pycom12g17750

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011345
Physical Location & Seq
Reverse (-)
20163345 .. 20164573
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17750.2

Sequence Viewer

Length: 915 bp
ATGGAGAAAATCCTTAACGAGGGCTGTGATTATTACTCTGCAAACTCCTCTATTTCTTCTGATGACAAAATTACCCTCCGTATCCATATTACTGTTGAAACAGTTAATTTTACCGCCTTCTATATAATTACGCGTCGTTATGTGGTAGGACCCAATGAGCGTGCGGGTCCCGCCATGATCGTGTCTCTCAAACAAACTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTACAATTCCCTTTTTTCTCTCTCTCAAATATAACAACCTGAACTGCCATAGCATCTTTCACACATCCACCAAAGCAATGCACACGCTTCAATCTTCCGTCACCGGAATCGCCGGGAACCAGATTGTTCGGCCTAAAAGTGGCCGGACGCCGCTTCAGCCGAAGAACACTCTGGTGACTCCGACGAACTCCGATCTCAAAATCAAGCCGGTTCACCAATGGATTGGCGTTGTCGATGATTCAAATAAGGAGAACCCTCCGATGTATGCGACTCCGGTGAAGATTGAGGCGATGGAAGTGTCGCTGGCGGAGGAGCTGAGCGCGATCCGGAAGAAGACGGAGAGGATGAAATCGGACAGAGAGAAGACGGAGAAGATGCTTAAGGAGAAGGATATGGTGATGGAAATACAGATGAAGGAGCTCGAAAACAGAGGGCAGATTCAGAAGATGCTCGAGACCGAGCTCGATCGGATTTACCGATTGAACCAGCTCCATGTTCAATCAATTAGACCGATTCGATCGCTCAGGGAGAAGGAGGAAGAAAAGAAGGCCGATGAATCGCCATCGCAGGAAGTGGAGGTGGAAGCGGAGGAGGATATGGAGGAATCTGTGGATGAAAACTCACCGCAGAAGCCGGAGAGTTGTGCTGCTTCCAATTCCGAAAATGTTACAGAGGAAAATGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.56

Weight (kDa)

5.48

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 133, 548
AccIII TCCGGA 1 cut(s) 552
AciI CCGC 7 cut(s) 114, 164, 171, 377, 533, 812, 851
AclWI GGATC 1 cut(s) 544
AcoI YGGCCR 1 cut(s) 367
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 19, 365
AflII CTTAAG 1 cut(s) 605
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 98, 317, 468, 709, 725
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 4 cut(s) 541, 646, 688, 715
AluI AGCT 4 cut(s) 541, 646, 688, 715
Alw21I GWGCWC 2 cut(s) 648, 690
Alw26I GTCTC 2 cut(s) 189, 674
AlwI GGATC 1 cut(s) 544
Ama87I CYCGRG 1 cut(s) 677
Aor13HI TCCGGA 1 cut(s) 552
AoxI GGCC 3 cut(s) 356, 367, 774
ApeKI GCWGC 1 cut(s) 872
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 149, 167
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 6 cut(s) 319, 412, 431, 514, 634, 840
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 2 cut(s) 149, 167
BanII GRGCYC 2 cut(s) 648, 690
BbsI GAAGAC 2 cut(s) 566, 596
Bbv12I GWGCWC 2 cut(s) 648, 690
BbvI GCAGC 1 cut(s) 859
BccI CCATC 3 cut(s) 511, 619, 796
BciVI GTATCC 1 cut(s) 92
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 189, 674
BfrI CTTAAG 1 cut(s) 605
BfuI GTATCC 1 cut(s) 92
BisI GCNGC 2 cut(s) 377, 873
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 2 cut(s) 378, 874
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 2 cut(s) 149, 167
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 2 cut(s) 149, 167
BmiI GGNNCC 4 cut(s) 151, 168, 169, 344
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 3 cut(s) 288, 591, 663
BpiI GAAGAC 2 cut(s) 566, 596
Bpu10I CCTNAGC 1 cut(s) 749
Bpu1102I GCTNAGC 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 674
BsaWI WCCGGW 3 cut(s) 329, 499, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 365
Bse118I RCCGGY 1 cut(s) 433
Bse3DI GCAATG 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 552
BseGI GGATG 3 cut(s) 290, 576, 844
BseLI CCNNNNNNNGG 2 cut(s) 19, 365
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 533, 763
BseRI GAGGAG 3 cut(s) 37, 551, 830
BseXI GCAGC 1 cut(s) 859
Bsh1236I CGCG 2 cut(s) 133, 548
Bsh1285I CGRYCG 2 cut(s) 694, 746
BshFI GGCC 3 cut(s) 358, 369, 776
BsiEI CGRYCG 2 cut(s) 694, 746
BsiHKAI GWGCWC 2 cut(s) 648, 690
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 7 cut(s) 330, 339, 370, 434, 500, 553, 860
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 19, 365
BsmAI GTCTC 2 cut(s) 189, 674
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 3 cut(s) 358, 369, 776
Bso31I GGTCTC 1 cut(s) 674
BsoBI CYCGRG 1 cut(s) 677
Bsp1286I GDGCHC 2 cut(s) 648, 690
Bsp13I TCCGGA 1 cut(s) 552
Bsp143I GATC 5 cut(s) 177, 418, 549, 691, 743
Bsp1720I GCTNAGC 1 cut(s) 542
BspACI CCGC 7 cut(s) 114, 164, 171, 377, 533, 812, 851
BspANI GGCC 3 cut(s) 358, 369, 776
BspCNI CTCAG 2 cut(s) 534, 762
BspEI TCCGGA 1 cut(s) 552
BspFNI CGCG 2 cut(s) 133, 548
BspLI GGNNCC 4 cut(s) 151, 168, 169, 344
BspPI GGATC 1 cut(s) 544
BspTI CTTAAG 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 433
BssMI GATC 5 cut(s) 177, 418, 549, 691, 743
BssNI GRCGYC 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 94, 103
BstACI GRCGYC 1 cut(s) 374
BstAFI CTTAAG 1 cut(s) 605
BstC8I GCNNGC 2 cut(s) 162, 531
BstDEI CTNAG 2 cut(s) 542, 749
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 3 cut(s) 290, 576, 844
BstFNI CGCG 2 cut(s) 133, 548
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 5 cut(s) 180, 421, 552, 694, 746
BstMAI GTCTC 2 cut(s) 189, 674
BstMBI GATC 5 cut(s) 177, 418, 549, 691, 743
BstMCI CGRYCG 2 cut(s) 694, 746
BstMWI GCNNNNNNNGC 2 cut(s) 170, 382
BstSCI CCNGG 1 cut(s) 338
BstUI CGCG 2 cut(s) 133, 548
BstV1I GCAGC 1 cut(s) 859
BstV2I GAAGAC 2 cut(s) 566, 596
BstXI CCANNNNNNTGG 1 cut(s) 449
BsuI GTATCC 1 cut(s) 92
BsuRI GGCC 3 cut(s) 358, 369, 776
BtgZI GCGATG 2 cut(s) 530, 774
BtsCI GGATG 3 cut(s) 290, 576, 844
Cac8I GCNNGC 2 cut(s) 162, 531
CfoI GCGC 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 149, 167
CseI GACGC 2 cut(s) 122, 382
CviAII CATG 2 cut(s) 175, 719
DdeI CTNAG 2 cut(s) 542, 749
DpnI GATC 5 cut(s) 179, 420, 551, 693, 745
DpnII GATC 5 cut(s) 177, 418, 549, 691, 743
EaeI YGGCCR 1 cut(s) 367
EciI GGCGGA 1 cut(s) 548
Ecl136II GAGCTC 2 cut(s) 646, 688
Eco24I GRGCYC 2 cut(s) 648, 690
Eco31I GGTCTC 1 cut(s) 674
Eco47I GGWCC 2 cut(s) 149, 167
Eco53kI GAGCTC 2 cut(s) 646, 688
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 677
EcoICRI GAGCTC 2 cut(s) 646, 688
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 2 cut(s) 149, 167
EcoT38I GRGCYC 2 cut(s) 648, 690
FaeI CATG 2 cut(s) 178, 722
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 174, 718
FauI CCCGC 2 cut(s) 157, 178
Fnu4HI GCNGC 2 cut(s) 377, 873
FokI GGATG 3 cut(s) 277, 583, 851
FriOI GRGCYC 2 cut(s) 648, 690
Fsp4HI GCNGC 2 cut(s) 377, 873
GlaI GCGC 1 cut(s) 547
GluI GCNGC 2 cut(s) 377, 873
HaeIII GGCC 3 cut(s) 358, 369, 776
HapII CCGG 7 cut(s) 330, 339, 370, 434, 500, 553, 860
HgaI GACGC 2 cut(s) 122, 382
HhaI GCGC 1 cut(s) 548
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 2 cut(s) 178, 722
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HinfI GANTC 8 cut(s) 333, 403, 464, 496, 664, 739, 782, 830
HpaII CCGG 7 cut(s) 330, 339, 370, 434, 500, 553, 860
HphI GGTGA 6 cut(s) 319, 412, 431, 514, 634, 840
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 8 cut(s) 61, 408, 418, 486, 580, 669, 696, 886
Hpy188III TCNNGA 2 cut(s) 553, 679
Hpy8I GTNNAC 1 cut(s) 439
Hpy99I CGWCG 2 cut(s) 138, 412
HpyAV CCTTC 5 cut(s) 127, 607, 634, 751, 766
HpyCH4III ACNGT 2 cut(s) 94, 103
HpyCH4V TGCA 2 cut(s) 41, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 382
HpyF3I CTNAG 2 cut(s) 542, 749
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 2 cut(s) 178, 722
HspAI GCGC 1 cut(s) 546
KflI GGGWCCC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 552
Kzo9I GATC 5 cut(s) 177, 418, 549, 691, 743
LmnI GCTCC 3 cut(s) 538, 643, 720
Lsp1109I GCAGC 1 cut(s) 859
LweI GCATC 3 cut(s) 288, 591, 663
MaeIII GTNAC 3 cut(s) 325, 400, 892
MalI GATC 5 cut(s) 179, 420, 551, 693, 745
MboI GATC 5 cut(s) 177, 418, 549, 691, 743
MhlI GDGCHC 2 cut(s) 648, 690
MluCI AATT 6 cut(s) 69, 106, 126, 231, 729, 880
MluI ACGCGT 1 cut(s) 131
MlyI GAGTC 2 cut(s) 397, 490
MmeI TCCRAC 1 cut(s) 431
MroI TCCGGA 1 cut(s) 552
MseI TTAA 3 cut(s) 15, 105, 606
MslI CAYNNNNRTG 2 cut(s) 179, 398
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 7 cut(s) 330, 339, 370, 434, 500, 553, 860
MspR9I CCNGG 1 cut(s) 340
MvnI CGCG 2 cut(s) 133, 548
MwoI GCNNNNNNNGC 2 cut(s) 170, 382
NciI CCSGG 1 cut(s) 340
NdeII GATC 5 cut(s) 177, 418, 549, 691, 743
NlaIII CATG 2 cut(s) 178, 722
NlaIV GGNNCC 4 cut(s) 151, 168, 169, 344
NmuCI GTSAC 2 cut(s) 325, 400
OliI CACNNNNGTG 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 700
PfeI GAWTC 6 cut(s) 333, 464, 664, 739, 782, 830
PkrI GCNGC 2 cut(s) 378, 874
Ple19I CGATCG 2 cut(s) 694, 746
PleI GAGTC 2 cut(s) 397, 490
PpsI GAGTC 2 cut(s) 397, 490
PpuMI RGGWCCY 2 cut(s) 149, 167
Psp124BI GAGCTC 2 cut(s) 648, 690
Psp5II RGGWCCY 2 cut(s) 149, 167
PspN4I GGNNCC 4 cut(s) 151, 168, 169, 344
PspPI GGNCC 2 cut(s) 149, 167
PspPPI RGGWCCY 2 cut(s) 149, 167
PvuI CGATCG 2 cut(s) 694, 746
RseI CAYNNNNRTG 2 cut(s) 179, 398
SacI GAGCTC 2 cut(s) 648, 690
SaqAI TTAA 3 cut(s) 15, 105, 606
SatI GCNGC 2 cut(s) 377, 873
Sau3AI GATC 5 cut(s) 177, 418, 549, 691, 743
Sau96I GGNCC 2 cut(s) 149, 167
SchI GAGTC 2 cut(s) 397, 490
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 2 cut(s) 648, 690
SetI ASST 6 cut(s) 267, 543, 648, 690, 717, 807
SfaNI GCATC 3 cut(s) 288, 591, 663
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 2 cut(s) 149, 167
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 2 cut(s) 179, 398
SmlI CTYRAG 2 cut(s) 605, 677
SmoI CTYRAG 2 cut(s) 605, 677
Sse9I AATT 6 cut(s) 69, 106, 126, 231, 729, 880
SsiI CCGC 7 cut(s) 114, 164, 171, 377, 533, 812, 851
SstI GAGCTC 2 cut(s) 648, 690
StyD4I CCNGG 1 cut(s) 338
TaaI ACNGT 2 cut(s) 94, 103
TaqI TCGA 5 cut(s) 459, 648, 678, 690, 742
TaqII GACCGA 2 cut(s) 698, 751
TasI AATT 6 cut(s) 69, 106, 126, 231, 729, 880
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 6 cut(s) 333, 464, 664, 739, 782, 830
Tru1I TTAA 3 cut(s) 15, 105, 606
Tru9I TTAA 3 cut(s) 15, 105, 606
TseFI GTSAC 2 cut(s) 325, 400
TseI GCWGC 1 cut(s) 872
Tsp45I GTSAC 2 cut(s) 325, 400
TspDTI ATGAA 4 cut(s) 587, 653, 795, 855
TspGWI ACGGA 4 cut(s) 68, 313, 578, 608
Vha464I CTTAAG 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 149, 167
XagI CCTNNNNNAGG 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.