Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003446

Physical Location & Seq

Genomic Coordinates Forward (+)

38774715 .. 38775592

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATGATGAAAGGTGCTAATTTCCCTACAGCTGCTACTTTTGCCCTATTGGCATTGGCAACCTTCCACCTTGTATCTGCCTCTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTTAACACCACACAAACTGCTGCTTCTGCCGTGTTTGTGAATGGAAAATTCTGCAAGGACCCAAAGCTTGCAACAGCAGATGATTTCTTCTTTTCCGGGCTCCAGATTCCCCGAAACACATCAAATCCGGTTGGTTCCAACGTCACCGCAGCTAATGTGGAGCAAATAGCAGGGCTAAACACTCTTGGGATATCACTGGCTCGCATAGACTATGCACCAAATGGCGGACTAAACCCTCCTCACACCCACCCTCGAGCCACCGAAGTCCTTATGGTGATGGAAGGGACTCTCTACGTTGGCTTCGTTACATCCAACCCTGACAACCGCCTCTTCACTAAAGTGTTGTCCACGGGAGATGTGTTTGTCTTCCCAGTCGGTCTCATTCACTTCCAGTTCAACATCGGAAAGGTTAAAGCCGTAGCGATTGCCGCTCTTAGCAGCCAGAATCCAGGTGTCATCACCATAGCCAATGCAGTGTTCGGCTCCAACCCTCCAATCAACCCAGATGTTCTCACCAAGGCCTTCCAAGTTGACAACAATGTCGTTCAATATCTCCAGAAACAGTTCTGGTTCAACAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med4

Protein Analysis

233

Amino Acids

24.89

Weight (kDa)

6.89

Isoelectric Point (pI)

17.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	72 - 222	3.3e-54	Cupin
Cupin_2	PF07883	108 - 181	4.5e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02850
fragaria_vesca	FvH4_7g16920 FvH4_7g16920 FvH4_7g16920 FvH4_7g16920 FvH4_7g17650 FvH4_7g17650 FvH4_7g17650
prunus_persica	Prupe.2G197600_v2.0.a1 Prupe.2G197600_v2.0.a1 Prupe.2G197600_v2.0.a1
pyrus_communis	pycom01g11270
rosa_chinensis	RchiOBHm_Chr1g0360161 RchiOBHm_Chr1g0361081
rosa_laevigata	RLG00000027749 RLG00000027825
rosa_multiflora	Rmu_sc0003333.1_g000008 Rmu_sc0007813.1_g000004 Rmu_ssc0000368.1_g000045
rosa_roxburghii	Rroxscaffold_4G00295440 Rroxscaffold_4G00296330
rosa_rugosa	Rorug01G0275400 Rorug01G0275500 Rorug01G0285400 Rorug01G0285500
rosa_samantha	Rh1AG289200 Rh1AG296800 Rh1BG254900 Rh1BG261100 Rh1CG272200 Rh1CG278400 Rh1DG284300 Rh1DG291100
rosa_wichuraiana	Rw0G002900 Rw1G025660 Rw1G026220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	656
AccBSI	CCGCTC	1 cut(s)	548
AciI	CCGC	4 cut(s)	264, 342, 442, 546
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	514, 665, 691
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	3 cut(s)	32, 184, 269
AluI	AGCT	3 cut(s)	32, 184, 269
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	4 cut(s)	32, 137, 266, 555
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	4 cut(s)	253, 403, 568, 622
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	4 cut(s)	19, 124, 278, 567
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	2 cut(s)	131, 518
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	5 cut(s)	33, 138, 267, 546, 556
BlsI	GCNGC	5 cut(s)	34, 139, 268, 547, 557
Bme1390I	CCNGG	2 cut(s)	214, 567
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	4 cut(s)	177, 218, 253, 601
BmrFI	CCNGG	2 cut(s)	214, 567
BmrI	ACTGGG	1 cut(s)	482
BmuI	ACTGGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	475
BpmI	CTGGAG	2 cut(s)	203, 656
BpuMI	CCSGG	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	465, 633
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	3 cut(s)	318, 488, 508
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	465, 633
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseNI	ACTGG	3 cut(s)	318, 488, 508
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	4 cut(s)	19, 124, 278, 567
BshFI	GGCC	1 cut(s)	638
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	213, 245
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	638
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	4 cut(s)	264, 342, 442, 546
BspANI	GGCC	1 cut(s)	638
BspLI	GGNNCC	4 cut(s)	177, 218, 253, 601
BspPI	GGATC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	548
BsrI	ACTGG	3 cut(s)	318, 488, 508
BssECI	CCNNGG	2 cut(s)	465, 633
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	681
Bst6I	CTCTTC	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	186, 319
BstDEI	CTNAG	1 cut(s)	551
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	425
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 50, 143, 545
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	2 cut(s)	212, 565
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	4 cut(s)	19, 124, 278, 567
BstV2I	GAAGAC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	425
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	311, 597
Cac8I	GCNNGC	2 cut(s)	186, 319
Cfr13I	GGNCC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DrdI	GACNNNNNNGTC	1 cut(s)	656
DseDI	GACNNNNNNGTC	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	633
Eco147I	AGGCCT	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	565
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	633
FaiI	YATR	4 cut(s)	323, 330, 389, 581
FaqI	GGGAC	1 cut(s)	415
Fnu4HI	GCNGC	5 cut(s)	33, 138, 267, 546, 556
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	5 cut(s)	33, 138, 267, 546, 556
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	5 cut(s)	33, 138, 267, 546, 556
GsuI	CTGGAG	2 cut(s)	203, 656
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	2 cut(s)	213, 245
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	3 cut(s)	223, 403, 562
HpaII	CCGG	2 cut(s)	213, 245
HphI	GGTGA	4 cut(s)	253, 403, 568, 622
Hpy166II	GTNNAC	2 cut(s)	465, 649
Hpy188I	TCNGA	2 cut(s)	85, 521
Hpy188III	TCNNGA	2 cut(s)	220, 673
Hpy8I	GTNNAC	2 cut(s)	465, 649
HpyAV	CCTTC	3 cut(s)	73, 392, 649
HpyCH4III	ACNGT	1 cut(s)	681
HpyCH4IV	ACGT	2 cut(s)	258, 411
HpyCH4V	TGCA	4 cut(s)	171, 188, 332, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 50, 143, 545
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	2 cut(s)	258, 411
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	3 cut(s)	222, 277, 605
Lsp1109I	GCAGC	4 cut(s)	19, 124, 278, 567
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	2 cut(s)	258, 411
MaeIII	GTNAC	2 cut(s)	259, 421
MalI	GATC	1 cut(s)	87
MbiI	CCGCTC	1 cut(s)	548
MboI	GATC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	196, 439, 475
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	19, 164, 697
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	3 cut(s)	279, 453, 627
MnlI	CCTC	7 cut(s)	91, 105, 363, 366, 378, 455, 618
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	3 cut(s)	120, 528, 700
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	213, 245
MspR9I	CCNGG	2 cut(s)	214, 567
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	4 cut(s)	41, 50, 143, 545
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	4 cut(s)	177, 218, 253, 601
NmuCI	GTSAC	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	2 cut(s)	223, 562
PkrI	GCNGC	5 cut(s)	34, 139, 268, 547, 557
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	4 cut(s)	177, 218, 253, 601
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	120, 528, 700
SatI	GCNGC	5 cut(s)	33, 138, 267, 546, 556
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	214, 567
SduI	GDGCHC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	3 cut(s)	19, 164, 697
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	4 cut(s)	264, 342, 442, 546
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	2 cut(s)	212, 565
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	1 cut(s)	681
TaiI	ACGT	2 cut(s)	261, 414
TaqI	TCGA	1 cut(s)	370
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	3 cut(s)	19, 164, 697
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	223, 562
Tru1I	TTAA	3 cut(s)	120, 528, 700
Tru9I	TTAA	3 cut(s)	120, 528, 700
TscAI	CASTG	2 cut(s)	318, 597
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	4 cut(s)	32, 137, 266, 555
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	318, 597
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.