FvH4_6g09670

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011345
Physical Location & Seq
Forward (+)
5759387 .. 5760464
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09670.t1

Sequence Viewer

Length: 636 bp
ATGCAAGCCCTCCAGCATCATCCCCTCGCTGGAGACCACATTCTCCGGCCCAAAAGCGGCCGGACACCACTCAAGCCTGTGAACTCTCCAGCAACTCCGGTCAATGCCGGTCCGGTTTCTAAGGCCAAGCCACCAGGACAAGAATGTATCAACATCTCTGTGTTTGGACCGTCGAACAAGGAGAACGGGCAGGTTTATGGGGCTCAGATGATTGAAACTGCTGCGATGGACGCGTCTTTGGCGGAGGAGCTGAGTGCTATGAGGAAGAAGCTGGAGAGGATAAGGTTGGATAGAGAGAGAACGGAGAAGATGCTCAAAGAAAGAGAAGCAATGTTGGATTTGAAGACGAAGGAGATTGAAAACAGAGGTCAAATCCAGAAGATGGTTGAGATTGATGTTGATAGGGTGTTCAGATTGAATCAGCTCCATTCTCAGTCCATTAGATTTTCTCCGATTCGGTCTCTAAGACAGAAGGAGCAGCAGAAGAAGGCCACTGGATCAACACCAGTTAAGATAGTGAATTTTGAGGAGATGGAGGAATCAGTAGGGGAAAACACACCACAGAAGCTGAGTTCTGCTTCAATCGAATCCGAAATTGTTACAGCAAGAGAAACTGTGATTACCGAATCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.57

Weight (kDa)

8.97

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01910 AT5G01910
fragaria_vesca FvH4_6g09670
malus_domestica MD04G1175800.v1.1 MD05G1222900.v1.1 MD12G1190200.v1.1
prunus_persica Prupe.6G295300_v2.0.a1
pyrus_communis pycom04g15510 pycom12g17750
rosa_chinensis RchiOBHm_Chr3g0460321
rosa_laevigata RLG00000025024
rosa_multiflora Rmu_sc0000449.1_g000011 Rmu_sc0010030.1_g000003
rosa_roxburghii Rroxscaffold_6G00419640
rosa_rugosa Rorug03G0041600
rosa_samantha Rh3AG099400 Rh3BG103400 Rh3CG105000 Rh3DG104700
rosa_wichuraiana Rw3G008450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AccB7I CCANNNNNTGG 1 cut(s) 382
AccII CGCG 1 cut(s) 233
AciI CCGC 2 cut(s) 57, 242
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 520
AfiI CCNNNNNNNGG 3 cut(s) 29, 56, 382
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 5 cut(s) 215, 343, 359, 418, 582
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 4 cut(s) 250, 271, 424, 568
AluI AGCT 4 cut(s) 250, 271, 424, 568
Alw26I GTCTC 2 cut(s) 27, 465
AlwI GGATC 1 cut(s) 505
AlwNI CAGNNNCTG 1 cut(s) 568
AoxI GGCC 4 cut(s) 47, 58, 123, 489
ApeKI GCWGC 2 cut(s) 221, 478
ApoI RAATTY 1 cut(s) 520
AspS9I GGNCC 3 cut(s) 48, 110, 167
AvaII GGWCC 2 cut(s) 110, 167
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 208, 490
BccI CCATC 3 cut(s) 220, 376, 526
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 27, 465
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 3 cut(s) 58, 222, 479
BlsI GCNGC 3 cut(s) 59, 223, 480
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 2 cut(s) 110, 167
BmgT120I GGNCC 3 cut(s) 48, 110, 167
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 25, 300
BpiI GAAGAC 1 cut(s) 350
BpmI CTGGAG 3 cut(s) 51, 72, 293
BpuEI CTTGAG 1 cut(s) 56
BsaI GGTCTC 2 cut(s) 27, 465
BsaWI WCCGGW 2 cut(s) 97, 112
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 56, 382
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 499, 506
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 3 cut(s) 29, 56, 382
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 4 cut(s) 218, 242, 446, 560
BseNI ACTGG 2 cut(s) 499, 506
BseRI GAGGAG 2 cut(s) 260, 542
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 208, 490
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 4 cut(s) 49, 60, 125, 491
BsiEI CGRYCG 1 cut(s) 61
BsiSI CCGG 5 cut(s) 46, 61, 98, 108, 113
BslI CCNNNNNNNGG 3 cut(s) 29, 56, 382
BsmAI GTCTC 2 cut(s) 27, 465
BsnI GGCC 4 cut(s) 49, 60, 125, 491
Bso31I GGTCTC 2 cut(s) 27, 465
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 497
BspACI CCGC 2 cut(s) 57, 242
BspANI GGCC 4 cut(s) 49, 60, 125, 491
BspCNI CTCAG 4 cut(s) 217, 243, 445, 561
BspFNI CGCG 1 cut(s) 233
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 505
BspTNI GGTCTC 2 cut(s) 27, 465
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 2 cut(s) 499, 506
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 171, 616
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 7 cut(s) 120, 204, 251, 432, 464, 569, 633
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 1 cut(s) 500
BstMAI GTCTC 2 cut(s) 27, 465
BstMBI GATC 1 cut(s) 497
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 230, 239
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 208, 490
BstV2I GAAGAC 1 cut(s) 350
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 4 cut(s) 49, 60, 125, 491
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 492
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 568
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 3 cut(s) 48, 110, 167
CpoI CGGWCCG 1 cut(s) 110
CseI GACGC 2 cut(s) 222, 239
CspI CGGWCCG 1 cut(s) 110
DdeI CTNAG 7 cut(s) 120, 204, 251, 432, 464, 569, 633
DpnI GATC 1 cut(s) 499
DpnII GATC 1 cut(s) 497
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
EciI GGCGGA 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 205
Eco31I GGTCTC 2 cut(s) 27, 465
Eco47I GGWCC 2 cut(s) 110, 167
Eco52I CGGCCG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 205
FaiI YATR 2 cut(s) 198, 260
Fnu4HI GCNGC 3 cut(s) 58, 222, 479
FokI GGATG 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 3 cut(s) 58, 222, 479
GluI GCNGC 3 cut(s) 58, 222, 479
GsuI CTGGAG 3 cut(s) 51, 72, 293
HaeIII GGCC 4 cut(s) 49, 60, 125, 491
HapII CCGG 5 cut(s) 46, 61, 98, 108, 113
HgaI GACGC 2 cut(s) 222, 239
HinfI GANTC 5 cut(s) 418, 454, 539, 587, 626
HpaII CCGG 5 cut(s) 46, 61, 98, 108, 113
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 4 cut(s) 207, 413, 453, 592
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 343, 466, 481
HpyCH4III ACNGT 2 cut(s) 171, 616
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 239
HpyF3I CTNAG 7 cut(s) 120, 204, 251, 432, 464, 569, 633
Kzo9I GATC 1 cut(s) 497
LmnI GCTCC 3 cut(s) 247, 429, 475
Lsp1109I GCAGC 2 cut(s) 208, 490
LweI GCATC 2 cut(s) 25, 300
MaeIII GTNAC 1 cut(s) 598
MalI GATC 1 cut(s) 499
MboI GATC 1 cut(s) 497
MboII GAAGA 5 cut(s) 277, 319, 355, 391, 496
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 2 cut(s) 520, 594
MluI ACGCGT 1 cut(s) 231
MmeI TCCRAC 2 cut(s) 267, 315
MnlI CCTC 8 cut(s) 20, 35, 238, 255, 270, 359, 520, 529
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 5 cut(s) 46, 61, 98, 108, 113
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 230, 239
NdeII GATC 1 cut(s) 497
PfeI GAWTC 5 cut(s) 418, 454, 539, 587, 626
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 3 cut(s) 59, 223, 480
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspPI GGNCC 3 cut(s) 48, 110, 167
PstNI CAGNNNCTG 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 158
Rsr2I CGGWCCG 1 cut(s) 110
RsrII CGGWCCG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 3 cut(s) 58, 222, 479
Sau3AI GATC 1 cut(s) 497
Sau96I GGNCC 3 cut(s) 48, 110, 167
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 205
SetI ASST 7 cut(s) 195, 252, 273, 287, 370, 426, 570
SfaNI GCATC 2 cut(s) 25, 300
SinI GGWCC 2 cut(s) 110, 167
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 520, 594
SsiI CCGC 2 cut(s) 57, 242
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 171, 616
TaqI TCGA 2 cut(s) 173, 585
TaqII GACCGA 1 cut(s) 447
TasI AATT 2 cut(s) 520, 594
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 5 cut(s) 418, 454, 539, 587, 626
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 499
TseI GCWGC 2 cut(s) 221, 478
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 499
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 110, 167
XapI RAATTY 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.