314
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.