MD04G1175800.v1.1

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0011345
Physical Location & Seq
Reverse (-)
26688849 .. 26690087
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1175800.v1.1.491

Sequence Viewer

Length: 648 bp
ATGCAGGCGCTTCAATCTCCTGTTGCCGGGATTGCCGGAATTGCCGGAATTGCCGGGAACCAGATTGTTCGGCCTAGAAGCGGCCGGACGCCGCTCCAGCTGAAGAACGCTCCGGCGACTCTGACAAACTCCGATGTCAAAATCAAGCCGGTACAGCAATTGATTGGCGTTGGGGATGATTCGAACAAGGAGAACCGTCCGGTATATGTGACTCCGGTGAAGATTGAGGCGATGGACGCGTCACTGGCGGAGGAGCTGAGCGCGATCAGGAAGAAGATGGAGAGGATGAAATCGGACAGAGAGAGGACGGAGAAGATGCTCAAGGAGAGGGATCTGATGATGGAAATGCAGATGAAGGAGCTCGAAAACAGAGGGCAGATTCAGAGGATGCTGGAGATTGAGCTCGATCGGATTTACCGATTGAACCAGCTCCATGTTCGATCAATCAGAGTGTCGCCGATTCGATCGCTCAGGGAGAAGGAGAAAGAAAAGAAGGCCGCAGAATGGCCGTCGCAGGAAGAGGAAGCGGAAGCGGAAGCGGAAGCGGAGGAGGAAATGGAGGAATCTGTGGATGAAAACTCACCGCAGAGGGCGGAGAGTTGTGCTGCGTCCAGTTCCGAAATCGTTACAGAGAAAACAGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.34

Weight (kDa)

5.23

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 94
AccII CGCG 2 cut(s) 239, 263
AclWI GGATC 1 cut(s) 339
AcoI YGGCCR 2 cut(s) 82, 506
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 3 cut(s) 26, 80, 504
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 14, 424
AluBI AGCT 5 cut(s) 100, 256, 361, 403, 430
AluI AGCT 5 cut(s) 100, 256, 361, 403, 430
Alw21I GWGCWC 2 cut(s) 363, 405
AlwI GGATC 1 cut(s) 339
AoxI GGCC 4 cut(s) 71, 82, 495, 506
ApeKI GCWGC 1 cut(s) 605
AspLEI GCGC 2 cut(s) 10, 263
AsuC2I CCSGG 2 cut(s) 28, 55
AsuHPI GGTGA 2 cut(s) 229, 573
AsuII TTCGAA 1 cut(s) 182
BanII GRGCYC 2 cut(s) 363, 405
Bbv12I GWGCWC 2 cut(s) 363, 405
BbvI GCAGC 1 cut(s) 592
BccI CCATC 3 cut(s) 226, 271, 334
BceAI ACGGC 1 cut(s) 493
BcnI CCSGG 2 cut(s) 28, 55
BfaI CTAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 11
BisI GCNGC 4 cut(s) 82, 92, 498, 606
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 4 cut(s) 83, 93, 499, 607
Bme1390I CCNGG 2 cut(s) 28, 55
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 28, 55
BmsI GCATC 2 cut(s) 306, 378
BpmI CTGGAG 2 cut(s) 80, 413
Bpu10I CCTNAGC 1 cut(s) 470
Bpu1102I GCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 2 cut(s) 28, 55
BsaHI GRCGYC 1 cut(s) 89
BsaWI WCCGGW 2 cut(s) 199, 214
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 80, 504
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 2 cut(s) 249, 612
BseGI GGATG 4 cut(s) 181, 291, 393, 577
BseLI CCNNNNNNNGG 3 cut(s) 26, 80, 504
BseMII CTCAG 2 cut(s) 248, 484
BseNI ACTGG 2 cut(s) 249, 612
BseRI GAGGAG 2 cut(s) 266, 563
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 592
Bsh1236I CGCG 2 cut(s) 239, 263
Bsh1285I CGRYCG 3 cut(s) 85, 409, 467
BshFI GGCC 4 cut(s) 73, 84, 497, 508
BsiEI CGRYCG 3 cut(s) 85, 409, 467
BsiHKAI GWGCWC 2 cut(s) 363, 405
BsiSI CCGG 9 cut(s) 27, 36, 45, 54, 85, 113, 149, 200, 215
BslI CCNNNNNNNGG 3 cut(s) 26, 80, 504
BsnI GGCC 4 cut(s) 73, 84, 497, 508
Bsp119I TTCGAA 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 363, 405
Bsp143I GATC 5 cut(s) 264, 331, 406, 440, 464
Bsp1720I GCTNAGC 1 cut(s) 257
BspANI GGCC 4 cut(s) 73, 84, 497, 508
BspCNI CTCAG 2 cut(s) 249, 483
BspFNI CGCG 2 cut(s) 239, 263
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 2 cut(s) 249, 612
BssAI RCCGGY 1 cut(s) 148
BssMI GATC 5 cut(s) 264, 331, 406, 440, 464
BssNI GRCGYC 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 513
BstACI GRCGYC 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 257, 470
BstF5I GGATG 4 cut(s) 181, 291, 393, 577
BstFNI CGCG 2 cut(s) 239, 263
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 2 cut(s) 10, 263
BstKTI GATC 5 cut(s) 267, 334, 409, 443, 467
BstMBI GATC 5 cut(s) 264, 331, 406, 440, 464
BstMCI CGRYCG 3 cut(s) 85, 409, 467
BstMWI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 97, 154, 236, 245
BstSCI CCNGG 2 cut(s) 26, 53
BstUI CGCG 2 cut(s) 239, 263
BstV1I GCAGC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 4 cut(s) 73, 84, 497, 508
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 4 cut(s) 181, 291, 393, 577
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 10, 263
Cfr10I RCCGGY 1 cut(s) 148
CseI GACGC 4 cut(s) 97, 228, 245, 597
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 434
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 2 cut(s) 257, 470
DpnI GATC 5 cut(s) 266, 333, 408, 442, 466
DpnII GATC 5 cut(s) 264, 331, 406, 440, 464
EaeI YGGCCR 2 cut(s) 82, 506
EagI CGGCCG 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
EciI GGCGGA 2 cut(s) 263, 608
Ecl136II GAGCTC 2 cut(s) 361, 403
EclXI CGGCCG 1 cut(s) 82
Eco24I GRGCYC 2 cut(s) 363, 405
Eco52I CGGCCG 1 cut(s) 82
Eco53kI GAGCTC 2 cut(s) 361, 403
Eco57I CTGAAG 1 cut(s) 122
EcoICRI GAGCTC 2 cut(s) 361, 403
EcoT38I GRGCYC 2 cut(s) 363, 405
FaeI CATG 1 cut(s) 437
FaiI YATR 3 cut(s) 205, 207, 435
FatI CATG 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 82, 92, 498, 606
FokI GGATG 4 cut(s) 188, 298, 400, 584
FriOI GRGCYC 2 cut(s) 363, 405
Fsp4HI GCNGC 4 cut(s) 82, 92, 498, 606
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 9, 262
GluI GCNGC 4 cut(s) 82, 92, 498, 606
GsuI CTGGAG 2 cut(s) 80, 413
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 4 cut(s) 73, 84, 497, 508
HapII CCGG 9 cut(s) 27, 36, 45, 54, 85, 113, 149, 200, 215
HgaI GACGC 4 cut(s) 97, 228, 245, 597
HhaI GCGC 2 cut(s) 10, 263
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 2 cut(s) 8, 261
HinP1I GCGC 2 cut(s) 8, 261
HinfI GANTC 6 cut(s) 118, 179, 211, 379, 460, 563
HpaII CCGG 9 cut(s) 27, 36, 45, 54, 85, 113, 149, 200, 215
HphI GGTGA 2 cut(s) 229, 573
Hpy188I TCNGA 8 cut(s) 123, 133, 295, 336, 384, 411, 449, 619
Hpy188III TCNNGA 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 3 cut(s) 349, 472, 487
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 2 cut(s) 4, 349
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 97, 154, 236, 245
HpyF3I CTNAG 2 cut(s) 257, 470
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 2 cut(s) 8, 261
Kzo9I GATC 5 cut(s) 264, 331, 406, 440, 464
LmnI GCTCC 5 cut(s) 99, 115, 253, 358, 435
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 2 cut(s) 306, 378
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 208, 240, 625
MalI GATC 5 cut(s) 266, 333, 408, 442, 466
MbiI CCGCTC 1 cut(s) 94
MboI GATC 5 cut(s) 264, 331, 406, 440, 464
MboII GAAGA 6 cut(s) 115, 232, 283, 286, 325, 530
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 363, 405
MluCI AATT 3 cut(s) 39, 48, 158
MluI ACGCGT 1 cut(s) 237
MlyI GAGTC 2 cut(s) 112, 205
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 9 cut(s) 27, 36, 45, 54, 85, 113, 149, 200, 215
MspR9I CCNGG 2 cut(s) 28, 55
MunI CAATTG 1 cut(s) 158
MvnI CGCG 2 cut(s) 239, 263
MwoI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 97, 154, 236, 245
NciI CCSGG 2 cut(s) 28, 55
NdeII GATC 5 cut(s) 264, 331, 406, 440, 464
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 2 cut(s) 208, 240
NspV TTCGAA 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PfeI GAWTC 4 cut(s) 179, 379, 460, 563
PkrI GCNGC 4 cut(s) 83, 93, 499, 607
Ple19I CGATCG 2 cut(s) 409, 467
PleI GAGTC 2 cut(s) 112, 205
PpsI GAGTC 2 cut(s) 112, 205
Psp124BI GAGCTC 2 cut(s) 363, 405
PspN4I GGNNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 331
PvuI CGATCG 2 cut(s) 409, 467
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacI GAGCTC 2 cut(s) 363, 405
SatI GCNGC 4 cut(s) 82, 92, 498, 606
Sau3AI GATC 5 cut(s) 264, 331, 406, 440, 464
SchI GAGTC 2 cut(s) 112, 205
ScrFI CCNGG 2 cut(s) 28, 55
SduI GDGCHC 2 cut(s) 363, 405
SetI ASST 5 cut(s) 102, 258, 363, 405, 432
SfaNI GCATC 2 cut(s) 306, 378
SfuI TTCGAA 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 39, 48, 158
SspMI CTAG 1 cut(s) 75
SstI GAGCTC 2 cut(s) 363, 405
StyD4I CCNGG 2 cut(s) 26, 53
TaaI ACNGT 1 cut(s) 197
TaqI TCGA 5 cut(s) 182, 363, 405, 439, 463
TasI AATT 3 cut(s) 39, 48, 158
TauI GCSGC 3 cut(s) 84, 94, 500
TfiI GAWTC 4 cut(s) 179, 379, 460, 563
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 2 cut(s) 208, 240
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 2 cut(s) 208, 240
TspDTI ATGAA 3 cut(s) 302, 368, 588
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 1 cut(s) 249
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.