Rw3G008450

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011345
Physical Location & Seq
Forward (+)
7844176 .. 7844990
815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008450.1

Sequence Viewer

Length: 633 bp
ATGCAAGCCCTCCAGCATCATCCACTCGCCGGAGACCACATTCTCCGGCCCAAAAGCGGCCGGACGCCTCTCAAGCCTGTGAACTCTCCAGCAACTCCGGTCAAAGCCGGTCCGGCCACAAAGGCAAAGCCACCAGCACAAGAATGTATCAGCATCTCTCTGTTGGGCCCCTCGAACAAGGAGAACGGGCCGGTTTATGCGGCTCAGATGATCGAAACCGCGGCGATGGACGCTTCTTTGGCGGAGGAGCTGAGTGCGATGAGGAAGAAGCTGGAGAGGATAAGACTGGATAGAGAGAGAACAGAGAAGATGCTCGAGGAAAGGGATGGAATGCTGGATTTGCAGATGAAGGAGATAGAAAACAGAGGTCAAATCCAGAAGATGGTTGAGATTGATGTTGATAGGGTGTTCAGATTGAATCAGCTCCATTCTCAATCCATTAGATTTTCTCCGATTCGGTCTCTGAGAGAAAAGGAGCAGCAAAAGAAGGCCGCTGGAGGATCACCAGCAATAGTGAATTTTGAAGAGATGGAGGAATCAGTAGGTGAAAACACACCACAGAAGCTGAGTTCTGCTACAATTGATTCCGAAAGTGTTACAGCAAGGGATACTCTGATTACCAAATCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.29

Weight (kDa)

7.85

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AccII CGCG 1 cut(s) 221
AciI CCGC 6 cut(s) 57, 200, 219, 221, 242, 492
AclWI GGATC 1 cut(s) 508
AcoI YGGCCR 2 cut(s) 58, 114
AcsI RAATTY 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 29, 56, 382
AgsI TTSAA 2 cut(s) 418, 524
AluBI AGCT 4 cut(s) 250, 271, 424, 565
AluI AGCT 4 cut(s) 250, 271, 424, 565
Alw26I GTCTC 2 cut(s) 27, 465
AlwI GGATC 1 cut(s) 508
AlwNI CAGNNNCTG 1 cut(s) 565
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 6 cut(s) 47, 58, 114, 166, 188, 489
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 478
ApoI RAATTY 1 cut(s) 517
AspS9I GGNCC 5 cut(s) 48, 110, 166, 167, 188
AsuHPI GGTGA 2 cut(s) 495, 557
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 490
BccI CCATC 4 cut(s) 220, 320, 376, 523
BciVI GTATCC 1 cut(s) 601
BcoDI GTCTC 2 cut(s) 27, 465
BfuI GTATCC 1 cut(s) 601
BglI GCCNNNNNGGC 2 cut(s) 113, 122
BisI GCNGC 5 cut(s) 58, 201, 222, 479, 492
BlsI GCNGC 5 cut(s) 59, 202, 223, 480, 493
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 5 cut(s) 48, 110, 166, 167, 188
BmiI GGNNCC 2 cut(s) 168, 169
BmsI GCATC 3 cut(s) 25, 162, 300
BpmI CTGGAG 3 cut(s) 72, 293, 516
BpuEI CTTGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 27, 465
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 56, 382
Bse118I RCCGGY 2 cut(s) 107, 190
Bse1I ACTGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 19, 331
BseLI CCNNNNNNNGG 3 cut(s) 29, 56, 382
BseMII CTCAG 4 cut(s) 218, 242, 455, 557
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 6 cut(s) 49, 60, 116, 168, 190, 491
BsiEI CGRYCG 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
BslI CCNNNNNNNGG 3 cut(s) 29, 56, 382
BsmAI GTCTC 2 cut(s) 27, 465
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 6 cut(s) 49, 60, 116, 168, 190, 491
Bso31I GGTCTC 2 cut(s) 27, 465
BsoBI CYCGRG 1 cut(s) 314
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 210, 500
BspACI CCGC 6 cut(s) 57, 200, 219, 221, 242, 492
BspANI GGCC 6 cut(s) 49, 60, 116, 168, 190, 491
BspCNI CTCAG 4 cut(s) 217, 243, 456, 558
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 168, 169
BspPI GGATC 1 cut(s) 508
BspTNI GGTCTC 2 cut(s) 27, 465
BsrFI RCCGGY 2 cut(s) 107, 190
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 2 cut(s) 107, 190
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 210, 500
BssNI GRCGYC 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 519
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 204, 251, 464, 566
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 19, 331
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 2 cut(s) 213, 503
BstMAI GTCTC 2 cut(s) 27, 465
BstMBI GATC 2 cut(s) 210, 500
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 6 cut(s) 73, 113, 122, 230, 239, 340
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 490
BstZI CGGCCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 6 cut(s) 49, 60, 116, 168, 190, 491
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 2 cut(s) 239, 272
BtsCI GGATG 2 cut(s) 19, 331
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 565
Cfr10I RCCGGY 2 cut(s) 107, 190
Cfr13I GGNCC 5 cut(s) 48, 110, 166, 167, 188
Cfr42I CCGCGG 1 cut(s) 222
CpoI CGGWCCG 1 cut(s) 110
CseI GACGC 2 cut(s) 73, 239
CspI CGGWCCG 1 cut(s) 110
DdeI CTNAG 4 cut(s) 204, 251, 464, 566
DpnI GATC 2 cut(s) 212, 502
DpnII GATC 2 cut(s) 210, 500
EaeI YGGCCR 2 cut(s) 58, 114
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
EciI GGCGGA 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 2 cut(s) 27, 465
Eco47I GGWCC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 170
FaiI YATR 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 58, 201, 222, 479, 492
FokI GGATG 2 cut(s) 6, 338
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 5 cut(s) 58, 201, 222, 479, 492
GluI GCNGC 5 cut(s) 58, 201, 222, 479, 492
GsuI CTGGAG 3 cut(s) 72, 293, 516
HaeIII GGCC 6 cut(s) 49, 60, 116, 168, 190, 491
HapII CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
HgaI GACGC 2 cut(s) 73, 239
Hin1I GRCGYC 1 cut(s) 65
HinfI GANTC 4 cut(s) 418, 454, 536, 584
HpaII CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
HphI GGTGA 2 cut(s) 495, 557
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 6 cut(s) 207, 413, 453, 465, 589, 615
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 343, 481
HpyCH4V TGCA 2 cut(s) 4, 343
HpyF10VI GCNNNNNNNGC 6 cut(s) 73, 113, 122, 230, 239, 340
HpyF3I CTNAG 4 cut(s) 204, 251, 464, 566
Hsp92I GRCGYC 1 cut(s) 65
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 2 cut(s) 210, 500
LmnI GCTCC 3 cut(s) 247, 429, 475
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 3 cut(s) 25, 162, 300
MaeIII GTNAC 1 cut(s) 595
MalI GATC 2 cut(s) 212, 502
MboI GATC 2 cut(s) 210, 500
MboII GAAGA 4 cut(s) 277, 319, 391, 536
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 2 cut(s) 517, 579
MseI TTAA 1 cut(s) 631
MslI CAYNNNNRTG 1 cut(s) 142
MspA1I CMGCKG 2 cut(s) 221, 494
MspI CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 336
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 6 cut(s) 73, 113, 122, 230, 239, 340
NdeII GATC 2 cut(s) 210, 500
NlaIV GGNNCC 2 cut(s) 168, 169
PaeR7I CTCGAG 1 cut(s) 314
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 418, 454, 536, 584
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 5 cut(s) 59, 202, 223, 480, 493
PspN4I GGNNCC 2 cut(s) 168, 169
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 5 cut(s) 48, 110, 166, 167, 188
PspXI VCTCGAGB 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 142
Rsr2I CGGWCCG 1 cut(s) 110
RsrII CGGWCCG 1 cut(s) 110
SacII CCGCGG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 631
SatI GCNGC 5 cut(s) 58, 201, 222, 479, 492
Sau3AI GATC 2 cut(s) 210, 500
Sau96I GGNCC 5 cut(s) 48, 110, 166, 167, 188
SduI GDGCHC 1 cut(s) 170
SetI ASST 6 cut(s) 252, 273, 370, 426, 547, 567
SfaNI GCATC 3 cut(s) 25, 162, 300
Sfr274I CTCGAG 1 cut(s) 314
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 71, 314
SmoI CTYRAG 2 cut(s) 71, 314
Sse9I AATT 2 cut(s) 517, 579
SsiI CCGC 6 cut(s) 57, 200, 219, 221, 242, 492
TaqI TCGA 3 cut(s) 173, 213, 315
TaqII GACCGA 1 cut(s) 447
TasI AATT 2 cut(s) 517, 579
TauI GCSGC 4 cut(s) 60, 203, 224, 494
TfiI GAWTC 4 cut(s) 418, 454, 536, 584
Tru1I TTAA 1 cut(s) 631
Tru9I TTAA 1 cut(s) 631
TseI GCWGC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 517
XhoI CTCGAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.