AT5G02850

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
652048 .. 653763
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02850.1

Sequence Viewer

Length: 1281 bp
ATGCTACAGCATCAGATCGTACAATCTCCGGCGAGATTAGGGTTAACAGGTCCTGGCTCTCCTTCCGTACAAAATCCGACGCCTACTCGTCATGGCCATCCAACCTCTTCTTCATCTTCCCAATCTCAGCACCAACAGATCCAACAACAGCCTAATCTACTTCCTTCCTCCACCGTCGCCGCCGCTTCCTCAGCCTCAGCTTCGGCGGCTGTTTCATCCTCCGCCTTGCTATCGCTCCTTCCTCCATTACCGCGAGCTCAAGCTCTTCTCCAGCAGATGGCGGTTTTGACATCTAAGCTCTTCGACGTCTCTCCCAATCGAGCTATCTGGCTCTCAGCTTTCCGTGGCTCTCTCCCTTCGTTCCTCTCCTCACACTCGTTACCACCTCCGCCGCCGCTTGAAAACCCTAGTCCTTCATCCACGAAGGAGATCCTCTCTCAATTCAATTCCCTCCAGACTCAGCTCTTCGAAGCCGTTACAGAGCTTCAAGAGATCCTCGATCTGCAAGACGCGAAGCAGAAGGTGGCGCGTGAGATCAAATCCAAAGATTCATCTCTTCTCGCTTTCGCTAACAAACTCAAGGATGCAGAACGTGTTCTCGATATGCTTGTTGACGACTACTCCGATTACCGCAAACCAAAACGAAGCAAAATTGAAGAAGATGACGAAGACAATGATAATGAGTCTTCTTCTTCTTCAACCACAGTTTCGTCTCAGCTCAAGTTAAAGGACATATTAGCTTACGCTCACAAGATTAGCTACACCACATTTGCTCCGCCGGAATTCGGTGCAGGGCAAGCACCTCTCCGTGGTGCATTACCACCAGCTCCACAAGACGAACAAATGAGAGCTTCCCAGCTCTACACTTTCGCTGATCTTGATATCGGTCTGCCGAAAACAGTAGAAAACATGGAGAAGAAGGTTGAAGCACTGATTGAGCCACCACCACCACCAGAAGCTATGGATATATCTGCTATTCACAACCTGCTTCCGCCGAATATCGCAGTTCCTTCAGGATGGAAACCAGGAATGCCAGTCGAATTGCCTAGAGATTTACCATTGCCACCTCCTGGATGGAAACCAGGCGACCCAGTTGTGTTACCGCCACTGGAGTCAATTGCTGCACCTAGAGCAGAGGATCATCAACATATGAGACCTTCTCAGGGACTCCACAGACCGCCTGATGTCATACAGGTCCGAGCTGTTCAACTTGACATTTTGGAGGATGATGATAGCAGTGATTACAGCAGCGATGATGCAAGCTCAGATGATGAGGATTAA

Protein Analysis

426

Amino Acids

46.16

Weight (kDa)

4.88

Isoelectric Point (pI)

70.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med4 PF10018 144 - 290 1.8e-10 Vitamin-D-receptor interacting Mediator subunit 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 993
AccB7I CCANNNNNTGG 2 cut(s) 277, 1070
AccII CGCG 3 cut(s) 253, 512, 529
AclWI GGATC 4 cut(s) 133, 424, 487, 1146
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 1 cut(s) 996
AcyI GRCGYC 2 cut(s) 80, 306
AfaI GTAC 2 cut(s) 21, 69
AfiI CCNNNNNNNGG 5 cut(s) 277, 785, 809, 1070, 1163
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 7 cut(s) 401, 445, 488, 656, 699, 926, 1208
AjnI CCWGG 4 cut(s) 52, 1024, 1069, 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 3 cut(s) 313, 717, 1147
AlwI GGATC 4 cut(s) 133, 424, 487, 1146
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 1121, 1248
ApoI RAATTY 1 cut(s) 782
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 2 cut(s) 50, 1195
AsuII TTCGAA 1 cut(s) 468
AvaII GGWCC 2 cut(s) 50, 1195
BalI TGGCCA 1 cut(s) 96
BanII GRGCYC 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 675, 678
Bbv12I GWGCWC 1 cut(s) 259
BbvCI CCTCAGC 2 cut(s) 190, 196
BbvI GCAGC 2 cut(s) 1108, 1260
BccI CCATC 4 cut(s) 105, 271, 1011, 1068
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 4 cut(s) 54, 1026, 1071, 1083
BcoDI GTCTC 3 cut(s) 313, 717, 1147
BfaI CTAG 3 cut(s) 408, 1047, 1128
BfmI CTRYAG 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 993
BisI GCNGC 7 cut(s) 180, 183, 207, 392, 395, 1122, 1249
BlsI GCNGC 7 cut(s) 181, 184, 208, 393, 396, 1123, 1250
Bme1390I CCNGG 4 cut(s) 54, 1026, 1071, 1083
Bme18I GGWCC 2 cut(s) 50, 1195
BmgT120I GGNCC 2 cut(s) 50, 1195
BmrFI CCNGG 4 cut(s) 54, 1026, 1071, 1083
BmrI ACTGGG 1 cut(s) 1085
BmsI GCATC 3 cut(s) 19, 574, 1246
BmuI ACTGGG 1 cut(s) 1085
BpiI GAAGAC 2 cut(s) 675, 678
BplI GAGNNNNNCTC 4 cut(s) 419, 451, 1144, 1176
BpmI CTGGAG 3 cut(s) 254, 437, 1130
Bpu10I CCTNAGC 2 cut(s) 190, 196
Bpu14I TTCGAA 1 cut(s) 468
BpuEI CTTGAG 3 cut(s) 243, 563, 704
BsaHI GRCGYC 2 cut(s) 80, 306
BsaI GGTCTC 1 cut(s) 1147
BsaJI CCNNGG 2 cut(s) 343, 808
BsaXI ACNNNNNCTCC 4 cut(s) 605, 635, 757, 787
Bsc4I CCNNNNNNNGG 5 cut(s) 277, 785, 809, 1070, 1163
Bse1I ACTGG 3 cut(s) 1034, 1091, 1113
Bse3DI GCAATG 1 cut(s) 1058
BseBI CCWGG 4 cut(s) 54, 1026, 1071, 1083
BseDI CCNNGG 2 cut(s) 343, 808
BseGI GGATG 7 cut(s) 97, 215, 416, 589, 1022, 1079, 1231
BseLI CCNNNNNNNGG 5 cut(s) 277, 785, 809, 1070, 1163
BseMI GCAATG 1 cut(s) 1058
BseMII CTCAG 8 cut(s) 140, 204, 210, 348, 473, 728, 1175, 1278
BseNI ACTGG 3 cut(s) 1034, 1091, 1113
BseRI GAGGAG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 1108, 1260
BseYI CCCAGC 1 cut(s) 855
BsgI GTGCAG 2 cut(s) 810, 1107
Bsh1236I CGCG 3 cut(s) 253, 512, 529
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 2 cut(s) 29, 779
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 5 cut(s) 277, 785, 809, 1070, 1163
BsmAI GTCTC 3 cut(s) 313, 717, 1147
BsmBI CGTCTC 2 cut(s) 313, 717
BsmFI GGGAC 1 cut(s) 1179
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 1147
Bsp119I TTCGAA 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 8 cut(s) 15, 138, 429, 492, 499, 534, 874, 1138
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 8 cut(s) 139, 203, 209, 347, 472, 727, 1174, 1277
BspFNI CGCG 3 cut(s) 253, 512, 529
BspMI ACCTGC 1 cut(s) 993
BspPI GGATC 4 cut(s) 133, 424, 487, 1146
BspQI GCTCTTC 3 cut(s) 270, 305, 470
BspT104I TTCGAA 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 1147
BsrDI GCAATG 1 cut(s) 1058
BsrI ACTGG 3 cut(s) 1034, 1091, 1113
BssECI CCNNGG 2 cut(s) 343, 808
BssMI GATC 8 cut(s) 15, 138, 429, 492, 499, 534, 874, 1138
BssNI GRCGYC 2 cut(s) 80, 306
Bst2UI CCWGG 4 cut(s) 54, 1026, 1071, 1083
Bst4CI ACNGT 3 cut(s) 175, 706, 901
Bst6I CTCTTC 5 cut(s) 112, 270, 305, 470, 561
BstACI GRCGYC 2 cut(s) 80, 306
BstBI TTCGAA 1 cut(s) 468
BstC8I GCNNGC 3 cut(s) 255, 798, 1261
BstDEI CTNAG 9 cut(s) 126, 190, 196, 294, 334, 459, 714, 1161, 1264
BstDSI CCRYGG 2 cut(s) 343, 808
BstF5I GGATG 7 cut(s) 97, 215, 416, 589, 1022, 1079, 1231
BstFNI CGCG 3 cut(s) 253, 512, 529
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 8 cut(s) 18, 141, 432, 495, 502, 537, 877, 1141
BstMAI GTCTC 3 cut(s) 313, 717, 1147
BstMBI GATC 8 cut(s) 15, 138, 429, 492, 499, 534, 874, 1138
BstMWI GCNNNNNNNGC 4 cut(s) 191, 206, 797, 1130
BstNI CCWGG 4 cut(s) 54, 1026, 1071, 1083
BstSCI CCNGG 4 cut(s) 52, 1024, 1069, 1081
BstSFI CTRYAG 1 cut(s) 5
BstUI CGCG 3 cut(s) 253, 512, 529
BstV1I GCAGC 2 cut(s) 1108, 1260
BstV2I GAAGAC 2 cut(s) 675, 678
BstX2I RGATCY 3 cut(s) 138, 429, 492
BstYI RGATCY 3 cut(s) 138, 429, 492
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 2 cut(s) 343, 808
BtgZI GCGATG 1 cut(s) 1266
BtsCI GGATG 7 cut(s) 97, 215, 416, 589, 1022, 1079, 1231
BtsI GCAGTG 1 cut(s) 1243
BtsIMutI CAGTG 3 cut(s) 929, 1106, 1243
BveI ACCTGC 1 cut(s) 993
Cac8I GCNNGC 3 cut(s) 255, 798, 1261
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 529
Cfr13I GGNCC 2 cut(s) 50, 1195
CseI GACGC 2 cut(s) 88, 518
Csp6I GTAC 2 cut(s) 20, 68
CviAII CATG 2 cut(s) 92, 910
CviQI GTAC 2 cut(s) 20, 68
DdeI CTNAG 9 cut(s) 126, 190, 196, 294, 334, 459, 714, 1161, 1264
DpnI GATC 8 cut(s) 17, 140, 431, 494, 501, 536, 876, 1140
DpnII GATC 8 cut(s) 15, 138, 429, 492, 499, 534, 874, 1138
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 5 cut(s) 112, 270, 305, 470, 561
EarI CTCTTC 5 cut(s) 112, 270, 305, 470, 561
EciI GGCGGA 4 cut(s) 211, 378, 765, 981
Ecl136II GAGCTC 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 1147
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 2 cut(s) 50, 1195
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 996
EcoICRI GAGCTC 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 782
EcoRII CCWGG 4 cut(s) 52, 1024, 1069, 1081
EcoRV GATATC 1 cut(s) 883
EcoT38I GRGCYC 1 cut(s) 259
Esp3I CGTCTC 2 cut(s) 313, 717
FaeI CATG 2 cut(s) 95, 913
FaiI YATR 9 cut(s) 93, 605, 734, 911, 962, 968, 1149, 1151, 1190
FaqI GGGAC 1 cut(s) 1179
FatI CATG 2 cut(s) 91, 909
FauNDI CATATG 1 cut(s) 1149
Fnu4HI GCNGC 7 cut(s) 180, 183, 207, 392, 395, 1122, 1249
FokI GGATG 7 cut(s) 84, 202, 403, 596, 1029, 1086, 1238
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 7 cut(s) 180, 183, 207, 392, 395, 1122, 1249
FspBI CTAG 3 cut(s) 408, 1047, 1128
GlaI GCGC 1 cut(s) 528
GluI GCNGC 7 cut(s) 180, 183, 207, 392, 395, 1122, 1249
GsaI CCCAGC 1 cut(s) 859
GsuI CTGGAG 3 cut(s) 254, 437, 1130
HaeIII GGCC 1 cut(s) 96
HapII CCGG 2 cut(s) 29, 779
HgaI GACGC 2 cut(s) 88, 518
HhaI GCGC 1 cut(s) 529
Hin1I GRCGYC 2 cut(s) 80, 306
Hin1II CATG 2 cut(s) 95, 913
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HincII GTYRAC 2 cut(s) 45, 613
HindII GTYRAC 2 cut(s) 45, 613
HinfI GANTC 5 cut(s) 457, 548, 683, 1112, 1167
HpaI GTTAAC 1 cut(s) 45
HpaII CCGG 2 cut(s) 29, 779
Hpy166II GTNNAC 2 cut(s) 45, 613
Hpy188I TCNGA 5 cut(s) 15, 78, 625, 1199, 1267
Hpy188III TCNNGA 5 cut(s) 454, 488, 599, 878, 1014
Hpy8I GTNNAC 2 cut(s) 45, 613
Hpy99I CGWCG 3 cut(s) 82, 179, 308
HpyCH4III ACNGT 3 cut(s) 175, 706, 901
HpyCH4IV ACGT 2 cut(s) 306, 592
HpyCH4V TGCA 6 cut(s) 505, 587, 791, 815, 1124, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 206, 797, 1130
HpyF3I CTNAG 9 cut(s) 126, 190, 196, 294, 334, 459, 714, 1161, 1264
HpySE526I ACGT 2 cut(s) 306, 592
Hsp92I GRCGYC 2 cut(s) 80, 306
Hsp92II CATG 2 cut(s) 95, 913
HspAI GCGC 1 cut(s) 527
KspAI GTTAAC 1 cut(s) 45
Kzo9I GATC 8 cut(s) 15, 138, 429, 492, 499, 534, 874, 1138
LguI GCTCTTC 3 cut(s) 270, 305, 470
LmnI GCTCC 3 cut(s) 240, 778, 832
Lsp1109I GCAGC 2 cut(s) 1108, 1260
LweI GCATC 3 cut(s) 19, 574, 1246
MaeI CTAG 3 cut(s) 408, 1047, 1128
MaeII ACGT 2 cut(s) 306, 592
MaeIII GTNAC 3 cut(s) 378, 475, 1098
MalI GATC 8 cut(s) 17, 140, 431, 494, 501, 536, 876, 1140
MboI GATC 8 cut(s) 15, 138, 429, 492, 499, 534, 874, 1138
MfeI CAATTG 1 cut(s) 1116
MflI RGATCY 3 cut(s) 138, 429, 492
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 6 cut(s) 440, 445, 651, 782, 1040, 1116
MluNI TGGCCA 1 cut(s) 96
MlyI GAGTC 4 cut(s) 451, 692, 1121, 1161
MmeI TCCRAC 3 cut(s) 101, 125, 166
Mox20I TGGCCA 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 594
MscI TGGCCA 1 cut(s) 96
MseI TTAA 3 cut(s) 44, 725, 1279
Msp20I TGGCCA 1 cut(s) 96
MspI CCGG 2 cut(s) 29, 779
MspR9I CCNGG 4 cut(s) 54, 1026, 1071, 1083
MunI CAATTG 1 cut(s) 1116
Mva1269I GAATGC 1 cut(s) 1035
MvaI CCWGG 4 cut(s) 54, 1026, 1071, 1083
MvnI CGCG 3 cut(s) 253, 512, 529
MwoI GCNNNNNNNGC 4 cut(s) 191, 206, 797, 1130
NdeI CATATG 1 cut(s) 1149
NdeII GATC 8 cut(s) 15, 138, 429, 492, 499, 534, 874, 1138
NlaIII CATG 2 cut(s) 95, 913
NspV TTCGAA 1 cut(s) 468
PciSI GCTCTTC 3 cut(s) 270, 305, 470
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PctI GAATGC 1 cut(s) 1035
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 1 cut(s) 548
PflMI CCANNNNNTGG 2 cut(s) 277, 1070
PfoI TCCNGGA 1 cut(s) 1069
PkrI GCNGC 7 cut(s) 181, 184, 208, 393, 396, 1123, 1250
PleI GAGTC 4 cut(s) 451, 691, 1120, 1161
PpsI GAGTC 4 cut(s) 451, 691, 1120, 1161
PpuMI RGGWCCY 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 4 cut(s) 52, 1024, 1069, 1081
PspFI CCCAGC 1 cut(s) 855
PspGI CCWGG 4 cut(s) 52, 1024, 1069, 1081
PspPI GGNCC 2 cut(s) 50, 1195
PspPPI RGGWCCY 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 3 cut(s) 138, 429, 492
RsaI GTAC 2 cut(s) 21, 69
RsaNI GTAC 2 cut(s) 20, 68
SacI GAGCTC 1 cut(s) 259
SapI GCTCTTC 3 cut(s) 270, 305, 470
SaqAI TTAA 3 cut(s) 44, 725, 1279
SatI GCNGC 7 cut(s) 180, 183, 207, 392, 395, 1122, 1249
Sau3AI GATC 8 cut(s) 15, 138, 429, 492, 499, 534, 874, 1138
Sau96I GGNCC 2 cut(s) 50, 1195
SchI GAGTC 4 cut(s) 451, 692, 1121, 1161
ScrFI CCNGG 4 cut(s) 54, 1026, 1071, 1083
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 3 cut(s) 19, 574, 1246
SfcI CTRYAG 1 cut(s) 5
SfuI TTCGAA 1 cut(s) 468
SinI GGWCC 2 cut(s) 50, 1195
SmlI CTYRAG 3 cut(s) 258, 578, 719
SmoI CTYRAG 3 cut(s) 258, 578, 719
Sse9I AATT 6 cut(s) 440, 445, 651, 782, 1040, 1116
SspMI CTAG 3 cut(s) 408, 1047, 1128
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 4 cut(s) 52, 1024, 1069, 1081
TaaI ACNGT 3 cut(s) 175, 706, 901
TaiI ACGT 2 cut(s) 309, 595
TaqI TCGA 6 cut(s) 303, 319, 468, 498, 600, 1038
TaqII GACCGA 1 cut(s) 875
TasI AATT 6 cut(s) 440, 445, 651, 782, 1040, 1116
TauI GCSGC 5 cut(s) 182, 185, 209, 394, 397
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 3 cut(s) 44, 725, 1279
Tru9I TTAA 3 cut(s) 44, 725, 1279
TscAI CASTG 3 cut(s) 936, 1113, 1243
TseI GCWGC 2 cut(s) 1121, 1248
TspDTI ATGAA 4 cut(s) 102, 204, 405, 540
TspGWI ACGGA 3 cut(s) 55, 332, 797
TspRI CASTG 3 cut(s) 936, 1113, 1243
Van91I CCANNNNNTGG 2 cut(s) 277, 1070
VpaK11BI GGWCC 2 cut(s) 50, 1195
XapI RAATTY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 1 cut(s) 1071
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 3 cut(s) 408, 1047, 1128
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.