Prupe.2G197600_v2.0.a1

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
23460704 .. 23462841
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G197600.2

Sequence Viewer

Length: 1191 bp
ATGCTGCAACCCCAAATTGTACAATCCCCAGCTAGGTTAGGCCTAACAAACCCCACTTCACCCTCTCTTCAAAACCCTACCCCTCCGAAACTCCCTTCGCAGCAACCCAGTCTCTCCCCAACCCTTCTCTCTCTCCTCGCACCCCTCCCTAGAGCCCAATCCCTTCTCATCCAAATGGCCTCCCTTGCCTCTAAACTCTTTGAAGTCTCGCCGAATCGATCCCTTTGGCTCAATGCATTCCGTGGGAACTTTCCGACCTTTCTTTCTTCCCAATCCCAATCACTGCCCTCAACCGCACCTGACTCTTCTCCTTCCTCCACCAAAGAGATCCTGTCCCAGTTCACTGCCCTTCAAACCCAACTCTTTGAGGCTGTTGCTGAACTCCAAGAAATTCTTGATCTTCAGGACGCTAAGCTGAAAATTGCACGCGAAGTGCGGTCCAAGGATGCTGCACTTCTTTCTTTTTCCAAGAAACTCAAGGATGTCGAGCAGGTTCTTGATAATCTTGTTGATGATTACTCTGATTTTAGCCGCCCCAAACGGACAAAACAGGAGGATGGTGCAGAAGATGATTCTTCATGCACCACCACCACTGTTGCATCTCAGTTGAATTTATCAGATATTTTATCATATGCCCACCGGATAAGCTACACAACCTTTGCACCACCAGAATTTGGGGCTGGACAAGCTCCTCTTCGTGGGGCACTCCCGCCTGCCCCACAGGATGAGCAAATGCGTGCTTCTCAGCTATACAATTTTGCAAACCTTGATGTTGGTTTACCTAAGACAGTCGAGAGGGAGGAGGAAACAATTCACACAATATTAGAGGCCCCGCGTCCTGAGCCAACAGAAGCCAATCAACTTCCCAAGCTGGGTGCACTCCAGGGTCTACTTCCTCCAAATATCACAGTTCCGTCAGGTTGGATACCAGGGATGCCTGTGGAGTTGCCTAGCGATGTACCTGTGCCCCCACCTGGATGGAAGCCTGGGGACCCAGTGCCTTTGCCCCCACTTGGATCTGCTCCAGCTCCCAGGGTCGAAGAGCAACAATTACGGCCTAATGCTCATCAACCATTACCTAAAGCACCAGCGACAATACAGGTTCAGCATGTTCAGCTGGATATTCCGGACCAAGACGATGATAGTAGTGATTATACTAGCGATGATGCAAGCTCAGAAGATGAGGATTGA

Protein Analysis

397

Amino Acids

42.98

Weight (kDa)

4.59

Isoelectric Point (pI)

75.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 674
AccI GTMKAC 1 cut(s) 889
AccII CGCG 2 cut(s) 429, 835
AccIII TCCGGA 1 cut(s) 1126
AciI CCGC 5 cut(s) 294, 436, 532, 710, 833
AclWI GGATC 3 cut(s) 213, 322, 1024
AcsI RAATTY 3 cut(s) 390, 610, 671
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 2 cut(s) 21, 960
AfiI CCNNNNNNNGG 6 cut(s) 33, 674, 698, 872, 974, 1013
AgsI TTSAA 4 cut(s) 71, 203, 353, 610
AjnI CCWGG 5 cut(s) 882, 928, 973, 985, 1031
AluBI AGCT 9 cut(s) 32, 415, 648, 689, 748, 871, 1028, 1117, 1173
AluI AGCT 9 cut(s) 32, 415, 648, 689, 748, 871, 1028, 1117, 1173
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 2 cut(s) 116, 211
Alw44I GTGCAC 1 cut(s) 876
AlwI GGATC 3 cut(s) 213, 322, 1024
Aor13HI TCCGGA 1 cut(s) 1126
AoxI GGCC 4 cut(s) 40, 177, 828, 1055
ApaLI GTGCAC 1 cut(s) 876
ApeKI GCWGC 3 cut(s) 4, 100, 449
ApoI RAATTY 3 cut(s) 390, 610, 671
Asp700I GAANNNNTTC 1 cut(s) 810
AspS9I GGNCC 4 cut(s) 438, 829, 991, 1129
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 3 cut(s) 438, 991, 1129
BaeGI GKGCMC 3 cut(s) 706, 880, 969
BanII GRGCYC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 880
BbvI GCAGC 2 cut(s) 112, 436
BccI CCATC 2 cut(s) 551, 972
BceAI ACGGC 1 cut(s) 1070
BciT130I CCWGG 5 cut(s) 884, 930, 975, 987, 1033
BciVI GTATCC 1 cut(s) 918
BcoDI GTCTC 2 cut(s) 116, 211
BfaI CTAG 4 cut(s) 33, 150, 951, 1158
BfuAI ACCTGC 1 cut(s) 481
BfuI GTATCC 1 cut(s) 918
BisI GCNGC 4 cut(s) 5, 101, 450, 532
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 4 cut(s) 6, 102, 451, 533
Bme1390I CCNGG 5 cut(s) 884, 930, 975, 987, 1033
Bme18I GGWCC 3 cut(s) 438, 991, 1129
BmgT120I GGNCC 4 cut(s) 438, 829, 991, 1129
BmiI GGNNCC 3 cut(s) 831, 992, 993
BmrFI CCNGG 5 cut(s) 884, 930, 975, 987, 1033
BmrI ACTGGG 3 cut(s) 102, 331, 989
BmsI GCATC 4 cut(s) 436, 608, 924, 1156
BmuI ACTGGG 3 cut(s) 102, 331, 989
BpmI CTGGAG 2 cut(s) 866, 1008
Bpu10I CCTNAGC 1 cut(s) 840
Bpu1102I GCTNAGC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 217
BsaJI CCNNGG 7 cut(s) 241, 441, 883, 929, 986, 1031, 1032
BsaWI WCCGGW 2 cut(s) 639, 1126
Bsc4I CCNNNNNNNGG 6 cut(s) 33, 674, 698, 872, 974, 1013
Bse1I ACTGG 3 cut(s) 108, 337, 995
BseAI TCCGGA 1 cut(s) 1126
BseBI CCWGG 5 cut(s) 884, 930, 975, 987, 1033
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 7 cut(s) 241, 441, 883, 929, 986, 1031, 1032
BseGI GGATG 7 cut(s) 168, 451, 487, 562, 730, 939, 983
BseLI CCNNNNNNNGG 6 cut(s) 33, 674, 698, 872, 974, 1013
BseMII CTCAG 4 cut(s) 617, 758, 831, 1188
BseNI ACTGG 3 cut(s) 108, 337, 995
BseRI GAGGAG 3 cut(s) 125, 681, 815
BseSI GKGCMC 3 cut(s) 706, 880, 969
BseXI GCAGC 2 cut(s) 112, 436
BseYI CCCAGC 2 cut(s) 28, 871
BsgI GTGCAG 2 cut(s) 435, 582
Bsh1236I CGCG 2 cut(s) 429, 835
BshFI GGCC 4 cut(s) 42, 179, 830, 1057
BshVI ATCGAT 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 880
BsiSI CCGG 2 cut(s) 640, 1127
BslFI GGGAC 2 cut(s) 319, 1004
BslI CCNNNNNNNGG 6 cut(s) 33, 674, 698, 872, 974, 1013
BsmAI GTCTC 2 cut(s) 116, 211
BsmFI GGGAC 2 cut(s) 319, 1004
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 4 cut(s) 42, 179, 830, 1057
Bsp1286I GDGCHC 4 cut(s) 157, 706, 880, 969
Bsp13I TCCGGA 1 cut(s) 1126
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 4 cut(s) 218, 327, 397, 1016
Bsp1720I GCTNAGC 1 cut(s) 411
BspACI CCGC 5 cut(s) 294, 436, 532, 710, 833
BspANI GGCC 4 cut(s) 42, 179, 830, 1057
BspCNI CTCAG 4 cut(s) 616, 757, 832, 1187
BspDI ATCGAT 1 cut(s) 217
BspEI TCCGGA 1 cut(s) 1126
BspFNI CGCG 2 cut(s) 429, 835
BspLI GGNNCC 3 cut(s) 831, 992, 993
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 3 cut(s) 213, 322, 1024
BspQI GCTCTTC 1 cut(s) 1035
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 3 cut(s) 108, 337, 995
BssECI CCNNGG 7 cut(s) 241, 441, 883, 929, 986, 1031, 1032
BssMI GATC 4 cut(s) 218, 327, 397, 1016
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 5 cut(s) 884, 930, 975, 987, 1033
Bst4CI ACNGT 3 cut(s) 595, 790, 910
Bst6I CTCTTC 4 cut(s) 72, 310, 699, 1035
BstAUI TGTACA 1 cut(s) 19
BstC8I GCNNGC 4 cut(s) 427, 714, 738, 1171
BstDEI CTNAG 6 cut(s) 411, 603, 744, 783, 840, 1174
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 7 cut(s) 168, 451, 487, 562, 730, 939, 983
BstFNI CGCG 2 cut(s) 429, 835
BstKTI GATC 4 cut(s) 221, 330, 400, 1019
BstMAI GTCTC 2 cut(s) 116, 211
BstMBI GATC 4 cut(s) 218, 327, 397, 1016
BstMWI GCNNNNNNNGC 4 cut(s) 185, 686, 841, 1114
BstNI CCWGG 5 cut(s) 884, 930, 975, 987, 1033
BstNSI RCATGY 1 cut(s) 1112
BstSCI CCNGG 5 cut(s) 882, 928, 973, 985, 1031
BstSLI GKGCMC 3 cut(s) 706, 880, 969
BstUI CGCG 2 cut(s) 429, 835
BstV1I GCAGC 2 cut(s) 112, 436
BstX2I RGATCY 2 cut(s) 327, 1016
BstXI CCANNNNNNTGG 1 cut(s) 978
BstYI RGATCY 2 cut(s) 327, 1016
Bsu15I ATCGAT 1 cut(s) 217
BsuI GTATCC 1 cut(s) 918
BsuRI GGCC 4 cut(s) 42, 179, 830, 1057
BsuTUI ATCGAT 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 2 cut(s) 969, 1176
BtsCI GGATG 7 cut(s) 168, 451, 487, 562, 730, 939, 983
BtsI GCAGTG 2 cut(s) 281, 342
BtsIMutI CAGTG 4 cut(s) 281, 342, 591, 1002
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 4 cut(s) 427, 714, 738, 1171
Cfr13I GGNCC 4 cut(s) 438, 829, 991, 1129
ClaI ATCGAT 1 cut(s) 217
CseI GACGC 2 cut(s) 416, 824
Csp6I GTAC 2 cut(s) 20, 959
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 2 cut(s) 579, 1109
CviQI GTAC 2 cut(s) 20, 959
DdeI CTNAG 6 cut(s) 411, 603, 744, 783, 840, 1174
DpnI GATC 4 cut(s) 220, 329, 399, 1018
DpnII GATC 4 cut(s) 218, 327, 397, 1016
Eam1104I CTCTTC 4 cut(s) 72, 310, 699, 1035
EarI CTCTTC 4 cut(s) 72, 310, 699, 1035
Eco130I CCWWGG 1 cut(s) 441
Eco147I AGGCCT 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 157
Eco47I GGWCC 3 cut(s) 438, 991, 1129
Eco57I CTGAAG 1 cut(s) 386
EcoO109I RGGNCCY 2 cut(s) 829, 991
EcoRII CCWGG 5 cut(s) 882, 928, 973, 985, 1031
EcoT14I CCWWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 2 cut(s) 582, 1112
FaiI YATR 6 cut(s) 580, 631, 633, 751, 1110, 1155
FalI AAGNNNNNCTT 4 cut(s) 378, 410, 678, 710
FaqI GGGAC 2 cut(s) 319, 1004
FatI CATG 2 cut(s) 578, 1108
FauI CCCGC 2 cut(s) 717, 840
FauNDI CATATG 1 cut(s) 631
FblI GTMKAC 1 cut(s) 889
Fnu4HI GCNGC 4 cut(s) 5, 101, 450, 532
FokI GGATG 7 cut(s) 155, 458, 494, 569, 737, 946, 990
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 4 cut(s) 5, 101, 450, 532
FspBI CTAG 4 cut(s) 33, 150, 951, 1158
GluI GCNGC 4 cut(s) 5, 101, 450, 532
GsaI CCCAGC 2 cut(s) 32, 875
GsuI CTGGAG 2 cut(s) 866, 1008
HaeIII GGCC 4 cut(s) 42, 179, 830, 1057
HapII CCGG 2 cut(s) 640, 1127
HgaI GACGC 2 cut(s) 416, 824
Hin1II CATG 2 cut(s) 582, 1112
HinfI GANTC 3 cut(s) 214, 302, 572
HpaII CCGG 2 cut(s) 640, 1127
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 4 cut(s) 342, 779, 878, 890
Hpy188I TCNGA 5 cut(s) 87, 255, 523, 619, 1177
Hpy188III TCNNGA 6 cut(s) 395, 404, 497, 793, 839, 1127
Hpy8I GTNNAC 4 cut(s) 342, 779, 878, 890
HpyAV CCTTC 5 cut(s) 105, 134, 173, 321, 359
HpyCH4III ACNGT 3 cut(s) 595, 790, 910
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 686, 841, 1114
HpyF3I CTNAG 6 cut(s) 411, 603, 744, 783, 840, 1174
Hsp92II CATG 2 cut(s) 582, 1112
KflI GGGWCCC 1 cut(s) 991
Kpn2I TCCGGA 1 cut(s) 1126
Kzo9I GATC 4 cut(s) 218, 327, 397, 1016
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 3 cut(s) 694, 1027, 1033
Lsp1109I GCAGC 2 cut(s) 112, 436
LweI GCATC 4 cut(s) 436, 608, 924, 1156
MaeI CTAG 4 cut(s) 33, 150, 951, 1158
MalI GATC 4 cut(s) 220, 329, 399, 1018
MboI GATC 4 cut(s) 218, 327, 397, 1016
MboII GAAGA 9 cut(s) 59, 258, 297, 392, 567, 578, 686, 1052, 1190
MflI RGATCY 2 cut(s) 327, 1016
MhlI GDGCHC 4 cut(s) 157, 706, 880, 969
MluCI AATT 8 cut(s) 15, 390, 420, 610, 671, 754, 810, 1049
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 278, 902
Mph1103I ATGCAT 1 cut(s) 238
MroI TCCGGA 1 cut(s) 1126
MroXI GAANNNNTTC 1 cut(s) 810
MslI CAYNNNNRTG 2 cut(s) 173, 976
MspA1I CMGCKG 1 cut(s) 1117
MspI CCGG 2 cut(s) 640, 1127
MspR9I CCNGG 5 cut(s) 884, 930, 975, 987, 1033
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 5 cut(s) 884, 930, 975, 987, 1033
MvnI CGCG 2 cut(s) 429, 835
MwoI GCNNNNNNNGC 4 cut(s) 185, 686, 841, 1114
NdeI CATATG 1 cut(s) 631
NdeII GATC 4 cut(s) 218, 327, 397, 1016
NlaIII CATG 2 cut(s) 582, 1112
NlaIV GGNNCC 3 cut(s) 831, 992, 993
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 1112
PasI CCCWGGG 1 cut(s) 1032
PceI AGGCCT 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 1035
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 2 cut(s) 214, 572
PflMI CCANNNNNTGG 1 cut(s) 674
PkrI GCNGC 4 cut(s) 6, 102, 451, 533
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 991
Psp5II RGGWCCY 1 cut(s) 991
Psp6I CCWGG 5 cut(s) 882, 928, 973, 985, 1031
PspFI CCCAGC 2 cut(s) 28, 871
PspGI CCWGG 5 cut(s) 882, 928, 973, 985, 1031
PspN4I GGNNCC 3 cut(s) 831, 992, 993
PspPI GGNCC 4 cut(s) 438, 829, 991, 1129
PspPPI RGGWCCY 1 cut(s) 991
PsuI RGATCY 2 cut(s) 327, 1016
PvuII CAGCTG 1 cut(s) 1117
RsaI GTAC 2 cut(s) 21, 960
RsaNI GTAC 2 cut(s) 20, 959
RseI CAYNNNNRTG 2 cut(s) 173, 976
SapI GCTCTTC 1 cut(s) 1035
SatI GCNGC 4 cut(s) 5, 101, 450, 532
Sau3AI GATC 4 cut(s) 218, 327, 397, 1016
Sau96I GGNCC 4 cut(s) 438, 829, 991, 1129
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 5 cut(s) 884, 930, 975, 987, 1033
SduI GDGCHC 4 cut(s) 157, 706, 880, 969
SfaNI GCATC 4 cut(s) 436, 608, 924, 1156
SinI GGWCC 3 cut(s) 438, 991, 1129
SmiMI CAYNNNNRTG 2 cut(s) 173, 976
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 8 cut(s) 15, 390, 420, 610, 671, 754, 810, 1049
SseBI AGGCCT 1 cut(s) 42
SsiI CCGC 5 cut(s) 294, 436, 532, 710, 833
SspI AATATT 1 cut(s) 822
SspMI CTAG 4 cut(s) 33, 150, 951, 1158
StuI AGGCCT 1 cut(s) 42
StyD4I CCNGG 5 cut(s) 882, 928, 973, 985, 1031
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 3 cut(s) 595, 790, 910
TaqI TCGA 4 cut(s) 217, 486, 792, 1038
TasI AATT 8 cut(s) 15, 390, 420, 610, 671, 754, 810, 1049
TatI WGTACW 1 cut(s) 19
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 2 cut(s) 214, 572
TscAI CASTG 4 cut(s) 288, 349, 598, 1002
TseI GCWGC 3 cut(s) 4, 100, 449
TspDTI ATGAA 1 cut(s) 567
TspGWI ACGGA 3 cut(s) 230, 556, 903
TspRI CASTG 4 cut(s) 288, 349, 598, 1002
Van91I CCANNNNNTGG 1 cut(s) 674
VneI GTGCAC 1 cut(s) 876
VpaK11BI GGWCC 3 cut(s) 438, 991, 1129
XapI RAATTY 3 cut(s) 390, 610, 671
XceI RCATGY 1 cut(s) 1112
XmiI GTMKAC 1 cut(s) 889
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 4 cut(s) 33, 150, 951, 1158
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.