Rroxscaffold_6G00419640

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011345
Physical Location & Seq
Reverse (-)
41026187 .. 41027205
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419640.1

Sequence Viewer

Length: 636 bp
ATGCAAGCCCTCCAGCATCATCCACTCGCCGGAGACCACATTCTCCGGCCCAAAAGCGGCCGGACGCCTCTCAAGCCTGTGAACTCTCCAGCAACTCCGGTCAATGCCGGTCCGGTCACAAAGGCAAAGCCACCAGCACAAGAGTGTATCAGCATCTCTCTGTTGGGCCCCTCGAACAAGGAGAACGGGCCGGTTTATGCTGCTCAGATGATTGAAACTGCGGCGATGGACGCTTCTTTGGCGGAGGAGCTGAGTGCGATGAGGAAGAAGCTGGAGAGGATAAGATTGGATAGAGAGAGAACAGAGAAGAAGCTTGAGGAAAGGGATGCAATGCTGGATTTGCAGATGAAGGAGATAGAAAACAGAGGTCAAATCCAGAAGATGGTTGAGATTGATGTTGATAGGGTGTTCAGATTGAATCAGCTCCATTCTCAATCCATTAGATTTTCTCCGATTCGGTCTCTGAGAGAAAAGGAGCAGCAAAAGAAGGCCTCTGGATCACCAGCAGTTAAGATAGTGAATTTTGAAGAGATCGAGGAATCAGTGGGTGAAAACACACCACAGAAGCTGAGTTCTGCTTCAATTGATTCCGAAAGTGTTACAGCAAGGGATACTGTGATTACCAAATCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.46

Weight (kDa)

8.63

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 3 cut(s) 57, 221, 242
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 29, 56, 382
AgsI TTSAA 4 cut(s) 215, 418, 527, 582
AleI CACNNNNGTG 1 cut(s) 142
AluBI AGCT 5 cut(s) 250, 271, 313, 424, 568
AluI AGCT 5 cut(s) 250, 271, 313, 424, 568
Alw26I GTCTC 2 cut(s) 27, 465
AlwI GGATC 1 cut(s) 505
AlwNI CAGNNNCTG 1 cut(s) 568
AoxI GGCC 5 cut(s) 47, 58, 166, 188, 489
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 200, 478
ApoI RAATTY 1 cut(s) 520
AspS9I GGNCC 5 cut(s) 48, 110, 166, 167, 188
AsuHPI GGTGA 2 cut(s) 492, 560
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 187, 490
BccI CCATC 2 cut(s) 220, 376
BciVI GTATCC 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 27, 465
BfuI GTATCC 1 cut(s) 604
BisI GCNGC 4 cut(s) 58, 201, 222, 479
BlsI GCNGC 4 cut(s) 59, 202, 223, 480
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 5 cut(s) 48, 110, 166, 167, 188
BmiI GGNNCC 2 cut(s) 168, 169
BmsI GCATC 3 cut(s) 25, 162, 316
BpmI CTGGAG 2 cut(s) 72, 293
BpuEI CTTGAG 2 cut(s) 56, 335
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 27, 465
BsaWI WCCGGW 2 cut(s) 97, 112
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 56, 382
Bse118I RCCGGY 2 cut(s) 107, 190
Bse3DI GCAATG 1 cut(s) 336
BseGI GGATG 2 cut(s) 19, 331
BseLI CCNNNNNNNGG 3 cut(s) 29, 56, 382
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 4 cut(s) 218, 242, 455, 560
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 187, 490
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 49, 60, 168, 190, 491
BsiEI CGRYCG 1 cut(s) 61
BsiSI CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
BslI CCNNNNNNNGG 3 cut(s) 29, 56, 382
BsmAI GTCTC 2 cut(s) 27, 465
BsnI GGCC 5 cut(s) 49, 60, 168, 190, 491
Bso31I GGTCTC 2 cut(s) 27, 465
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 497, 531
BspACI CCGC 3 cut(s) 57, 221, 242
BspANI GGCC 5 cut(s) 49, 60, 168, 190, 491
BspCNI CTCAG 4 cut(s) 217, 243, 456, 561
BspLI GGNNCC 2 cut(s) 168, 169
BspPI GGATC 1 cut(s) 505
BspTNI GGTCTC 2 cut(s) 27, 465
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 2 cut(s) 107, 190
BssAI RCCGGY 2 cut(s) 107, 190
BssMI GATC 2 cut(s) 497, 531
BssNI GRCGYC 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 1 cut(s) 522
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 204, 251, 464, 569
BstF5I GGATG 2 cut(s) 19, 331
BstKTI GATC 2 cut(s) 500, 534
BstMAI GTCTC 2 cut(s) 27, 465
BstMBI GATC 2 cut(s) 497, 531
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 73, 230, 239, 340
BstSLI GKGCMC 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 187, 490
BstZI CGGCCG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 5 cut(s) 49, 60, 168, 190, 491
BtgZI GCGATG 2 cut(s) 239, 272
BtsCI GGATG 2 cut(s) 19, 331
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 568
Cfr10I RCCGGY 2 cut(s) 107, 190
Cfr13I GGNCC 5 cut(s) 48, 110, 166, 167, 188
CpoI CGGWCCG 1 cut(s) 110
CseI GACGC 2 cut(s) 73, 239
CspI CGGWCCG 1 cut(s) 110
DdeI CTNAG 4 cut(s) 204, 251, 464, 569
DpnI GATC 2 cut(s) 499, 533
DpnII GATC 2 cut(s) 497, 531
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
EciI GGCGGA 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 2 cut(s) 27, 465
Eco47I GGWCC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 170
FaiI YATR 1 cut(s) 198
Fnu4HI GCNGC 4 cut(s) 58, 201, 222, 479
FokI GGATG 2 cut(s) 6, 338
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 4 cut(s) 58, 201, 222, 479
GluI GCNGC 4 cut(s) 58, 201, 222, 479
GsuI CTGGAG 2 cut(s) 72, 293
HaeIII GGCC 5 cut(s) 49, 60, 168, 190, 491
HapII CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
HgaI GACGC 2 cut(s) 73, 239
Hin1I GRCGYC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 4 cut(s) 418, 454, 539, 587
HpaII CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
HphI GGTGA 2 cut(s) 492, 560
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 5 cut(s) 207, 413, 453, 465, 592
Hpy188III TCNNGA 2 cut(s) 376, 495
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 343, 481
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4V TGCA 3 cut(s) 4, 329, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 230, 239, 340
HpyF3I CTNAG 4 cut(s) 204, 251, 464, 569
Hsp92I GRCGYC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 497, 531
LmnI GCTCC 3 cut(s) 247, 429, 475
Lsp1109I GCAGC 2 cut(s) 187, 490
LweI GCATC 3 cut(s) 25, 162, 316
MaeIII GTNAC 2 cut(s) 115, 598
MalI GATC 2 cut(s) 499, 533
MboI GATC 2 cut(s) 497, 531
MboII GAAGA 4 cut(s) 277, 319, 391, 539
MfeI CAATTG 1 cut(s) 582
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 2 cut(s) 520, 582
MseI TTAA 2 cut(s) 510, 634
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 7 cut(s) 30, 46, 61, 98, 108, 113, 191
MunI CAATTG 1 cut(s) 582
MwoI GCNNNNNNNGC 4 cut(s) 73, 230, 239, 340
NdeII GATC 2 cut(s) 497, 531
NlaIV GGNNCC 2 cut(s) 168, 169
NmuCI GTSAC 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 142
PceI AGGCCT 1 cut(s) 491
PfeI GAWTC 4 cut(s) 418, 454, 539, 587
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 4 cut(s) 59, 202, 223, 480
PspN4I GGNNCC 2 cut(s) 168, 169
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 5 cut(s) 48, 110, 166, 167, 188
PstNI CAGNNNCTG 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 142
Rsr2I CGGWCCG 1 cut(s) 110
RsrII CGGWCCG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 510, 634
SatI GCNGC 4 cut(s) 58, 201, 222, 479
Sau3AI GATC 2 cut(s) 497, 531
Sau96I GGNCC 5 cut(s) 48, 110, 166, 167, 188
SduI GDGCHC 1 cut(s) 170
SetI ASST 6 cut(s) 252, 273, 315, 370, 426, 570
SfaNI GCATC 3 cut(s) 25, 162, 316
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 71, 314
SmoI CTYRAG 2 cut(s) 71, 314
Sse9I AATT 2 cut(s) 520, 582
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 3 cut(s) 57, 221, 242
StuI AGGCCT 1 cut(s) 491
TaaI ACNGT 1 cut(s) 616
TaqI TCGA 2 cut(s) 173, 534
TaqII GACCGA 1 cut(s) 447
TasI AATT 2 cut(s) 520, 582
TauI GCSGC 2 cut(s) 60, 224
TfiI GAWTC 4 cut(s) 418, 454, 539, 587
Tru1I TTAA 2 cut(s) 510, 634
Tru9I TTAA 2 cut(s) 510, 634
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 200, 478
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 1 cut(s) 549
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.